Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- mitochondrion 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G067700.1 | Wheat | plastid | 61.73 | 55.97 |
| TraesCS6A01G051000.1 | Wheat | plastid | 85.6 | 55.91 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 52.67 | 37.1 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 49.79 | 34.57 |
| TraesCS7D01G203500.1 | Wheat | plastid | 39.92 | 28.53 |
| TraesCS7D01G203600.1 | Wheat | plastid | 38.27 | 27.27 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 23.87 | 26.13 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 34.57 | 24.28 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 31.69 | 23.84 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 32.51 | 22.9 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 24.28 | 22.87 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 32.92 | 22.86 |
| AT4G03630.1 | Thale cress | cytosol | 20.58 | 22.73 |
| Bra000817.1-P | Field mustard | plastid | 16.05 | 21.67 |
| AT5G52480.1 | Thale cress | cytosol | 20.58 | 20.75 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 25.93 | 20.59 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 24.69 | 20.34 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 25.51 | 20.13 |
| TraesCS6B01G310200.1 | Wheat | plastid | 29.63 | 19.94 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 25.1 | 19.49 |
| Zm00001d046526_P001 | Maize | plastid | 22.63 | 19.43 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 26.34 | 19.39 |
| CDY15937 | Canola | cytosol | 18.52 | 19.31 |
| CDX99649 | Canola | cytosol | 18.11 | 18.88 |
| Bra030342.1-P | Field mustard | cytosol | 18.11 | 18.88 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 12.76 | 18.67 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 24.69 | 18.52 |
| CDY21989 | Canola | cytosol | 6.17 | 18.52 |
| CDY15618 | Canola | cytosol | 21.4 | 18.51 |
| Bra030690.1-P | Field mustard | cytosol | 21.4 | 18.51 |
| Bra000723.1-P | Field mustard | cytosol | 11.52 | 18.42 |
| CDX86473 | Canola | cytosol | 19.34 | 18.36 |
| CDX90789 | Canola | cytosol | 22.63 | 18.27 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 23.87 | 18.12 |
| CDY21333 | Canola | nucleus, plastid | 21.81 | 18.03 |
| CDY48580 | Canola | cytosol | 22.63 | 17.92 |
| CDY48574 | Canola | cytosol | 21.81 | 17.79 |
| KRH21099 | Soybean | cytosol | 22.63 | 17.68 |
| CDY48578 | Canola | cytosol | 18.11 | 17.53 |
| Bra034230.1-P | Field mustard | cytosol | 18.93 | 17.49 |
| TraesCS2B01G178700.1 | Wheat | plastid | 22.22 | 17.48 |
| KRH11147 | Soybean | cytosol | 22.63 | 17.3 |
| CDY21988 | Canola | cytosol | 10.7 | 17.22 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 22.63 | 17.13 |
| Solyc08g013780.1.1 | Tomato | cytosol | 8.64 | 17.07 |
| CDY48575 | Canola | plastid | 22.22 | 17.03 |
| Bra034229.1-P | Field mustard | cytosol | 19.34 | 17.03 |
| Bra034226.1-P | Field mustard | cytosol | 20.16 | 17.01 |
| Bra034227.1-P | Field mustard | plastid | 22.22 | 16.98 |
| AT4G05460.1 | Thale cress | cytosol | 20.99 | 16.89 |
| CDX73787 | Canola | cytosol | 17.7 | 16.8 |
| Solyc08g006940.2.1 | Tomato | cytosol | 21.4 | 16.72 |
| Bra034228.1-P | Field mustard | cytosol | 20.16 | 16.5 |
| CDY48576 | Canola | cytosol | 20.16 | 16.5 |
| PGSC0003DMT400015035 | Potato | cytosol | 20.58 | 16.34 |
| CDY09910 | Canola | nucleus | 21.4 | 16.25 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 21.4 | 16.2 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 14.81 | 16.07 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 14.81 | 16.07 |
| PGSC0003DMT400090939 | Potato | cytosol | 19.75 | 15.84 |
| CDY62000 | Canola | plastid | 21.4 | 15.81 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 11.11 | 15.7 |
| CDY21986 | Canola | cytosol, plastid | 19.34 | 15.67 |
| Solyc08g013800.2.1 | Tomato | cytosol | 18.93 | 15.65 |
| AT4G05490.1 | Thale cress | plastid | 19.75 | 15.64 |
| CDY48577 | Canola | cytosol | 18.11 | 15.6 |
| AT4G05475.1 | Thale cress | cytosol | 19.75 | 15.53 |
| AT4G05497.1 | Thale cress | plastid | 15.64 | 15.45 |
| Bra000816.1-P | Field mustard | plastid | 20.58 | 15.38 |
| PGSC0003DMT400052833 | Potato | cytosol | 17.28 | 15.27 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 12.76 | 15.27 |
| CDY59275 | Canola | plastid | 20.16 | 15.26 |
| CDY06267 | Canola | nucleus | 21.81 | 15.23 |
| PGSC0003DMT400015030 | Potato | cytosol | 18.52 | 15.2 |
| Bra031582.1-P | Field mustard | nucleus | 21.81 | 15.14 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 12.76 | 15.12 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 16.05 | 15.06 |
| PGSC0003DMT400016134 | Potato | cytosol | 17.7 | 14.83 |
| CDX77948 | Canola | cytosol | 10.29 | 14.79 |
| CDY10283 | Canola | cytosol | 18.93 | 14.65 |
| PGSC0003DMT400058969 | Potato | cytosol | 5.35 | 14.61 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 12.35 | 14.42 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 18.11 | 14.38 |
| PGSC0003DMT400054358 | Potato | cytosol | 19.75 | 14.16 |
| CDY21983 | Canola | cytosol | 16.46 | 14.13 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 19.75 | 13.95 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 18.52 | 13.64 |
| Solyc08g013820.2.1 | Tomato | cytosol | 20.58 | 13.44 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 15.64 | 12.54 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 9.05 | 11.4 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 19.75 | 10.15 |
| TraesCS3B01G452300.1 | Wheat | plastid | 19.34 | 10.11 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 18.11 | 9.89 |
| CDY21990 | Canola | cytosol | 7.41 | 9.38 |
| Bra020205.1-P | Field mustard | plastid | 20.16 | 8.64 |
| CDY09154 | Canola | plastid | 20.16 | 8.64 |
| Bra034194.1-P | Field mustard | cytosol | 18.93 | 8.6 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 3.7 | 8.57 |
| CDY22112 | Canola | cytosol | 14.81 | 7.47 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G067500.1 | EnsemblPlantsGene:TraesCS6B01G067500 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44078 |
| PANTHER:PTHR44078:SF3 | SEG:seg | SUPFAM:SSF52047 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr6B:-:45571905..45572976
Molecular Weight (calculated)
27970.5 Da
IEP (calculated)
4.792
GRAVY (calculated)
-0.227
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRAALLLSQ GQGEAFLTNL ADDDILLLLA KQAPALKCLH LHRGYVSDEG FATEIKMLPL LEELEISKCP QIYSREVYEL VATACPLLKH FRHVSGKHCH
101: ADYAITFAAP RMCKLRSLDV VGCTFGREVL VAILDNCHDL QYLNMAVCNP IAIDNLPEKL AWMSMDDHDR YSSNYYDDYT GCKYCYPYKP RCRYCRPLSF
201: PQYEDDSYDD YCYYLGDGDD VDDAVLEEYE KILDIKSMRR YLS
101: ADYAITFAAP RMCKLRSLDV VGCTFGREVL VAILDNCHDL QYLNMAVCNP IAIDNLPEKL AWMSMDDHDR YSSNYYDDYT GCKYCYPYKP RCRYCRPLSF
201: PQYEDDSYDD YCYYLGDGDD VDDAVLEEYE KILDIKSMRR YLS
001: MRILSYNKPV LVNNPEAICR NAVDRSEGGL LEINIGDFGS DSLLTYIAER SSNLRSLRLM CSEITDDGFV QAVVKLPMLE ELEVSGISLS GESMKLAGLS
101: CPNLKTLMLN RLFYLSSDDD DHDAIAIAES MPKLRHLQLC GNKLTKTGLN AILDGCPHLE HLDLRQCINL VGNLEKRCFE KIKDLRRHND STSADYPFSF
201: ETYYFHWSRQ LAILKNALPM EEGAYNFDPI VEEAEYYLKL Y
101: CPNLKTLMLN RLFYLSSDDD DHDAIAIAES MPKLRHLQLC GNKLTKTGLN AILDGCPHLE HLDLRQCINL VGNLEKRCFE KIKDLRRHND STSADYPFSF
201: ETYYFHWSRQ LAILKNALPM EEGAYNFDPI VEEAEYYLKL Y
Arabidopsis Description
Nodulin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FHB4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.