Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G452300.1 | Wheat | plastid | 95.09 | 95.7 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 62.18 | 83.62 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 85.47 | 80.65 |
| Os08t0193200-00 | Rice | cytosol | 17.73 | 72.17 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 65.6 | 70.09 |
| KXG24670 | Sorghum | cytosol | 41.24 | 60.88 |
| Os08t0193500-00 | Rice | cytosol | 26.71 | 57.08 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 19.44 | 44.83 |
| Os08t0193300-00 | Rice | cytosol | 31.84 | 44.74 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 16.24 | 44.19 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 18.38 | 42.57 |
| PGSC0003DMT400058969 | Potato | cytosol | 7.05 | 37.08 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 23.72 | 36.27 |
| TraesCS2D01G159000.1 | Wheat | plastid | 23.93 | 36.25 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 25.64 | 34.88 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 21.58 | 34.71 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 22.65 | 33.54 |
| CDY48578 | Canola | cytosol | 17.95 | 33.47 |
| Bra034230.1-P | Field mustard | cytosol | 18.8 | 33.46 |
| KRH21099 | Soybean | cytosol | 22.22 | 33.44 |
| CDY21988 | Canola | cytosol | 10.68 | 33.11 |
| CDX73787 | Canola | cytosol | 17.73 | 32.42 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 23.93 | 32.37 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 24.15 | 32.29 |
| AT4G05460.1 | Thale cress | cytosol | 20.73 | 32.12 |
| CDY21989 | Canola | cytosol | 5.56 | 32.1 |
| KRH11147 | Soybean | cytosol | 21.79 | 32.08 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 20.51 | 31.89 |
| CDY48580 | Canola | cytosol | 20.73 | 31.6 |
| CDX99649 | Canola | cytosol | 15.6 | 31.33 |
| Bra000817.1-P | Field mustard | plastid | 11.97 | 31.11 |
| Bra030342.1-P | Field mustard | cytosol | 15.38 | 30.9 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 17.09 | 30.89 |
| Bra034227.1-P | Field mustard | plastid | 20.94 | 30.82 |
| Bra034229.1-P | Field mustard | cytosol | 18.16 | 30.8 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 21.58 | 30.79 |
| CDY48575 | Canola | plastid | 20.73 | 30.6 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 21.15 | 30.56 |
| CDY15937 | Canola | cytosol | 15.17 | 30.47 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 21.79 | 30.45 |
| CDY48574 | Canola | cytosol | 19.23 | 30.2 |
| CDY48576 | Canola | cytosol | 19.02 | 29.97 |
| CDY21333 | Canola | nucleus, plastid | 18.8 | 29.93 |
| Bra034226.1-P | Field mustard | cytosol | 18.38 | 29.86 |
| PGSC0003DMT400016134 | Potato | cytosol | 18.38 | 29.66 |
| CDX77948 | Canola | cytosol | 10.68 | 29.59 |
| CDX90789 | Canola | cytosol | 19.02 | 29.57 |
| AT4G03630.1 | Thale cress | cytosol | 13.89 | 29.55 |
| Bra030690.1-P | Field mustard | cytosol | 17.73 | 29.54 |
| CDY15618 | Canola | cytosol | 17.73 | 29.54 |
| AT5G52480.1 | Thale cress | cytosol | 15.17 | 29.46 |
| CDY21986 | Canola | cytosol, plastid | 18.8 | 29.33 |
| AT4G05490.1 | Thale cress | plastid | 19.23 | 29.32 |
| Bra034228.1-P | Field mustard | cytosol | 18.59 | 29.29 |
| Bra000816.1-P | Field mustard | plastid | 20.3 | 29.23 |
| CDX86473 | Canola | cytosol | 15.81 | 28.91 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 8.76 | 28.87 |
| AT4G05497.1 | Thale cress | plastid | 15.17 | 28.86 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 19.23 | 28.75 |
| PGSC0003DMT400052833 | Potato | cytosol | 16.88 | 28.73 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 19.66 | 28.66 |
| CDY48577 | Canola | cytosol | 17.09 | 28.37 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 20.51 | 28.15 |
| CDY62000 | Canola | plastid | 19.66 | 27.96 |
| Solyc08g006940.2.1 | Tomato | cytosol | 18.38 | 27.65 |
| AT4G05475.1 | Thale cress | cytosol | 18.16 | 27.51 |
| PGSC0003DMT400090939 | Potato | cytosol | 17.73 | 27.39 |
| PGSC0003DMT400015035 | Potato | cytosol | 17.73 | 27.12 |
| CDY09910 | Canola | nucleus | 18.38 | 26.88 |
| CDY59275 | Canola | plastid | 18.38 | 26.79 |
| CDY06267 | Canola | nucleus | 19.87 | 26.72 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 17.31 | 26.47 |
| TraesCS7D01G203500.1 | Wheat | plastid | 19.23 | 26.47 |
| CDY10283 | Canola | cytosol | 17.73 | 26.43 |
| TraesCS7D01G203600.1 | Wheat | plastid | 19.23 | 26.39 |
| Bra031582.1-P | Field mustard | nucleus | 19.66 | 26.29 |
| Solyc08g013800.2.1 | Tomato | cytosol | 16.45 | 26.19 |
| Bra000723.1-P | Field mustard | cytosol | 8.33 | 25.66 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 17.31 | 25.47 |
| PGSC0003DMT400015030 | Potato | cytosol | 15.6 | 24.66 |
| Solyc08g013780.1.1 | Tomato | cytosol | 6.41 | 24.39 |
| CDY21990 | Canola | cytosol | 9.83 | 23.96 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 18.38 | 23.18 |
| PGSC0003DMT400054358 | Potato | cytosol | 16.45 | 22.71 |
| Solyc08g013820.2.1 | Tomato | cytosol | 17.95 | 22.58 |
| CDY21983 | Canola | cytosol | 11.32 | 18.73 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 11.97 | 18.48 |
| Bra034194.1-P | Field mustard | cytosol | 18.8 | 16.45 |
| CDY22112 | Canola | cytosol | 16.88 | 16.39 |
| CDY09154 | Canola | plastid | 18.38 | 15.17 |
| Bra020205.1-P | Field mustard | plastid | 18.38 | 15.17 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G412900.1 | EnsemblPlantsGene:TraesCS3D01G412900 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| ncoils:Coil | PANTHER:PTHR44078 | PFAM:PF12937 | SEG:seg | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:525535944..525538715
Molecular Weight (calculated)
52926.6 Da
IEP (calculated)
4.468
GRAVY (calculated)
-0.501
Length
468 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNPPASPSG DGGSRISGRP TAGGNREERG AFLPIADIRR IMRKAIPPNG EIDEEAAQAL VPEARGDGCK RAKREAMAGD DLLPEMAKQG FQAYPHKNRV
101: ELPCTMEAGP NPLPVSDVRD WSELPLDALS AIFMKLGTIE ILMGAGLVCR SWLVAAKSPE LWRFVDMTRH KLVFSKGGNV MCQMAKVAID RSDGRMESFW
201: AQKFVTSELL NYIASRCNSL KSIRLIGAYY FWDDEDVVIK LAAKCPMLEE IEYSGQKLTW DFFKGIGAAR PTLKRLRVCL PWYDSDSIER EIRMEQRQND
301: EEEEEEEEEE EEPYEAWEAR HNEEAFAIAE SLHELRLLQM AGYGLTKEGV YAILEGCPHL EFLDLRECGH LLVDAELKAR CANIKHVRLP GAWPHAHCPE
401: LDTIKEDEGE VIEMPNLYEI EAQALHNEAA MENDDYGENY WDDYSLPSSP GSPAPTYSMD DPRYYWEL
101: ELPCTMEAGP NPLPVSDVRD WSELPLDALS AIFMKLGTIE ILMGAGLVCR SWLVAAKSPE LWRFVDMTRH KLVFSKGGNV MCQMAKVAID RSDGRMESFW
201: AQKFVTSELL NYIASRCNSL KSIRLIGAYY FWDDEDVVIK LAAKCPMLEE IEYSGQKLTW DFFKGIGAAR PTLKRLRVCL PWYDSDSIER EIRMEQRQND
301: EEEEEEEEEE EEPYEAWEAR HNEEAFAIAE SLHELRLLQM AGYGLTKEGV YAILEGCPHL EFLDLRECGH LLVDAELKAR CANIKHVRLP GAWPHAHCPE
401: LDTIKEDEGE VIEMPNLYEI EAQALHNEAA MENDDYGENY WDDYSLPSSP GSPAPTYSMD DPRYYWEL
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.