Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G484300.1 | Wheat | cytosol | 88.67 | 88.67 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 87.68 | 87.68 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 36.45 | 70.48 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 60.59 | 60.0 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 64.53 | 58.48 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 56.65 | 55.29 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 59.11 | 53.57 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 39.9 | 47.09 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 44.34 | 46.63 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 29.56 | 36.14 |
| Zm00001d024252_P001 | Maize | cytosol | 43.35 | 33.33 |
| KXG24675 | Sorghum | cytosol | 46.31 | 32.64 |
| CDY21988 | Canola | cytosol | 23.15 | 31.13 |
| TraesCS2B01G178700.1 | Wheat | plastid | 46.8 | 30.74 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 34.98 | 27.52 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 43.35 | 27.41 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 45.81 | 27.03 |
| CDX77948 | Canola | cytosol | 22.17 | 26.63 |
| Bra034230.1-P | Field mustard | cytosol | 32.02 | 24.71 |
| CDX99649 | Canola | cytosol | 28.08 | 24.46 |
| CDY15937 | Canola | cytosol | 27.59 | 24.03 |
| Bra034229.1-P | Field mustard | cytosol | 32.51 | 23.91 |
| Bra030342.1-P | Field mustard | cytosol | 27.09 | 23.61 |
| CDY21989 | Canola | cytosol | 9.36 | 23.46 |
| CDY48577 | Canola | cytosol | 32.51 | 23.4 |
| AT4G05497.1 | Thale cress | plastid | 28.08 | 23.17 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 39.41 | 23.12 |
| CDY48578 | Canola | cytosol | 28.57 | 23.11 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 35.47 | 23.0 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 34.48 | 22.88 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 35.96 | 22.74 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 36.95 | 22.73 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 33.0 | 22.71 |
| Bra034226.1-P | Field mustard | cytosol | 32.02 | 22.57 |
| AT4G05490.1 | Thale cress | plastid | 33.99 | 22.48 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 38.42 | 22.29 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 37.44 | 22.03 |
| CDY21990 | Canola | cytosol | 20.69 | 21.88 |
| CDX73787 | Canola | cytosol | 27.59 | 21.88 |
| CDY21333 | Canola | nucleus, plastid | 31.53 | 21.77 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 34.48 | 21.67 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 32.51 | 21.43 |
| CDY62000 | Canola | plastid | 34.48 | 21.28 |
| CDY48576 | Canola | cytosol | 31.03 | 21.21 |
| CDX86473 | Canola | cytosol | 26.6 | 21.09 |
| CDY21986 | Canola | cytosol, plastid | 31.03 | 21.0 |
| CDY15618 | Canola | cytosol | 29.06 | 21.0 |
| Bra030690.1-P | Field mustard | cytosol | 29.06 | 21.0 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 33.5 | 20.99 |
| CDX90789 | Canola | cytosol | 31.03 | 20.93 |
| AT4G05460.1 | Thale cress | cytosol | 31.03 | 20.86 |
| CDY48580 | Canola | cytosol | 31.53 | 20.85 |
| CDY48575 | Canola | plastid | 32.51 | 20.82 |
| KRH11147 | Soybean | cytosol | 32.51 | 20.75 |
| PGSC0003DMT400052833 | Potato | cytosol | 28.08 | 20.73 |
| CDY10283 | Canola | cytosol | 32.02 | 20.7 |
| PGSC0003DMT400016134 | Potato | cytosol | 29.56 | 20.69 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 32.51 | 20.62 |
| Bra000816.1-P | Field mustard | plastid | 33.0 | 20.62 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 33.5 | 20.61 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 31.03 | 20.59 |
| KRH21099 | Soybean | cytosol | 31.53 | 20.58 |
| Bra034228.1-P | Field mustard | cytosol | 30.05 | 20.54 |
| TraesCS6B01G067700.1 | Wheat | plastid | 27.09 | 20.52 |
| CDY48574 | Canola | cytosol | 30.05 | 20.47 |
| Bra034227.1-P | Field mustard | plastid | 32.02 | 20.44 |
| PGSC0003DMT400015035 | Potato | cytosol | 30.54 | 20.26 |
| PGSC0003DMT400054358 | Potato | cytosol | 33.5 | 20.06 |
| AT4G03630.1 | Thale cress | cytosol | 21.67 | 20.0 |
| Solyc08g013800.2.1 | Tomato | cytosol | 28.57 | 19.73 |
| CDY59275 | Canola | plastid | 31.03 | 19.63 |
| AT4G05475.1 | Thale cress | cytosol | 29.56 | 19.42 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 24.63 | 19.3 |
| PGSC0003DMT400015030 | Potato | cytosol | 28.08 | 19.26 |
| PGSC0003DMT400090939 | Potato | cytosol | 28.57 | 19.14 |
| PGSC0003DMT400058969 | Potato | cytosol | 8.37 | 19.1 |
| TraesCS3B01G452300.1 | Wheat | plastid | 43.35 | 18.92 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 32.02 | 18.84 |
| TraesCS6B01G310200.1 | Wheat | plastid | 33.5 | 18.84 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 40.39 | 18.43 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 42.36 | 18.18 |
| Solyc08g006940.2.1 | Tomato | cytosol | 27.59 | 18.01 |
| CDY06267 | Canola | nucleus | 30.54 | 17.82 |
| CDY09910 | Canola | nucleus | 28.08 | 17.81 |
| Bra000817.1-P | Field mustard | plastid | 15.76 | 17.78 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 30.54 | 17.71 |
| Bra031582.1-P | Field mustard | nucleus | 30.05 | 17.43 |
| Solyc08g013820.2.1 | Tomato | cytosol | 30.54 | 16.67 |
| Bra000723.1-P | Field mustard | cytosol | 11.82 | 15.79 |
| AT5G52480.1 | Thale cress | cytosol | 18.72 | 15.77 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 15.27 | 12.76 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 18.23 | 12.21 |
| Solyc08g013780.1.1 | Tomato | cytosol | 7.39 | 12.2 |
| Bra034194.1-P | Field mustard | cytosol | 31.53 | 11.96 |
| CDY22112 | Canola | cytosol | 26.6 | 11.2 |
| CDY09154 | Canola | plastid | 31.03 | 11.11 |
| Bra020205.1-P | Field mustard | plastid | 31.03 | 11.11 |
| CDY21983 | Canola | cytosol | 12.81 | 9.19 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G484300.1 | EnsemblPlantsGene:TraesCS5B01G484300 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR44078 | PFAM:PF12937 | PFscan:PS50181 | SEG:seg | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:655898726..655901184
Molecular Weight (calculated)
22861.0 Da
IEP (calculated)
4.694
GRAVY (calculated)
0.265
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDAAPSARD WSSLPLDALS SIFVRLGALD VLMGAGLVCR SWLEAANFPD VWRSIDMVKH DSVFLKGDAV LREMAKVVID RSDGQLRVFV GGMFVTDELI
101: KYIMERSPLL TTLRLVSCFG VFSKQLASVI KESPLLELHS LELENIDLTM RELTTILESC PILEVLGLHY CFLINCSDEH TLRAKFTRIK SMTLKWDDEC
201: CVD
101: KYIMERSPLL TTLRLVSCFG VFSKQLASVI KESPLLELHS LELENIDLTM RELTTILESC PILEVLGLHY CFLINCSDEH TLRAKFTRIK SMTLKWDDEC
201: CVD
001: MSSSSSSPFP QAMKNGEYRN WAELPPELTS SILLRLGAIE ILQNAQRVCK SWRRVCQDPS MWRKIDIRIK ENLVNSVELF YVIEPLCCRA VDLSQGGLLE
101: INIDYLVNTS FLNYIADRSS NLRRLGVVDC APVLSRGVVE AAMKLPLLEE LDITYKSSIR EQELKVVGQS CPNLRTLKLN CTGDVKCCDK VALAIAETMP
201: GLRHLQLFRN GLSETGLNAI LEGCPHLKNL GLHQCLNINI VGDIVK
101: INIDYLVNTS FLNYIADRSS NLRRLGVVDC APVLSRGVVE AAMKLPLLEE LDITYKSSIR EQELKVVGQS CPNLRTLKLN CTGDVKCCDK VALAIAETMP
201: GLRHLQLFRN GLSETGLNAI LEGCPHLKNL GLHQCLNINI VGDIVK
Arabidopsis Description
FBL9Putative F-box/LRR-repeat protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9V8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.