Factsheet for TraesCS2B01G178700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	TraesCS3A01G457400.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3B01G497300.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3D01G450200.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G159000.1	Wheat	plastid	95.15	95.15
TraesCS2A01G153600.1	Wheat	cytosol, plastid	91.59	91.59
HORVU2Hr1G027710.1	Barley	cytosol	82.85	87.97
HORVU2Hr1G027770.2	Barley	mitochondrion	85.11	87.09
TraesCS5B01G466500.1	Wheat	extracellular	21.36	62.86
Os11t0637300-00	Rice	cytosol	21.68	55.83
TraesCS5B01G484500.1	Wheat	cytosol	33.66	50.73
TraesCS5B01G094800.1	Wheat	endoplasmic reticulum	27.51	49.42
TraesCS5B01G484300.1	Wheat	cytosol	30.74	46.8
TraesCS5B01G484600.1	Wheat	cytosol	30.74	45.67
TraesCS5B01G081700.1	Wheat	cytosol	23.3	43.37
TraesCS2B01G385500.1	Wheat	cytosol, plasma membrane, plastid	31.07	42.86
TraesCS5B01G484100.1	Wheat	cytosol	31.07	42.86
TraesCS5B01G484200.1	Wheat	cytosol, peroxisome, plastid	26.21	41.97
TraesCS7B01G480000.1	Wheat	cytosol	43.04	41.43
TraesCS5B01G284300.1	Wheat	cytosol	44.98	40.41
TraesCS3B01G443100.1	Wheat	cytosol	32.69	39.15
CDY21988	Canola	cytosol	18.45	37.75
TraesCS4B01G183700.1	Wheat	cytosol	33.66	35.25
AT4G03630.1	Thale cress	cytosol	24.27	34.09
CDY48578	Canola	cytosol	27.18	33.47
Bra034230.1-P	Field mustard	cytosol	28.48	33.46
Bra034229.1-P	Field mustard	cytosol	29.77	33.33
Os08t0195000-00	Rice	cytosol, peroxisome, plastid	26.86	33.2
CDX77948	Canola	cytosol	18.12	33.14
TraesCS1B01G041200.1	Wheat	cytosol	35.28	33.03
TraesCS4B01G183800.1	Wheat	cytosol	32.69	33.01
CDX99649	Canola	cytosol	24.6	32.62
CDY15937	Canola	cytosol	24.27	32.19
TraesCS7B01G098400.1	Wheat	cytosol	32.04	32.14
CDX73787	Canola	cytosol	26.54	32.03
TraesCS3B01G444000.1	Wheat	nucleus	36.25	32.0
TraesCS3B01G443800.1	Wheat	nucleus	35.6	31.88
Bra034226.1-P	Field mustard	cytosol	29.45	31.6
TraesCS7B01G205200.1	Wheat	mitochondrion	35.28	31.5
Bra030342.1-P	Field mustard	cytosol	23.62	31.33
TraesCS2B01G332200.1	Wheat	cytosol	31.72	31.31
CDY48577	Canola	cytosol	28.48	31.21
TraesCS7B01G287400.1	Wheat	cytosol	32.36	30.96
CDY21333	Canola	nucleus, plastid	29.45	30.95
CDY48576	Canola	cytosol	29.45	30.64
TraesCS2B01G085200.1	Wheat	cytosol	32.04	30.56
CDY21986	Canola	cytosol, plastid	29.45	30.33
TraesCS2B01G085400.1	Wheat	cytosol	31.39	30.31
Bra034228.1-P	Field mustard	cytosol	28.8	29.97
Bra034227.1-P	Field mustard	plastid	30.74	29.87
CDY48575	Canola	plastid	30.42	29.65
CDY48580	Canola	cytosol	29.45	29.64
KRH21099	Soybean	cytosol	29.77	29.58
CDY48574	Canola	cytosol	28.48	29.53
AT4G05497.1	Thale cress	plastid	23.3	29.27
Os08t0191300-00	Rice	cytosol, golgi	24.27	29.18
PGSC0003DMT400016134	Potato	cytosol	27.18	28.97
Bra034231.1-P	Field mustard	cytosol, plastid	24.27	28.96
CDX90789	Canola	cytosol	28.16	28.9
Bra000817.1-P	Field mustard	plastid	16.83	28.89
AT4G05460.1	Thale cress	cytosol	28.16	28.81
KRH11147	Soybean	cytosol	29.45	28.62
Bra030690.1-P	Field mustard	cytosol	25.89	28.47
CDY15618	Canola	cytosol	25.89	28.47
Solyc08g006940.2.1	Tomato	cytosol	28.48	28.3
TraesCS3B01G452600.1	Wheat	extracellular	30.1	28.18
CDY59275	Canola	plastid	29.13	28.04
AT4G05490.1	Thale cress	plastid	27.83	28.01
TraesCS6B01G067700.1	Wheat	plastid	24.27	27.99
CDX86473	Canola	cytosol	22.98	27.73
VIT_10s0003g04300.t01	Wine grape	cytosol	28.48	27.41
AT5G52480.1	Thale cress	cytosol	21.36	27.39
CDY62000	Canola	plastid	29.13	27.36
PGSC0003DMT400052833	Potato	cytosol	24.27	27.27
AT4G05475.1	Thale cress	cytosol	27.18	27.18
CDY21989	Canola	cytosol	7.12	27.16
Solyc08g013800.2.1	Tomato	cytosol	25.57	26.87
AT4G05470.1	Thale cress	cytosol, plastid	26.54	26.8
Bra000816.1-P	Field mustard	plastid	28.16	26.77
CDY09910	Canola	nucleus	27.51	26.56
CDY10283	Canola	cytosol	26.86	26.43
PGSC0003DMT400015035	Potato	cytosol	25.89	26.14
CDY21990	Canola	cytosol	16.18	26.04
PGSC0003DMT400058969	Potato	cytosol	7.44	25.84
PGSC0003DMT400090939	Potato	cytosol	25.24	25.74
TraesCS6B01G310200.1	Wheat	plastid	29.77	25.48
PGSC0003DMT400054358	Potato	cytosol	27.83	25.37
CDY06267	Canola	nucleus	28.48	25.29
PGSC0003DMT400015030	Potato	cytosol	23.95	25.0
Bra031582.1-P	Field mustard	nucleus	28.16	24.86
Solyc08g013780.1.1	Tomato	cytosol	9.71	24.39
TraesCS6B01G112000.1	Wheat	mitochondrion	27.18	24.35
TraesCS3B01G452400.1	Wheat	cytosol	34.63	24.04
TraesCS3B01G452500.1	Wheat	cytosol	36.25	23.68
TraesCS3B01G452300.1	Wheat	plastid	35.28	23.44
TraesCS6B01G067500.1	Wheat	cytosol, extracellular	17.48	22.22
TraesCS6B01G112100.1	Wheat	mitochondrion	24.92	22.0
Bra000723.1-P	Field mustard	cytosol	10.68	21.71
Solyc08g013820.2.1	Tomato	cytosol	25.24	20.97
CDY21983	Canola	cytosol	16.18	17.67
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	16.5	16.83
Bra034194.1-P	Field mustard	cytosol	27.83	16.07
Bra020205.1-P	Field mustard	plastid	28.8	15.7
CDY09154	Canola	plastid	28.8	15.7
CDY22112	Canola	cytosol	23.62	15.15

Protein Annotations

EnsemblPlants:TraesCS2B01G178700.1	EnsemblPlantsGene:TraesCS2B01G178700	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2
PANTHER:PTHR44078	PANTHER:PTHR44078:SF5	PFAM:PF07723	PFAM:PF12937	PFscan:PS50181	SEG:seg
SUPFAM:SSF52047	SUPFAM:SSF81383	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr2B:+:153760061..153761866

Molecular Weight (calculated)

34839.5 Da

IEP (calculated)

6.833

GRAVY (calculated)

-0.033

Length

309 amino acids

Sequence
(BLAST)

001: MLQASHQSPV MMSGASFVVS RGVCRRRLSH SHEMEVQPEA VRDWSELPLD VLASVFAKLG AVDILMGAGL VCHSWLEAAK VPSLWRYVDM EHHDVLRGKK
101: KKRRDVLCAM AKAAVDRSNG ELEVFAGSEF VTDQLLKYIA ERSPSLKSLS LDYCNVTNEA FTELIIKLPL LEELLISLCP FVDGDAYEVT SRACVQLKRL
201: MLRQGPYGGI RDGALGIEMM HELRYLTLVN SDIMTEELVA IIDGCPHMER LCVRNCSNIV VDGTLRAKCS RIKTLILPPL QHMQNVRSRY IFHPDDSVFT
301: DKFDDWRSS

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.