Factsheet for Bra000816.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62000	Canola	plastid	73.85	72.95
Bra000817.1-P	Field mustard	plastid	36.62	66.11
Bra034231.1-P	Field mustard	cytosol, plastid	50.77	63.71
Bra034226.1-P	Field mustard	cytosol	55.38	62.5
Bra034230.1-P	Field mustard	cytosol	49.23	60.84
Bra034229.1-P	Field mustard	cytosol	51.08	60.14
Bra034228.1-P	Field mustard	cytosol	54.46	59.6
Bra030690.1-P	Field mustard	cytosol	48.0	55.52
Bra031582.1-P	Field mustard	nucleus	58.77	54.57
Bra034227.1-P	Field mustard	plastid	53.23	54.4
Bra030342.1-P	Field mustard	cytosol	37.54	52.36
Bra000723.1-P	Field mustard	cytosol	23.38	50.0
KRH21099	Soybean	cytosol	44.0	45.98
VIT_10s0003g04300.t01	Wine grape	cytosol	44.31	44.86
KRH11147	Soybean	cytosol	42.15	43.08
PGSC0003DMT400058969	Potato	cytosol	11.69	42.7
Solyc08g013800.2.1	Tomato	cytosol	37.54	41.5
Solyc08g006940.2.1	Tomato	cytosol	38.77	40.51
PGSC0003DMT400015035	Potato	cytosol	37.54	39.87
PGSC0003DMT400015030	Potato	cytosol	36.0	39.53
PGSC0003DMT400016134	Potato	cytosol	35.08	39.31
PGSC0003DMT400052833	Potato	cytosol	33.23	39.27
Solyc08g013780.1.1	Tomato	cytosol	14.77	39.02
PGSC0003DMT400090939	Potato	cytosol	35.69	38.28
Bra020205.1-P	Field mustard	plastid	65.85	37.74
TraesCS7A01G304900.1	Wheat	mitochondrion, nucleus	30.77	37.45
TraesCS3B01G443100.1	Wheat	cytosol	29.54	37.21
TraesCS5B01G466500.1	Wheat	extracellular	11.69	36.19
TraesCS5B01G081700.1	Wheat	cytosol	18.46	36.14
Bra034194.1-P	Field mustard	cytosol	59.38	36.07
PGSC0003DMT400054358	Potato	cytosol	36.62	35.1
TraesCS5D01G468200.1	Wheat	cytosol, plasma membrane, plastid	21.54	34.65
TraesCS7A01G484100.1	Wheat	cytosol	10.46	34.34
Zm00001d024252_P001	Maize	cytosol	27.69	34.09
TraesCS5D01G484300.1	Wheat	cytosol	21.23	33.99
TraesCS5D01G088900.1	Wheat	cytosol	32.0	33.99
TraesCS5A01G471800.1	Wheat	cytosol	20.92	33.5
Solyc08g013820.2.1	Tomato	cytosol	38.15	33.33
TraesCS1D01G126200.1	Wheat	nucleus	29.85	33.33
TraesCS3B01G443800.1	Wheat	nucleus	35.38	33.33
TraesCS5A01G075400.1	Wheat	cytosol	31.38	33.33
TraesCS5B01G484300.1	Wheat	cytosol	20.62	33.0
TraesCS4B01G183800.1	Wheat	cytosol	30.77	32.68
TraesCS1A01G128000.1	Wheat	cytosol	23.38	32.62
TraesCS7B01G205200.1	Wheat	mitochondrion	34.46	32.37
Os08t0193200-00	Rice	cytosol	11.38	32.17
Zm00001d010914_P001	Maize	cytosol	32.31	32.11
TraesCS3A01G410700.1	Wheat	mitochondrion	34.46	32.0
TraesCS7A01G193100.1	Wheat	cytosol	30.15	31.82
TraesCS7D01G300400.1	Wheat	mitochondrion, nucleus	33.85	31.79
TraesCS3B01G444000.1	Wheat	nucleus	34.15	31.71
TraesCS5B01G484500.1	Wheat	cytosol	20.0	31.71
TraesCS4B01G183700.1	Wheat	cytosol	28.62	31.53
TraesCS7B01G098400.1	Wheat	cytosol	29.85	31.49
TraesCS3D01G405300.1	Wheat	nucleus	33.85	31.43
TraesCS5D01G100900.1	Wheat	endoplasmic reticulum	16.62	31.4
HORVU0Hr1G019800.1	Barley	cytosol	29.85	31.29
TraesCS3A01G411000.1	Wheat	nucleus	32.62	31.27
EES14679	Sorghum	nucleus	32.92	31.1
EES17669	Sorghum	cytosol	31.69	31.02
TraesCS7D01G194400.1	Wheat	extracellular	30.15	31.01
Os02t0317500-01	Rice	cytosol	31.38	30.91
Os11t0637300-00	Rice	cytosol	11.38	30.83
TraesCS5B01G094800.1	Wheat	endoplasmic reticulum	16.31	30.81
HORVU5Hr1G020150.1	Barley	mitochondrion	32.0	30.68
HORVU1Hr1G004970.3	Barley	cytosol	30.46	30.56
TraesCS2A01G313400.1	Wheat	cytosol	29.23	30.55
TraesCS1D01G034100.1	Wheat	cytosol	30.77	30.49
Os08t0194350-00	Rice	cytosol	24.92	30.45
TraesCS5B01G484600.1	Wheat	cytosol	19.38	30.29
TraesCS7D01G194300.1	Wheat	cytosol	28.0	30.23
KXG24675	Sorghum	cytosol	26.77	30.21
TraesCS1A01G033100.1	Wheat	cytosol	30.46	30.18
Os08t0195800-00	Rice	cytosol, mitochondrion, nucleus	32.0	30.06
TraesCS2B01G332200.1	Wheat	cytosol	28.92	30.03
TraesCS7B01G287400.1	Wheat	cytosol	29.85	30.03
HORVU2Hr1G027710.1	Barley	cytosol	26.77	29.9
TraesCS2D01G311900.1	Wheat	cytosol	28.62	29.71
Zm00001d024265_P001	Maize	cytosol	27.38	29.67
Os02t0317300-01	Rice	cytosol	29.85	29.57
TraesCS1B01G041200.1	Wheat	cytosol	29.85	29.39
TraesCS7D01G381100.1	Wheat	mitochondrion	30.77	29.33
KXG24670	Sorghum	cytosol	28.31	29.02
TraesCS2B01G385500.1	Wheat	cytosol, plasma membrane, plastid	20.0	29.02
HORVU2Hr1G027770.2	Barley	mitochondrion	26.77	28.81
TraesCS2A01G153600.1	Wheat	cytosol, plastid	27.08	28.48
TraesCS2D01G070200.1	Wheat	cytosol	28.31	28.4
Os08t0193500-00	Rice	cytosol	19.08	28.31
TraesCS2B01G178700.1	Wheat	plastid	26.77	28.16
TraesCS5B01G484100.1	Wheat	cytosol	19.38	28.12
TraesCS2D01G159000.1	Wheat	plastid	26.15	27.51
TraesCS5B01G484200.1	Wheat	cytosol, peroxisome, plastid	16.31	27.46
OQU80048	Sorghum	cytosol	24.0	27.37
TraesCS2A01G071400.1	Wheat	cytosol	8.92	27.36
TraesCS2B01G085200.1	Wheat	cytosol	27.08	27.16
TraesCS7B01G480000.1	Wheat	cytosol	26.77	27.1
TraesCS2D01G011000.1	Wheat	cytosol	26.46	27.04
OQU80176	Sorghum	mitochondrion	18.46	26.91
TraesCS2B01G085400.1	Wheat	cytosol	26.46	26.88
Zm00001d046526_P001	Maize	plastid	23.38	26.86
HORVU2Hr1G020470.1	Barley	mitochondrion	9.54	26.27
Zm00001d024764_P001	Maize	cytosol	28.62	26.05
TraesCS7D01G555100.1	Wheat	cytosol	26.77	25.97
TraesCS6B01G067700.1	Wheat	plastid	21.23	25.75
TraesCS7D01G203600.1	Wheat	plastid	26.77	25.51
TraesCS4D01G274100.1	Wheat	cytosol	11.08	25.35
TraesCS7D01G203500.1	Wheat	plastid	26.46	25.29
TraesCS5B01G284300.1	Wheat	cytosol	26.77	25.29
TraesCS3D01G413100.1	Wheat	cytosol, endoplasmic reticulum, vacuole	27.08	25.29
HORVU2Hr1G020540.2	Barley	cytosol	21.85	25.27
Os08t0193900-01	Rice	nucleus	30.77	25.25
Zm00001d046527_P001	Maize	extracellular, mitochondrion, nucleus	16.92	24.77
TraesCS5D01G292400.1	Wheat	cytosol	26.15	24.71
TraesCS3B01G452600.1	Wheat	extracellular	24.92	24.55
HORVU6Hr1G014660.1	Barley	cytosol	16.0	24.41
HORVU2Hr1G077990.2	Barley	plastid	28.0	24.33
TraesCS2A01G119000.1	Wheat	nucleus	32.31	24.31
OQU80174	Sorghum	cytosol	9.85	23.88
TraesCSU01G016500.1	Wheat	mitochondrion	25.85	23.73
TraesCS6A01G090000.1	Wheat	mitochondrion	25.54	23.51
TraesCS6B01G112100.1	Wheat	mitochondrion	24.92	23.14
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	21.54	23.1
TraesCS6A01G089600.1	Wheat	cytosol, mitochondrion	23.69	22.58
TraesCS6B01G112000.1	Wheat	mitochondrion	23.69	22.32
EES14677	Sorghum	cytosol, mitochondrion, nucleus, plastid	32.0	22.13
TraesCS6B01G310200.1	Wheat	plastid	24.0	21.61
TraesCS3B01G452400.1	Wheat	cytosol	28.92	21.12
TraesCS3D01G413000.1	Wheat	cytosol	28.31	21.0
TraesCSU01G016600.1	Wheat	mitochondrion	17.23	20.74
Os08t0193300-00	Rice	cytosol	21.23	20.72
Os08t0191300-00	Rice	cytosol, golgi	16.31	20.62
TraesCS6B01G067500.1	Wheat	cytosol, extracellular	15.38	20.58
Os08t0195000-00	Rice	cytosol, peroxisome, plastid	15.69	20.4
TraesCS3D01G412900.1	Wheat	cytosol, plastid	29.23	20.3
TraesCS3B01G452300.1	Wheat	plastid	28.92	20.22
TraesCS6A01G051000.1	Wheat	plastid	22.77	19.89
TraesCS3B01G452500.1	Wheat	cytosol	28.92	19.87
TraesCS3A01G417500.1	Wheat	cytosol	23.69	19.69
HORVU3Hr1G092720.1	Barley	cytosol, mitochondrion, nucleus	28.62	19.62
HORVU6Hr1G070690.2	Barley	extracellular, mitochondrion, plasma membrane	17.85	19.4
TraesCS3A01G417400.1	Wheat	cytosol	29.23	19.15
HORVU6Hr1G070700.2	Barley	mitochondrion	22.77	18.69
Os08t0195900-00	Rice	cytosol, mitochondrion, nucleus, plastid	16.92	18.21
TraesCS5D01G484100.1	Wheat	cytosol	19.38	16.98
Os08t0196200-01	Rice	cytosol	8.31	9.85
Os08t0194000-00	Rice	cytosol, vacuole	1.54	1.32

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra000816	EnsemblPlants:Bra000816.1	EnsemblPlants:Bra000816.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	UniProt:M4C9D7	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR44078
PANTHER:PTHR44078:SF5	SMART:SM00256	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00025404BD	SEG:seg

Description

AT4G05460 (E=1e-090) | F-box family protein (FBL20)

Coordinates

chrA03:-:13325374..13326461

Molecular Weight (calculated)

36577.3 Da

IEP (calculated)

4.525

GRAVY (calculated)

-0.328

Length

325 amino acids

Sequence
(BLAST)

001: MASSSLPLPS SSERLSLSFR SPPSPSLTPE MKDGEYSNWS ELPTELTSSI LQRLGPIEVL ENAQKVCTSW RRVSKDPAMW RKIVMHKVEG LGCNLDIMCR
101: HAVDRSQGGL VEIEIWDFGT DSLINYIADS SSGLRSLKLA KSFQVTDDGL TEAVVKLPYL EELEVSNTSI LSAKSLKVLG QSCPNLKTFK LNQRGFLRPR
201: IQSDDDALAI AETMHGLRHL QLFGNILSDV GLNAILDNCP NLEHLDLRQC FNVNLLGDLE KRCDERIKVF RRPNDSTYDY PYDATAIDIF SDEVVFRLMP
301: DANYYPDLMA GSDYSDYDPT DDYDF

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.