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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, secretory
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G05460.1 TraesCS3A01G457400.1 AT4G02570.1 12795696
AT4G05460.1 TraesCS3B01G497300.1 AT4G02570.1 12795696
AT4G05460.1 TraesCS3D01G450200.1 AT4G02570.1 12795696
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G071400.1 Wheat cytosol 34.34 32.08
TraesCS5A01G471800.1 Wheat cytosol 52.53 25.62
TraesCS5B01G284300.1 Wheat cytosol 63.64 18.31
TraesCS2A01G153600.1 Wheat cytosol, plastid 56.57 18.12
CDY21988 Canola cytosol 26.26 17.22
TraesCS5D01G292400.1 Wheat cytosol 58.59 16.86
CDX77948 Canola cytosol 28.28 16.57
TraesCS5A01G075400.1 Wheat cytosol 46.46 15.03
TraesCS7A01G304900.1 Wheat mitochondrion, nucleus 39.39 14.61
CDY21990 Canola cytosol 27.27 14.06
TraesCS3A01G417500.1 Wheat cytosol 52.53 13.3
TraesCS2A01G313400.1 Wheat cytosol 40.4 12.86
TraesCS7A01G193100.1 Wheat cytosol 38.38 12.34
TraesCS1A01G033100.1 Wheat cytosol 39.39 11.89
CDY15937 Canola cytosol 27.27 11.59
CDX99649 Canola cytosol 27.27 11.59
Bra030342.1-P Field mustard cytosol 27.27 11.59
TraesCS3A01G411000.1 Wheat nucleus 39.39 11.5
TraesCS3A01G410700.1 Wheat mitochondrion 39.39 11.14
AT4G05497.1 Thale cress plastid 27.27 10.98
CDY62000 Canola plastid 36.36 10.94
CDX73787 Canola cytosol 28.28 10.94
AT4G05460.1 Thale cress cytosol 33.33 10.93
TraesCS3A01G417400.1 Wheat cytosol 54.55 10.89
CDY21333 Canola nucleus, plastid 32.32 10.88
Bra034231.1-P Field mustard cytosol, plastid 28.28 10.81
CDY48578 Canola cytosol 27.27 10.76
Bra034227.1-P Field mustard plastid 34.34 10.69
PGSC0003DMT400016134 Potato cytosol 31.31 10.69
Bra000816.1-P Field mustard plastid 34.34 10.46
CDY48575 Canola plastid 33.33 10.41
Bra034229.1-P Field mustard cytosol 28.28 10.14
AT4G05490.1 Thale cress plastid 31.31 10.1
VIT_10s0003g04300.t01 Wine grape cytosol 32.32 9.97
KRH21099 Soybean cytosol 31.31 9.97
TraesCS6A01G051000.1 Wheat plastid 37.37 9.95
CDY48577 Canola cytosol 28.28 9.93
Bra034230.1-P Field mustard cytosol 26.26 9.89
TraesCS6A01G089600.1 Wheat cytosol, mitochondrion 33.33 9.68
Solyc08g006940.2.1 Tomato cytosol 30.3 9.65
PGSC0003DMT400090939 Potato cytosol 29.29 9.57
KRH11147 Soybean cytosol 30.3 9.43
CDX86473 Canola cytosol 24.24 9.38
TraesCS6A01G090000.1 Wheat mitochondrion 33.33 9.35
CDY59275 Canola plastid 30.3 9.35
CDX90789 Canola cytosol 28.28 9.3
CDY10283 Canola cytosol 29.29 9.24
CDY48580 Canola cytosol 28.28 9.12
CDY48576 Canola cytosol 27.27 9.09
PGSC0003DMT400054358 Potato cytosol 30.3 8.85
Solyc08g013800.2.1 Tomato cytosol 26.26 8.84
TraesCS2A01G119000.1 Wheat nucleus 38.38 8.8
PGSC0003DMT400052833 Potato cytosol 24.24 8.73
CDY48574 Canola cytosol 26.26 8.72
Bra034226.1-P Field mustard cytosol 25.25 8.68
CDY21986 Canola cytosol, plastid 26.26 8.67
CDY15618 Canola cytosol 24.24 8.54
Bra030690.1-P Field mustard cytosol 24.24 8.54
PGSC0003DMT400015035 Potato cytosol 26.26 8.5
CDY09910 Canola nucleus 27.27 8.44
Bra034228.1-P Field mustard cytosol 25.25 8.42
CDY06267 Canola nucleus 29.29 8.33
Bra031582.1-P Field mustard nucleus 28.28 8.0
Bra000723.1-P Field mustard cytosol 12.12 7.89
AT4G05470.1 Thale cress cytosol, plastid 24.24 7.84
PGSC0003DMT400015030 Potato cytosol 23.23 7.77
AT4G05475.1 Thale cress cytosol 24.24 7.77
Solyc08g013820.2.1 Tomato cytosol 25.25 6.72
CDY22112 Canola cytosol 28.28 5.81
AT4G03630.1 Thale cress cytosol 12.12 5.45
CDY09154 Canola plastid 30.3 5.29
Bra020205.1-P Field mustard plastid 30.3 5.29
Bra034194.1-P Field mustard cytosol 28.28 5.23
AT5G52480.1 Thale cress cytosol 12.12 4.98
TraesCS1A01G128000.1 Wheat cytosol 9.09 3.86
Bra000817.1-P Field mustard plastid 6.06 3.33
Solyc08g006920.1.1 Tomato cytosol, mitochondrion, nucleus 10.1 3.3
Solyc08g013780.1.1 Tomato cytosol 3.03 2.44
CDY21989 Canola cytosol 1.01 1.23
CDY21983 Canola cytosol 3.03 1.06
PGSC0003DMT400058969 Potato cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:TraesCS7A01G484100.1EnsemblPlantsGene:TraesCS7A01G484100Gene3D:1.20.1280.50GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:IPR001810PANTHER:PTHR44078PFAM:PF12937PFscan:PS50181
SUPFAM:SSF81383MapMan:35.2::::
Description
No Description!
Coordinates
chr7A:+:675328644..675328943
Molecular Weight (calculated)
10940.4 Da
IEP (calculated)
7.351
GRAVY (calculated)
0.056
Length
99 amino acids
Sequence
(BLAST)
1: MGAPGPSARD WSEMPFDALT SVFAKLAAVE LLMGAELVCR SWLEAAKAPE LWRAVVMMCQ PHNVVDRGAS LCAMAKEAVD RSGRLLEKFV IRGEEIRHR
Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.