CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67912
CDX68112
CDX70134
CDX73212
CDX74819
CDX76680
CDX76980
CDX77280
CDX80503
CDX80590
CDX83577
CDX85931
CDX86473
CDX87090
CDX87650
CDX88173
CDX89042
CDX89163
CDX90048
CDX92973
CDX93223
CDX93225
CDX93698
CDX93699
CDX96963
CDX98860
CDX99734
CDY01389
CDY03047
CDY03475
CDY04188
CDY06267
CDY07040
CDY07041
CDY09359
CDY09428
CDY09910
CDY10283
CDY10349
CDY10694
CDY11468
CDY13521
CDY13604
CDY14922
CDY15342
CDY15618
CDY16470
CDY17656
CDY17657
CDY19088
CDY19807
CDY20501
CDY22051
CDY24941
CDY29370
CDY30781
CDY34266
CDY35358
CDY36244
CDY39073
CDY39176
CDY40610
CDY40611
CDY40985
CDY41685
CDY43408
CDY44209
CDY45206
CDY48808
CDY49755
CDY50384
CDY53998
CDY60996
CDY63159
CDY63910
CDY65287
CDY65288
CDY66545
CDY66546
CDY67066
CDY67544
CDY68868
CDY68971
CDY69121

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02570.1	CDX90048	AT1G01640.1	15659098
AT4G02570.1	CDX96963	AT1G10230.1	16412087
AT4G02570.1	CDY14922	AT1G10230.1	16412087
AT4G02570.1	CDY01389	AT1G20140.1	16412087
AT4G02570.1	CDY29370	AT1G20140.1	16412087
AT4G02570.1	CDY43408	AT1G20140.1	16412087
AT4G02570.1	CDY44209	AT1G20140.1	16412087
AT4G02570.1	CDY63159	AT1G20140.1	16412087
AT4G02570.1	CDY67544	AT1G20140.1	16412087
AT4G02570.1	CDY68971	AT1G20140.1	16412087
AT4G02570.1	CDX68112	AT1G75950.1	12839993
AT4G02570.1	CDX73212	AT1G75950.1	12839993
AT4G02570.1	CDX80590	AT1G75950.1	12839993
AT4G02570.1	CDX85931	AT1G75950.1	12839993
AT4G02570.1	CDX87650	AT1G75950.1	12839993
AT4G02570.1	CDY13521	AT1G75950.1	12839993
AT4G02570.1	CDY39073	AT1G75950.1	12839993
AT4G02570.1	CDX68112	AT1G75950.1	15659098
AT4G02570.1	CDX73212	AT1G75950.1	15659098
AT4G02570.1	CDX80590	AT1G75950.1	15659098
AT4G02570.1	CDX85931	AT1G75950.1	15659098
AT4G02570.1	CDX87650	AT1G75950.1	15659098
AT4G02570.1	CDY13521	AT1G75950.1	15659098
AT4G02570.1	CDY39073	AT1G75950.1	15659098
AT4G02570.1	CDX68112	AT1G75950.1	15749712
AT4G02570.1	CDX73212	AT1G75950.1	15749712
AT4G02570.1	CDX80590	AT1G75950.1	15749712
AT4G02570.1	CDX85931	AT1G75950.1	15749712
AT4G02570.1	CDX87650	AT1G75950.1	15749712
AT4G02570.1	CDY13521	AT1G75950.1	15749712
AT4G02570.1	CDY39073	AT1G75950.1	15749712
AT4G02570.1	CDX68112	AT1G75950.1	16412087
AT4G02570.1	CDX73212	AT1G75950.1	16412087
AT4G02570.1	CDX80590	AT1G75950.1	16412087
AT4G02570.1	CDX85931	AT1G75950.1	16412087
AT4G02570.1	CDX87650	AT1G75950.1	16412087
AT4G02570.1	CDY13521	AT1G75950.1	16412087
AT4G02570.1	CDY39073	AT1G75950.1	16412087
AT4G02570.1	CDY09428	AT2G01620.1	12795696
AT4G02570.1	CDY17656	AT2G01620.1	12795696
AT4G02570.1	CDY17657	AT2G01620.1	12795696
AT4G02570.1	CDY36244	AT2G01620.1	12795696
AT4G02570.1	CDY48808	AT2G01620.1	12795696
AT4G02570.1	CDY49755	AT2G01620.1	12795696
AT4G02570.1	CDY03047	AT2G02560.1	15208391
AT4G02570.1	CDY09359	AT2G02560.1	15208391
AT4G02570.1	CDY41685	AT2G02560.1	15208391
AT4G02570.1	CDY45206	AT2G02560.1	15208391
AT4G02570.1	CDY03047	AT2G02560.1	15208392
AT4G02570.1	CDY09359	AT2G02560.1	15208392
AT4G02570.1	CDY41685	AT2G02560.1	15208392
AT4G02570.1	CDY45206	AT2G02560.1	15208392
AT4G02570.1	CDY03047	AT2G02560.1	18550827
AT4G02570.1	CDY09359	AT2G02560.1	18550827
AT4G02570.1	CDY41685	AT2G02560.1	18550827
AT4G02570.1	CDY45206	AT2G02560.1	18550827
AT4G02570.1	CDX96963	AT2G03160.1	16412087
AT4G02570.1	CDY14922	AT2G03160.1	16412087
AT4G02570.1	CDX96963	AT2G03190.1	16412087
AT4G02570.1	CDY14922	AT2G03190.1	16412087
AT4G02570.1	CDX76980	AT2G25490.1	14675533
AT4G02570.1	CDY35358	AT2G25490.1	14675533
AT4G02570.1	CDY01389	AT2G25700.1	16412087
AT4G02570.1	CDY29370	AT2G25700.1	16412087
AT4G02570.1	CDY43408	AT2G25700.1	16412087
AT4G02570.1	CDY44209	AT2G25700.1	16412087
AT4G02570.1	CDY63159	AT2G25700.1	16412087
AT4G02570.1	CDY67544	AT2G25700.1	16412087
AT4G02570.1	CDY68971	AT2G25700.1	16412087
AT4G02570.1	CDX70134	AT2G31470.1	18835996
AT4G02570.1	CDX98860	AT2G31470.1	18835996
AT4G02570.1	CDY15342	AT2G31470.1	18835996
AT4G02570.1	CDY19088	AT2G31470.1	18835996
AT4G02570.1	CDY65287	AT2G31470.1	18835996
AT4G02570.1	CDY65288	AT2G31470.1	18835996
AT4G02570.1	CDY66545	AT2G31470.1	18835996
AT4G02570.1	CDY66546	AT2G31470.1	18835996
AT4G02570.1	CDY67066	AT2G31470.1	18835996
AT4G02570.1	CDX74819	AT2G39940.1	12172031
AT4G02570.1	CDX93223	AT2G39940.1	12172031
AT4G02570.1	CDX93225	AT2G39940.1	12172031
AT4G02570.1	CDY07040	AT2G39940.1	12172031
AT4G02570.1	CDY07041	AT2G39940.1	12172031
AT4G02570.1	CDY20501	AT2G39940.1	12172031
AT4G02570.1	CDY24941	AT2G39940.1	12172031
AT4G02570.1	CDY60996	AT2G39940.1	12172031
AT4G02570.1	CDX74819	AT2G39940.1	12445118
AT4G02570.1	CDX93223	AT2G39940.1	12445118
AT4G02570.1	CDX93225	AT2G39940.1	12445118
AT4G02570.1	CDY07040	AT2G39940.1	12445118
AT4G02570.1	CDY07041	AT2G39940.1	12445118
AT4G02570.1	CDY20501	AT2G39940.1	12445118
AT4G02570.1	CDY24941	AT2G39940.1	12445118
AT4G02570.1	CDY60996	AT2G39940.1	12445118
AT4G02570.1	CDX74819	AT2G39940.1	12724535
AT4G02570.1	CDX93223	AT2G39940.1	12724535
AT4G02570.1	CDX93225	AT2G39940.1	12724535
AT4G02570.1	CDY07040	AT2G39940.1	12724535
AT4G02570.1	CDY07041	AT2G39940.1	12724535
AT4G02570.1	CDY20501	AT2G39940.1	12724535
AT4G02570.1	CDY24941	AT2G39940.1	12724535
AT4G02570.1	CDY60996	AT2G39940.1	12724535
AT4G02570.1	CDX89042	AT3G21860.1	16412087
AT4G02570.1	CDY69121	AT3G21860.1	16412087
AT4G02570.1	CDX92973	AT3G23050.1	12839993
AT4G02570.1	CDY10349	AT3G23050.1	12839993
AT4G02570.1	CDY10694	AT3G23050.1	12839993
AT4G02570.1	CDY30781	AT3G23050.1	12839993
AT4G02570.1	CDY63910	AT3G23050.1	12839993
AT4G02570.1	CDX92973	AT3G23050.1	15208392
AT4G02570.1	CDY10349	AT3G23050.1	15208392
AT4G02570.1	CDY10694	AT3G23050.1	15208392
AT4G02570.1	CDY30781	AT3G23050.1	15208392
AT4G02570.1	CDY63910	AT3G23050.1	15208392
AT4G02570.1	CDX92973	AT3G23050.1	18550827
AT4G02570.1	CDY10349	AT3G23050.1	18550827
AT4G02570.1	CDY10694	AT3G23050.1	18550827
AT4G02570.1	CDY30781	AT3G23050.1	18550827
AT4G02570.1	CDY63910	AT3G23050.1	18550827
AT4G02570.1	CDX96963	AT3G25650.1	16412087
AT4G02570.1	CDY14922	AT3G25650.1	16412087
AT4G02570.1	CDX83577	AT3G26000.1	12795696
AT4G02570.1	CDX99734	AT3G26000.1	12795696
AT4G02570.1	CDY04188	AT3G26000.1	12795696
AT4G02570.1	CDY13604	AT3G26000.1	12795696
AT4G02570.1	CDY39176	AT3G26000.1	12795696
AT4G02570.1	CDY40985	AT3G26000.1	12795696
AT4G02570.1	CDX77280	AT3G60010.1	16412087
AT4G02570.1	CDX93698	AT3G60010.1	16412087
AT4G02570.1	CDX93699	AT3G60010.1	16412087
AT4G02570.1	CDY16470	AT3G60010.1	16412087
AT4G02570.1	CDY40610	AT3G60010.1	16412087
AT4G02570.1	CDY40611	AT3G60010.1	16412087
AT4G02570.1	CDX67912	AT3G62980.1	18550827
AT4G02570.1	CDX76680	AT3G62980.1	18550827
AT4G02570.1	CDX89163	AT3G62980.1	18550827
AT4G02570.1	CDY11468	AT3G62980.1	18550827
AT4G02570.1	CDY53998	AT3G62980.1	18550827
AT4G02570.1	CDY68868	AT3G62980.1	18550827
AT4G02570.1	CDY22051	AT4G02440.1	16412087
AT4G02570.1	CDY50384	AT4G02440.1	16412087
AT4G02570.1	CDX86473	AT4G05460.1	12795696
AT4G02570.1	CDY06267	AT4G05460.1	12795696
AT4G02570.1	CDY09910	AT4G05460.1	12795696
AT4G02570.1	CDY10283	AT4G05460.1	12795696
AT4G02570.1	CDY15618	AT4G05460.1	12795696
AT4G02570.1	CDY03475	AT4G24210.1	15161962
AT4G02570.1	CDY34266	AT4G24210.1	15161962
AT4G02570.1	CDX80503	AT5G25350.1	14675533
AT4G02570.1	CDX87090	AT5G25350.1	14675533
AT4G02570.1	CDX88173	AT5G25350.1	14675533
AT4G02570.1	CDY19807	AT5G25350.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22060	Canola	cytosol	99.73	99.73
CDX90932	Canola	cytosol	98.1	98.1
CDY18013	Canola	cytosol	97.7	97.7
AT4G02570.1	Thale cress	cytosol	95.66	95.66
KRG96405	Soybean	cytosol	80.49	80.49
KRH68142	Soybean	cytosol	80.08	79.76
CDX91291	Canola	nucleus	13.14	79.51
Bra036257.1-P	Field mustard	cytosol, nucleus, peroxisome	99.46	74.44
CDY72590	Canola	cytosol	9.35	73.4
CDY51951	Canola	cytosol	71.41	71.51
CDX93643	Canola	cytosol	48.51	70.89
CDY11663	Canola	cytosol	66.94	70.27
CDX67439	Canola	cytosol	66.53	69.84
CDY32488	Canola	cytosol	69.65	69.65
CDX89926	Canola	cytosol	65.72	67.45
CDX89925	Canola	cytosol	64.77	65.57
CDY51863	Canola	cytosol	37.67	64.35
GSMUA_Achr9P17620_001	Banana	cytosol	62.6	62.69
CDY51862	Canola	cytosol	24.53	62.63
CDY37452	Canola	cytosol	8.94	50.38
Solyc01g099290.2.1	Tomato	cytosol	14.23	39.47
PGSC0003DMT400063662	Potato	cytosol	14.77	37.59
CDY18137	Canola	cytosol	67.07	33.74
CDY50732	Canola	cytosol	32.93	33.2
CDY45004	Canola	cytosol	32.79	33.06
CDY46437	Canola	cytosol	32.79	33.06
CDY16196	Canola	cytosol	32.79	33.06
Os05t0193900-00	Rice	cytosol	17.34	31.76
EES04173	Sorghum	cytosol	12.2	31.47
CDY33461	Canola	cytosol	32.11	31.14
CDY43957	Canola	cytosol	32.38	30.8
CDX87735	Canola	cytosol	32.38	30.64
HORVU3Hr1G098530.4	Barley	cytosol	12.47	30.56
CDX77644	Canola	cytosol	31.71	30.51
Zm00001d042193_P001	Maize	cytosol	12.06	30.48
TraesCS3B01G497300.1	Wheat	cytosol	12.33	30.33
CDY35152	Canola	plastid	32.11	30.15
CDY03235	Canola	plastid	32.25	30.13
Os01t0935300-02	Rice	cytosol	12.06	29.67
TraesCS3A01G457400.1	Wheat	cytosol	12.06	29.67
TraesCS3D01G450200.1	Wheat	cytosol	12.06	29.67
CDY21897	Canola	mitochondrion	8.54	24.71
CDY22061	Canola	mitochondrion	8.54	24.71

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.1.2	GO:A0A078G928	UniProt:A0A078G928
EnsemblPlants:CDY21896	ProteinID:CDY21896	ProteinID:CDY21896.1	InterPro:Cullin_CS	InterPro:Cullin_N	InterPro:Cullin_homology
InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	EnsemblPlantsGene:GSBRNA2T00018218001
InterPro:IPR016158	InterPro:IPR036388	PFAM:PF00888	PFAM:PF10557	ScanProsite:PS01256	PFscan:PS50069
PANTHER:PTHR11932	PANTHER:PTHR11932:SF97	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788
SUPFAM:SSF75632	UniPathway:UPA00143	UniParc:UPI0004EB641C	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

BnaC09g00020DBnaC09g00020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G928]

Coordinates

chrLK032126:+:3921..8547

Molecular Weight (calculated)

86219.7 Da

IEP (calculated)

7.072

GRAVY (calculated)

-0.459

Length

738 amino acids

Sequence
(BLAST)

001: MERKTIDLDQ GWDYMQTGIT KLKRILEGLP EPQFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYIHSTVLP ALREKHDEYM LRELVKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKD AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLLDS
201: ASYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVYA NQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKIVKGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNHAANT ASVQEQVLIR KVIELHDKYM VYVVECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFEE YLGNNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPAEMVK CVEVFKGFYE TKTKHRKLTW IYSLGTCHLN GKFDVKPIEL VVSTYQAAVL LLFNTTDKLS YTDILTQLNL
601: SHEDLVRLLH SLSCARYKIL LKEPSTKTVS QSDSFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN ANMFRYLA

Best Arabidopsis Sequence Match ( AT4G02570.4 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.