Factsheet for TraesCS6A01G051000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	TraesCS3A01G457400.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3B01G497300.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3D01G450200.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G067700.1	Wheat	plastid	65.59	91.04
TraesCS6B01G067500.1	Wheat	cytosol, extracellular	55.91	85.6
TraesCS6A01G090000.1	Wheat	mitochondrion	54.84	57.79
TraesCS6A01G089600.1	Wheat	cytosol, mitochondrion	51.88	56.6
TraesCS7D01G203600.1	Wheat	plastid	42.74	46.63
TraesCS7D01G203500.1	Wheat	plastid	42.47	46.47
TraesCS7A01G304900.1	Wheat	mitochondrion, nucleus	29.57	41.2
TraesCS7A01G484100.1	Wheat	cytosol	9.95	37.37
TraesCS2A01G071400.1	Wheat	cytosol	9.41	33.02
TraesCS3A01G411000.1	Wheat	nucleus	29.84	32.74
TraesCS7A01G193100.1	Wheat	cytosol	26.61	32.14
TraesCS3A01G410700.1	Wheat	mitochondrion	30.11	32.0
CDY21988	Canola	cytosol	12.63	31.13
TraesCS5A01G471800.1	Wheat	cytosol	16.4	30.05
Zm00001d046526_P001	Maize	plastid	22.85	30.04
TraesCS2A01G313400.1	Wheat	cytosol	24.73	29.58
CDY15937	Canola	cytosol	18.28	29.18
Zm00001d046527_P001	Maize	extracellular, mitochondrion, nucleus	17.2	28.83
Bra030342.1-P	Field mustard	cytosol	18.01	28.76
TraesCS5A01G075400.1	Wheat	cytosol	23.39	28.43
CDX99649	Canola	cytosol	17.74	28.33
TraesCS2A01G153600.1	Wheat	cytosol, plastid	22.31	26.86
TraesCS1A01G033100.1	Wheat	cytosol	23.66	26.83
CDX77948	Canola	cytosol	12.1	26.63
CDX86473	Canola	cytosol	18.28	26.56
Bra030690.1-P	Field mustard	cytosol	19.89	26.33
CDY15618	Canola	cytosol	19.89	26.33
CDY21333	Canola	nucleus, plastid	20.7	26.19
TraesCS2A01G119000.1	Wheat	nucleus	29.84	25.69
AT4G05497.1	Thale cress	plastid	16.94	25.61
Bra000817.1-P	Field mustard	plastid	12.37	25.56
CDY48575	Canola	plastid	21.77	25.55
KRH21099	Soybean	cytosol	21.24	25.4
AT4G05460.1	Thale cress	cytosol	20.43	25.17
Bra034227.1-P	Field mustard	plastid	21.51	25.16
Bra034230.1-P	Field mustard	cytosol	17.74	25.1
CDY48580	Canola	cytosol	20.43	24.76
CDY48578	Canola	cytosol	16.67	24.7
VIT_10s0003g04300.t01	Wine grape	cytosol	21.24	24.61
KRH11147	Soybean	cytosol	20.97	24.53
PGSC0003DMT400015035	Potato	cytosol	20.16	24.51
CDY48576	Canola	cytosol	19.35	24.24
Bra034228.1-P	Field mustard	cytosol	19.35	24.24
AT4G03630.1	Thale cress	cytosol	14.25	24.09
Bra034229.1-P	Field mustard	cytosol	17.74	23.91
CDX73787	Canola	cytosol	16.4	23.83
CDY62000	Canola	plastid	20.97	23.71
CDX90789	Canola	cytosol	19.09	23.59
Bra034231.1-P	Field mustard	cytosol, plastid	16.4	23.55
CDY48574	Canola	cytosol	18.82	23.49
CDY09910	Canola	nucleus	20.16	23.44
CDY21986	Canola	cytosol, plastid	18.82	23.33
Solyc08g006940.2.1	Tomato	cytosol	19.35	23.15
AT4G05490.1	Thale cress	plastid	19.09	23.13
Bra034226.1-P	Field mustard	cytosol	17.74	22.92
Solyc08g013800.2.1	Tomato	cytosol	18.01	22.79
Bra000816.1-P	Field mustard	plastid	19.89	22.77
CDY59275	Canola	plastid	19.62	22.74
PGSC0003DMT400090939	Potato	cytosol	18.28	22.44
CDY48577	Canola	cytosol	16.94	22.34
TraesCS1A01G128000.1	Wheat	cytosol	13.71	21.89
PGSC0003DMT400016134	Potato	cytosol	16.94	21.72
PGSC0003DMT400015030	Potato	cytosol	17.2	21.62
AT5G52480.1	Thale cress	cytosol	13.98	21.58
CDY06267	Canola	nucleus	20.16	21.55
CDY10283	Canola	cytosol	18.01	21.34
PGSC0003DMT400054358	Potato	cytosol	19.35	21.24
Bra031582.1-P	Field mustard	nucleus	19.89	21.14
AT4G05475.1	Thale cress	cytosol	17.47	21.04
AT4G05470.1	Thale cress	cytosol, plastid	17.2	20.91
PGSC0003DMT400052833	Potato	cytosol	15.32	20.73
CDY21990	Canola	cytosol	10.48	20.31
Solyc08g013820.2.1	Tomato	cytosol	20.16	20.16
CDY21989	Canola	cytosol	4.03	18.52
TraesCS3A01G417500.1	Wheat	cytosol	19.09	18.16
TraesCS3A01G417400.1	Wheat	cytosol	22.04	16.53
Solyc08g013780.1.1	Tomato	cytosol	5.38	16.26
Bra000723.1-P	Field mustard	cytosol	6.45	15.79
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	12.37	15.18
CDY21983	Canola	cytosol	10.48	13.78
PGSC0003DMT400058969	Potato	cytosol	3.23	13.48
Bra020205.1-P	Field mustard	plastid	19.62	12.87
CDY09154	Canola	plastid	19.62	12.87
Bra034194.1-P	Field mustard	cytosol	18.28	12.71
CDY22112	Canola	cytosol	16.13	12.45

Protein Annotations

EnsemblPlants:TraesCS6A01G051000.1	EnsemblPlantsGene:TraesCS6A01G051000	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR44078	PANTHER:PTHR44078:SF3	PFAM:PF12937	SEG:seg	SUPFAM:SSF52047	SUPFAM:SSF81383
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:26620533..26621839

Molecular Weight (calculated)

42885.5 Da

IEP (calculated)

6.766

GRAVY (calculated)

-0.265

Length

372 amino acids

Sequence
(BLAST)

001: MDPPISKPVP ARHIVHIAHT MPSSPPSPPP AAAPRSRRSK KKTRTYHVSV FWFTPVPLPE RDWAELHPDL ISCIFHKLDQ AELLLGGVAG VCRSWRRAAR
101: EEPELWRCID LRGGLWFVPP FHPKFSLEAM VRAALRLSQG QCEAFLTNLA DDDILLLLAK QAPALKCLHL HRCYVSDEGF AAVIKMLPLL EELEISKCPQ
201: IYSREVYELV ATACPLLKHF RHVSGKNCHA GYAITFAAPR MRKLRSLDVV GCTFGREVLL SILDNCHDLE YLNMSVCDPI AIDNPPENLA WMSMNDLYWY
301: WSNYYNDYTG CNCCHPYKPR CNYCRTWSYL HYQDDPYYDY CYYLGDGDDV DDANLEEYEN ILDIKSMRRY LS

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.