Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G480000.1 | Wheat | cytosol | 89.25 | 93.15 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 25.97 | 50.58 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 27.76 | 45.81 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 26.87 | 44.55 |
| TraesCS2D01G159000.1 | Wheat | plastid | 39.1 | 42.39 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 38.51 | 37.5 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 32.54 | 35.62 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 29.55 | 34.02 |
| AT4G03630.1 | Thale cress | cytosol | 21.49 | 32.73 |
| CDX77948 | Canola | cytosol | 16.12 | 31.95 |
| CDX99649 | Canola | cytosol | 22.09 | 31.76 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 31.04 | 31.71 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 30.45 | 31.48 |
| CDY21988 | Canola | cytosol | 14.03 | 31.13 |
| CDY15937 | Canola | cytosol | 21.49 | 30.9 |
| CDX73787 | Canola | cytosol | 23.28 | 30.47 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 28.36 | 30.35 |
| CDY48578 | Canola | cytosol | 22.69 | 30.28 |
| KRH21099 | Soybean | cytosol | 28.06 | 30.23 |
| Bra030342.1-P | Field mustard | cytosol | 20.9 | 30.04 |
| Bra034230.1-P | Field mustard | cytosol | 23.58 | 30.04 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 31.34 | 30.0 |
| CDY21333 | Canola | nucleus, plastid | 26.27 | 29.93 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 30.75 | 29.77 |
| CDY21989 | Canola | cytosol | 7.16 | 29.63 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 26.27 | 29.24 |
| Bra034226.1-P | Field mustard | cytosol | 25.07 | 29.17 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 29.55 | 29.03 |
| Bra034229.1-P | Field mustard | cytosol | 23.88 | 28.99 |
| KRH11147 | Soybean | cytosol | 27.46 | 28.93 |
| Bra000817.1-P | Field mustard | plastid | 15.52 | 28.89 |
| Solyc08g013780.1.1 | Tomato | cytosol | 10.45 | 28.46 |
| AT4G05490.1 | Thale cress | plastid | 25.97 | 28.34 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 11.94 | 28.17 |
| AT4G05460.1 | Thale cress | cytosol | 25.37 | 28.15 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 26.87 | 28.04 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 26.27 | 27.85 |
| AT5G52480.1 | Thale cress | cytosol | 20.0 | 27.8 |
| CDY48577 | Canola | cytosol | 23.28 | 27.66 |
| PGSC0003DMT400016134 | Potato | cytosol | 23.88 | 27.59 |
| CDX90789 | Canola | cytosol | 24.78 | 27.57 |
| AT4G05475.1 | Thale cress | cytosol | 25.37 | 27.51 |
| CDY48580 | Canola | cytosol | 25.07 | 27.36 |
| Bra034227.1-P | Field mustard | plastid | 25.97 | 27.36 |
| CDY62000 | Canola | plastid | 26.87 | 27.36 |
| CDY48575 | Canola | plastid | 25.67 | 27.13 |
| CDY59275 | Canola | plastid | 25.97 | 27.1 |
| Bra000816.1-P | Field mustard | plastid | 25.97 | 26.77 |
| Solyc08g006940.2.1 | Tomato | cytosol | 24.78 | 26.69 |
| CDY48576 | Canola | cytosol | 23.58 | 26.6 |
| PGSC0003DMT400052833 | Potato | cytosol | 21.79 | 26.55 |
| CDY48574 | Canola | cytosol | 23.58 | 26.51 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 24.18 | 26.47 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 27.46 | 26.44 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 20.3 | 26.25 |
| CDY21986 | Canola | cytosol, plastid | 23.28 | 26.0 |
| Bra030690.1-P | Field mustard | cytosol | 21.79 | 25.98 |
| CDY15618 | Canola | cytosol | 21.79 | 25.98 |
| CDY09910 | Canola | nucleus | 24.78 | 25.94 |
| Bra034228.1-P | Field mustard | cytosol | 22.99 | 25.93 |
| CDY10283 | Canola | cytosol | 24.18 | 25.8 |
| PGSC0003DMT400015035 | Potato | cytosol | 23.28 | 25.49 |
| PGSC0003DMT400090939 | Potato | cytosol | 22.99 | 25.41 |
| AT4G05497.1 | Thale cress | plastid | 18.51 | 25.2 |
| CDX86473 | Canola | cytosol | 19.1 | 25.0 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 23.58 | 24.84 |
| Solyc08g013800.2.1 | Tomato | cytosol | 21.79 | 24.83 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 27.46 | 24.8 |
| PGSC0003DMT400015030 | Potato | cytosol | 21.79 | 24.66 |
| CDY21990 | Canola | cytosol | 14.03 | 24.48 |
| TraesCS7D01G203500.1 | Wheat | plastid | 24.78 | 24.41 |
| CDY06267 | Canola | nucleus | 25.07 | 24.14 |
| TraesCS7D01G203600.1 | Wheat | plastid | 24.48 | 24.05 |
| PGSC0003DMT400054358 | Potato | cytosol | 24.18 | 23.89 |
| Bra031582.1-P | Field mustard | nucleus | 24.78 | 23.71 |
| PGSC0003DMT400058969 | Potato | cytosol | 6.27 | 23.6 |
| Bra000723.1-P | Field mustard | cytosol | 10.45 | 23.03 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 28.96 | 22.15 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 30.45 | 21.79 |
| Solyc08g013820.2.1 | Tomato | cytosol | 22.69 | 20.43 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 17.01 | 18.81 |
| Bra034194.1-P | Field mustard | cytosol | 24.78 | 15.51 |
| Bra020205.1-P | Field mustard | plastid | 25.97 | 15.34 |
| CDY09154 | Canola | plastid | 25.97 | 15.34 |
| CDY21983 | Canola | cytosol | 12.84 | 15.19 |
| CDY22112 | Canola | cytosol | 21.79 | 15.15 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G555100.1 | EnsemblPlantsGene:TraesCS7D01G555100 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR44078 | PFAM:PF00646 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr7D:-:638615158..638617574
Molecular Weight (calculated)
37523.2 Da
IEP (calculated)
5.253
GRAVY (calculated)
-0.091
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MCTRGPSARD WSKMPLDALT SVFAKLGAVE LLMGAGLVCR SWLYASKAPE LWRAVVMSRP PDTPEGTEAF LRAIAKVSSE LWPAVPITGI DDPWRAMAKV
101: DDSLCAMAKA AVDRSDGRLQ KFVARDFGTD ELLEYIADRS PSLKSLGLMQ CHDISEKGFM DSIVKFPQLE ELVLIECHNI SDDQKENRDV YEAISRACSQ
201: LKLFVLAHPG YFLHPNGSYG FHDGDVLGIA TMKQLRHLSL DCVDINNAEL VSIIDSCPYL EHLCMRYCYN IVANEALRAK CARIKTLKLR PMSDETADPN
301: QGRHSDPNDC CFVFFDSPID EFVILSFLDS WRKIC
101: DDSLCAMAKA AVDRSDGRLQ KFVARDFGTD ELLEYIADRS PSLKSLGLMQ CHDISEKGFM DSIVKFPQLE ELVLIECHNI SDDQKENRDV YEAISRACSQ
201: LKLFVLAHPG YFLHPNGSYG FHDGDVLGIA TMKQLRHLSL DCVDINNAEL VSIIDSCPYL EHLCMRYCYN IVANEALRAK CARIKTLKLR PMSDETADPN
301: QGRHSDPNDC CFVFFDSPID EFVILSFLDS WRKIC
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.