Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09910 | Canola | nucleus | 64.33 | 63.12 |
| CDY21989 | Canola | cytosol | 15.29 | 59.26 |
| CDY06267 | Canola | nucleus | 64.01 | 57.76 |
| CDY48578 | Canola | cytosol | 45.86 | 57.37 |
| CDY59275 | Canola | plastid | 56.05 | 54.83 |
| CDY48574 | Canola | cytosol | 51.91 | 54.7 |
| AT4G05460.1 | Thale cress | cytosol | 52.55 | 54.64 |
| CDY21333 | Canola | nucleus, plastid | 50.64 | 54.08 |
| CDY21988 | Canola | cytosol | 25.8 | 53.64 |
| CDY62000 | Canola | plastid | 55.41 | 52.89 |
| CDY48580 | Canola | cytosol | 51.27 | 52.44 |
| CDX99649 | Canola | cytosol | 38.53 | 51.93 |
| CDY15618 | Canola | cytosol | 46.18 | 51.6 |
| CDX86473 | Canola | cytosol | 42.04 | 51.56 |
| CDX73787 | Canola | cytosol | 41.72 | 51.17 |
| CDX77948 | Canola | cytosol | 27.39 | 50.89 |
| CDY15937 | Canola | cytosol | 37.58 | 50.64 |
| CDX90789 | Canola | cytosol | 48.09 | 50.17 |
| CDY48576 | Canola | cytosol | 47.13 | 49.83 |
| CDY48577 | Canola | cytosol | 43.63 | 48.58 |
| CDY48575 | Canola | plastid | 48.73 | 48.27 |
| CDY21986 | Canola | cytosol, plastid | 45.86 | 48.0 |
| CDY21990 | Canola | cytosol | 26.75 | 43.75 |
| KRH21099 | Soybean | cytosol | 42.36 | 42.77 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 42.04 | 41.12 |
| PGSC0003DMT400058969 | Potato | cytosol | 11.46 | 40.45 |
| KRH11147 | Soybean | cytosol | 40.13 | 39.62 |
| PGSC0003DMT400016134 | Potato | cytosol | 36.31 | 39.31 |
| PGSC0003DMT400052833 | Potato | cytosol | 33.76 | 38.55 |
| Solyc08g013800.2.1 | Tomato | cytosol | 34.08 | 36.39 |
| Solyc08g006940.2.1 | Tomato | cytosol | 35.99 | 36.33 |
| PGSC0003DMT400090939 | Potato | cytosol | 34.39 | 35.64 |
| PGSC0003DMT400015035 | Potato | cytosol | 34.71 | 35.62 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 29.94 | 35.21 |
| Solyc08g013780.1.1 | Tomato | cytosol | 13.69 | 34.96 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 28.66 | 34.88 |
| PGSC0003DMT400015030 | Potato | cytosol | 32.8 | 34.8 |
| CDY21983 | Canola | cytosol | 30.89 | 34.28 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 11.15 | 33.33 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 17.52 | 33.13 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 21.34 | 33.0 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 21.02 | 32.51 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 20.7 | 32.02 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 35.03 | 31.88 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 20.38 | 31.68 |
| PGSC0003DMT400054358 | Potato | cytosol | 33.76 | 31.27 |
| CDY09154 | Canola | plastid | 56.05 | 31.04 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 29.94 | 30.72 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 29.3 | 30.07 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 27.71 | 29.9 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 16.24 | 29.65 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 32.48 | 29.48 |
| Os08t0194350-00 | Rice | cytosol | 24.84 | 29.32 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 9.24 | 29.29 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 27.07 | 29.21 |
| Os02t0317500-01 | Rice | cytosol | 30.57 | 29.09 |
| EES14679 | Sorghum | nucleus | 31.85 | 29.07 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 15.92 | 29.07 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 31.85 | 28.9 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 32.17 | 28.86 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 27.07 | 28.81 |
| Zm00001d024252_P001 | Maize | cytosol | 24.2 | 28.79 |
| Solyc08g013820.2.1 | Tomato | cytosol | 34.08 | 28.76 |
| Os08t0193200-00 | Rice | cytosol | 10.51 | 28.7 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 30.89 | 28.61 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 29.62 | 28.35 |
| Os11t0637300-00 | Rice | cytosol | 10.83 | 28.33 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 21.02 | 28.33 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 18.47 | 28.29 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 31.53 | 28.29 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 31.53 | 28.29 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 27.07 | 28.15 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 27.39 | 28.1 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 29.3 | 28.05 |
| Zm00001d046526_P001 | Maize | plastid | 25.16 | 27.92 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 18.47 | 27.88 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 29.3 | 27.88 |
| TraesCS2D01G159000.1 | Wheat | plastid | 27.39 | 27.83 |
| Zm00001d010914_P001 | Maize | cytosol | 28.98 | 27.83 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 27.71 | 27.8 |
| KXG24670 | Sorghum | cytosol | 28.03 | 27.76 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 27.39 | 27.65 |
| CDY22112 | Canola | cytosol | 42.36 | 27.59 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 27.39 | 27.48 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 29.62 | 27.43 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 19.43 | 27.23 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 26.75 | 27.18 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 29.94 | 27.17 |
| Os02t0317300-01 | Rice | cytosol | 28.34 | 27.13 |
| EES17669 | Sorghum | cytosol | 28.66 | 27.11 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 26.43 | 26.95 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 26.43 | 26.95 |
| TraesCS2B01G178700.1 | Wheat | plastid | 26.43 | 26.86 |
| KXG24675 | Sorghum | cytosol | 24.52 | 26.74 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 28.98 | 26.69 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 27.39 | 26.54 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 26.11 | 26.45 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 18.79 | 26.34 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 27.07 | 26.32 |
| Os08t0193500-00 | Rice | cytosol | 18.15 | 26.03 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 26.11 | 25.95 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 24.84 | 25.91 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 15.92 | 25.91 |
| Zm00001d024265_P001 | Maize | cytosol | 24.52 | 25.67 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 26.43 | 25.62 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 26.11 | 25.55 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 8.6 | 25.47 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 9.55 | 25.42 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 25.8 | 25.31 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 17.83 | 25.23 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 25.48 | 25.16 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 25.8 | 25.0 |
| Os08t0193900-01 | Rice | nucleus | 30.57 | 24.24 |
| OQU80176 | Sorghum | mitochondrion | 17.2 | 24.22 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 25.8 | 24.18 |
| Zm00001d024764_P001 | Maize | cytosol | 26.75 | 23.53 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 21.02 | 23.49 |
| TraesCS7D01G203600.1 | Wheat | plastid | 25.48 | 23.46 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 10.51 | 23.24 |
| OQU80048 | Sorghum | cytosol | 21.02 | 23.16 |
| HORVU2Hr1G077990.2 | Barley | plastid | 27.39 | 22.99 |
| TraesCS6B01G067700.1 | Wheat | plastid | 19.43 | 22.76 |
| TraesCS7D01G203500.1 | Wheat | plastid | 24.52 | 22.65 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 30.57 | 22.22 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 24.52 | 22.13 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 23.25 | 22.12 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 24.2 | 22.09 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 23.89 | 21.8 |
| Os08t0191300-00 | Rice | cytosol, golgi | 17.83 | 21.79 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 21.02 | 21.78 |
| Os08t0193300-00 | Rice | cytosol | 22.61 | 21.32 |
| OQU80174 | Sorghum | cytosol | 8.92 | 20.9 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 23.25 | 20.86 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 22.61 | 20.82 |
| TraesCS6B01G310200.1 | Wheat | plastid | 23.89 | 20.78 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 23.25 | 20.68 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 22.93 | 20.34 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 22.29 | 20.29 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 29.94 | 20.0 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 13.38 | 19.72 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 14.65 | 18.93 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 14.97 | 18.8 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 15.92 | 18.52 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 25.8 | 18.49 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 25.8 | 18.2 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 22.93 | 18.18 |
| TraesCS6A01G051000.1 | Wheat | plastid | 21.34 | 18.01 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 27.07 | 17.93 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 17.2 | 17.88 |
| TraesCS3B01G452300.1 | Wheat | plastid | 26.43 | 17.85 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 26.43 | 17.73 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 26.43 | 17.55 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 27.07 | 17.14 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 15.92 | 16.72 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 20.7 | 16.62 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 19.11 | 16.17 |
| Os08t0196200-01 | Rice | cytosol | 9.24 | 10.58 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 1.27 | 1.06 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A078FDW9 | EnsemblPlants:CDY10283 | ProteinID:CDY10283 | ProteinID:CDY10283.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00032113001 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PFAM:PF12937 | PFscan:PS50181 | PANTHER:PTHR44078 |
| PANTHER:PTHR44078:SF5 | SMART:SM00256 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0004EE68B9 | SEG:seg |
Description
BnaC05g05260DBnaC05g05260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDW9]
Coordinates
chrLK032001:+:908436..910046
Molecular Weight (calculated)
35340.9 Da
IEP (calculated)
5.360
GRAVY (calculated)
-0.287
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSSSSL QTMIKEGEHR NWADLPPELT SLILQRLGAV EIVEKAEKVC RSWRSVGKDP SMWRKIEMRS LDPWQHKYHE KMCRHAVDRS QGGLVEIHPW
101: NFCTNSLLSY IAHRFSLALP LYVFSCVLLL GKGLAEAVVK LPLLEELEVS DCSYIGYCSS LGDTLKVVGQ SCPNLTTLKE NCVGYSHSRD KSDDVALAIA
201: ETMPGLHHLQ HFGNKLTEAG LNAILDSCPN LEHLDLRNCF NVNLAGDLEK RCVGRIKVVR RPNEPIHDYP FDATVNLAED GYPDDFSDGS IPEDDYSHHS
301: LSEILDFELQ YFYD
101: NFCTNSLLSY IAHRFSLALP LYVFSCVLLL GKGLAEAVVK LPLLEELEVS DCSYIGYCSS LGDTLKVVGQ SCPNLTTLKE NCVGYSHSRD KSDDVALAIA
201: ETMPGLHHLQ HFGNKLTEAG LNAILDSCPN LEHLDLRNCF NVNLAGDLEK RCVGRIKVVR RPNEPIHDYP FDATVNLAED GYPDDFSDGS IPEDDYSHHS
301: LSEILDFELQ YFYD
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.