Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063662 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | PGSC0003DMT400063662 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g006940.2.1 | Tomato | cytosol | 86.47 | 84.24 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 51.82 | 48.91 |
| KRH21099 | Soybean | cytosol | 48.51 | 47.27 |
| PGSC0003DMT400052833 | Potato | cytosol | 41.91 | 46.18 |
| PGSC0003DMT400058969 | Potato | cytosol | 13.2 | 44.94 |
| KRH11147 | Soybean | cytosol | 46.86 | 44.65 |
| PGSC0003DMT400015035 | Potato | cytosol | 44.88 | 44.44 |
| CDX99649 | Canola | cytosol | 33.99 | 44.21 |
| CDY15937 | Canola | cytosol | 33.66 | 43.78 |
| PGSC0003DMT400016134 | Potato | cytosol | 41.58 | 43.45 |
| Bra030342.1-P | Field mustard | cytosol | 32.67 | 42.49 |
| CDY21989 | Canola | cytosol | 11.22 | 41.98 |
| PGSC0003DMT400015030 | Potato | cytosol | 40.92 | 41.89 |
| AT4G03630.1 | Thale cress | cytosol | 30.36 | 41.82 |
| AT4G05460.1 | Thale cress | cytosol | 41.58 | 41.72 |
| Bra034230.1-P | Field mustard | cytosol | 34.32 | 39.54 |
| CDX90789 | Canola | cytosol | 39.27 | 39.53 |
| PGSC0003DMT400054358 | Potato | cytosol | 44.22 | 39.53 |
| Bra000817.1-P | Field mustard | plastid | 23.43 | 39.44 |
| CDY48578 | Canola | cytosol | 32.67 | 39.44 |
| Bra034226.1-P | Field mustard | cytosol | 37.29 | 39.24 |
| Bra030690.1-P | Field mustard | cytosol | 36.3 | 39.15 |
| CDY15618 | Canola | cytosol | 36.3 | 39.15 |
| CDY21988 | Canola | cytosol | 19.47 | 39.07 |
| CDX73787 | Canola | cytosol | 33.0 | 39.06 |
| CDY09910 | Canola | nucleus | 41.25 | 39.06 |
| CDY21333 | Canola | nucleus, plastid | 37.62 | 38.78 |
| CDX86473 | Canola | cytosol | 32.67 | 38.67 |
| CDY48574 | Canola | cytosol | 37.95 | 38.59 |
| Bra000723.1-P | Field mustard | cytosol | 19.14 | 38.16 |
| Bra034227.1-P | Field mustard | plastid | 39.93 | 38.05 |
| CDY48580 | Canola | cytosol | 37.95 | 37.46 |
| CDY48575 | Canola | plastid | 38.94 | 37.22 |
| AT4G05497.1 | Thale cress | plastid | 30.03 | 36.99 |
| Bra000816.1-P | Field mustard | plastid | 38.28 | 35.69 |
| CDY06267 | Canola | nucleus | 40.92 | 35.63 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 30.36 | 35.52 |
| Bra031582.1-P | Field mustard | nucleus | 40.92 | 35.43 |
| CDY48576 | Canola | cytosol | 34.65 | 35.35 |
| CDY62000 | Canola | plastid | 38.28 | 35.26 |
| Bra034229.1-P | Field mustard | cytosol | 32.01 | 35.14 |
| AT4G05490.1 | Thale cress | plastid | 35.31 | 34.85 |
| CDY21986 | Canola | cytosol, plastid | 34.32 | 34.67 |
| AT5G52480.1 | Thale cress | cytosol | 27.39 | 34.44 |
| CDY10283 | Canola | cytosol | 35.64 | 34.39 |
| Bra034228.1-P | Field mustard | cytosol | 33.66 | 34.34 |
| CDY59275 | Canola | plastid | 36.3 | 34.27 |
| CDY48577 | Canola | cytosol | 31.68 | 34.04 |
| CDX77948 | Canola | cytosol | 18.48 | 33.14 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 33.33 | 33.01 |
| AT4G05475.1 | Thale cress | cytosol | 33.33 | 32.69 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 28.71 | 32.58 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 17.82 | 32.53 |
| CDY21990 | Canola | cytosol | 19.8 | 31.25 |
| KXG24675 | Sorghum | cytosol | 29.7 | 31.25 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 26.4 | 31.01 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 32.34 | 29.88 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 29.7 | 29.41 |
| Zm00001d010914_P001 | Maize | cytosol | 31.68 | 29.36 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 9.57 | 29.29 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 29.37 | 29.09 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 29.37 | 29.09 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 19.47 | 29.06 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 19.47 | 29.06 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 19.47 | 28.78 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 30.69 | 28.7 |
| OQU80176 | Sorghum | mitochondrion | 21.12 | 28.7 |
| Os02t0317300-01 | Rice | cytosol | 31.02 | 28.66 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 31.02 | 28.66 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 9.9 | 28.57 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 19.14 | 28.57 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 31.02 | 28.48 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 19.47 | 28.37 |
| EES17669 | Sorghum | cytosol | 31.02 | 28.31 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 9.9 | 28.3 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 28.71 | 28.25 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 18.81 | 28.22 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 27.39 | 28.14 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 28.38 | 27.92 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 26.73 | 27.84 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 26.73 | 27.84 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 29.7 | 27.78 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 20.46 | 27.68 |
| Zm00001d024252_P001 | Maize | cytosol | 24.09 | 27.65 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 27.39 | 27.57 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 28.71 | 27.53 |
| Os11t0637300-00 | Rice | cytosol | 10.89 | 27.5 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 29.37 | 27.47 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 28.05 | 27.42 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 15.51 | 27.33 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 31.02 | 27.17 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 31.02 | 27.17 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 31.02 | 27.17 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 31.35 | 27.14 |
| EES14679 | Sorghum | nucleus | 30.69 | 27.03 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 28.71 | 26.93 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 26.73 | 26.82 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 15.18 | 26.74 |
| OQU80048 | Sorghum | cytosol | 25.08 | 26.67 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 30.69 | 26.57 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 28.05 | 26.56 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 30.03 | 26.38 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 27.06 | 26.37 |
| Os02t0317500-01 | Rice | cytosol | 28.71 | 26.36 |
| Os08t0194350-00 | Rice | cytosol | 23.1 | 26.32 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 29.37 | 26.25 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 26.73 | 26.21 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 20.13 | 26.18 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 30.03 | 26.0 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 26.73 | 25.88 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 26.73 | 25.88 |
| KXG24670 | Sorghum | cytosol | 27.06 | 25.87 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 28.71 | 25.66 |
| Zm00001d024265_P001 | Maize | cytosol | 25.08 | 25.33 |
| TraesCS2B01G178700.1 | Wheat | plastid | 25.74 | 25.24 |
| CDY21983 | Canola | cytosol | 23.43 | 25.09 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 28.05 | 24.93 |
| Zm00001d024764_P001 | Maize | cytosol | 29.04 | 24.65 |
| TraesCS2D01G159000.1 | Wheat | plastid | 25.08 | 24.6 |
| Os08t0193900-01 | Rice | nucleus | 32.01 | 24.49 |
| Os08t0193200-00 | Rice | cytosol | 9.24 | 24.35 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 25.41 | 23.99 |
| TraesCS7D01G203500.1 | Wheat | plastid | 26.4 | 23.53 |
| Zm00001d046526_P001 | Maize | plastid | 21.78 | 23.32 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 17.16 | 23.21 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 21.45 | 23.13 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 26.4 | 22.99 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 25.41 | 22.99 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 26.07 | 22.97 |
| TraesCS7D01G203600.1 | Wheat | plastid | 25.74 | 22.87 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 14.52 | 22.8 |
| TraesCS6B01G067700.1 | Wheat | plastid | 20.13 | 22.76 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 16.5 | 22.52 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 24.42 | 22.42 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 25.08 | 22.09 |
| Os08t0193500-00 | Rice | cytosol | 15.84 | 21.92 |
| HORVU2Hr1G077990.2 | Barley | plastid | 26.73 | 21.66 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 15.18 | 21.6 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 8.25 | 21.19 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 23.76 | 21.11 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 22.11 | 21.07 |
| Bra034194.1-P | Field mustard | cytosol | 36.63 | 20.75 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 24.09 | 20.68 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 24.09 | 20.62 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 9.57 | 20.42 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 23.43 | 20.29 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 15.84 | 19.75 |
| TraesCS6B01G310200.1 | Wheat | plastid | 23.43 | 19.67 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 27.72 | 19.44 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 22.11 | 19.42 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 19.14 | 19.4 |
| CDY22112 | Canola | cytosol | 30.69 | 19.29 |
| Bra020205.1-P | Field mustard | plastid | 35.97 | 19.22 |
| CDY09154 | Canola | plastid | 35.97 | 19.22 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 15.84 | 19.2 |
| Os08t0191300-00 | Rice | cytosol, golgi | 16.17 | 19.07 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 29.04 | 18.72 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 28.71 | 18.35 |
| TraesCS6A01G051000.1 | Wheat | plastid | 22.44 | 18.28 |
| TraesCS3B01G452300.1 | Wheat | plastid | 27.72 | 18.06 |
| Os08t0193300-00 | Rice | cytosol | 19.8 | 18.02 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 26.4 | 17.98 |
| OQU80174 | Sorghum | cytosol | 7.92 | 17.91 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 27.72 | 17.76 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 27.39 | 17.73 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 23.1 | 17.68 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 15.51 | 17.41 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 25.08 | 17.35 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 27.72 | 16.94 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 16.83 | 16.89 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 21.45 | 16.62 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 17.16 | 14.02 |
| Os08t0196200-01 | Rice | cytosol | 7.92 | 8.76 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.66 | 0.53 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp |
| UniProt:M1DLJ3 | PFAM:PF12937 | EnsemblPlantsGene:PGSC0003DMG400040510 | PGSC:PGSC0003DMG400040510 | EnsemblPlants:PGSC0003DMT400090939 | PFscan:PS50181 |
| PANTHER:PTHR44078 | PANTHER:PTHR44078:SF5 | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0002959877 |
| SEG:seg | : | : | : | : | : |
Description
Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400040510]
Coordinates
chr8:+:1303150..1306171
Molecular Weight (calculated)
34401.5 Da
IEP (calculated)
4.336
GRAVY (calculated)
-0.484
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSIAPPWV ELPPDITSSI LQKVGPIEML KSADKVCSTW RRLCHEPAMW RVVKMQNAGA DFWDREDDLE KICGRAVECS NGELVDLSLE YFGSDKLLSY
101: IAERSPQLKH LRLVCSYNVS AEGLSAAVKK FPLLEELHLF YIAITKEAIE TIGSSCRGLK SFKLNNQICR HPYSERDEEA KAIAQNMPEL HHLQLLGNKM
201: TNGGLEAILN GCPQLESLDL RRCLTVNLLG EVGKRYFRQF KSLRPPQDPA EDYGPDTEMH DYGSFDEDYP SEFSDIDLIS DDDDDYELSD GSNYSDDDEM
301: LFE
101: IAERSPQLKH LRLVCSYNVS AEGLSAAVKK FPLLEELHLF YIAITKEAIE TIGSSCRGLK SFKLNNQICR HPYSERDEEA KAIAQNMPEL HHLQLLGNKM
201: TNGGLEAILN GCPQLESLDL RRCLTVNLLG EVGKRYFRQF KSLRPPQDPA EDYGPDTEMH DYGSFDEDYP SEFSDIDLIS DDDDDYELSD GSNYSDDDEM
301: LFE
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.