Factsheet for Zm00001d046526_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d042193_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	Zm00001d042193_P001	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046527_P001	Maize	extracellular, mitochondrion, nucleus	51.94	66.22
TraesCS1D01G126200.1	Wheat	nucleus	32.51	31.62
Zm00001d024252_P001	Maize	cytosol	27.21	29.17
Zm00001d010914_P001	Maize	cytosol	33.22	28.75
TraesCS6B01G067700.1	Wheat	plastid	27.21	28.73
Bra000817.1-P	Field mustard	plastid	17.67	27.78
Zm00001d024265_P001	Maize	cytosol	29.33	27.67
CDX99649	Canola	cytosol	22.26	27.04
CDY48580	Canola	cytosol	29.33	27.04
Bra034231.1-P	Field mustard	cytosol, plastid	24.73	27.03
KRH21099	Soybean	cytosol	29.33	26.69
AT4G03630.1	Thale cress	cytosol	20.49	26.36
CDY48575	Canola	plastid	29.33	26.18
TraesCS1A01G128000.1	Wheat	cytosol	21.55	26.18
Bra030342.1-P	Field mustard	cytosol	21.55	26.18
CDY48574	Canola	cytosol	27.56	26.17
Bra034227.1-P	Field mustard	plastid	29.33	26.1
AT4G05497.1	Thale cress	plastid	22.61	26.02
CDY21989	Canola	cytosol	7.42	25.93
CDY15937	Canola	cytosol	21.2	25.75
CDY21986	Canola	cytosol, plastid	27.21	25.67
CDY59275	Canola	plastid	28.98	25.55
TraesCS7D01G203600.1	Wheat	plastid	30.74	25.51
Solyc08g013800.2.1	Tomato	cytosol	26.5	25.51
CDY21333	Canola	nucleus, plastid	26.5	25.51
PGSC0003DMT400015035	Potato	cytosol	27.56	25.49
CDX77948	Canola	cytosol	15.19	25.44
CDY09910	Canola	nucleus	28.62	25.31
Bra030690.1-P	Field mustard	cytosol	25.09	25.27
CDY15618	Canola	cytosol	25.09	25.27
AT4G05460.1	Thale cress	cytosol	26.86	25.17
CDY10283	Canola	cytosol	27.92	25.16
KRH11147	Soybean	cytosol	28.27	25.16
CDY48578	Canola	cytosol	22.26	25.1
AT4G05490.1	Thale cress	plastid	27.21	25.08
Bra034226.1-P	Field mustard	cytosol	25.44	25.0
PGSC0003DMT400015030	Potato	cytosol	26.15	25.0
CDX86473	Canola	cytosol	22.61	25.0
Bra034229.1-P	Field mustard	cytosol	24.38	25.0
Zm00001d024764_P001	Maize	cytosol	31.45	24.93
TraesCS6A01G090000.1	Wheat	mitochondrion	31.1	24.93
CDY48576	Canola	cytosol	26.15	24.92
TraesCS6B01G112100.1	Wheat	mitochondrion	30.74	24.86
TraesCS7D01G203500.1	Wheat	plastid	29.68	24.71
CDX73787	Canola	cytosol	22.26	24.61
CDX90789	Canola	cytosol	26.15	24.58
TraesCSU01G016500.1	Wheat	mitochondrion	30.74	24.58
CDY48577	Canola	cytosol	24.38	24.47
Bra034230.1-P	Field mustard	cytosol	22.61	24.33
CDY62000	Canola	plastid	28.27	24.32
VIT_10s0003g04300.t01	Wine grape	cytosol	27.56	24.3
Bra034228.1-P	Field mustard	cytosol	25.44	24.24
TraesCS6B01G310200.1	Wheat	plastid	30.74	24.1
CDY06267	Canola	nucleus	29.33	23.85
CDY21988	Canola	cytosol	12.72	23.84
AT4G05475.1	Thale cress	cytosol	25.8	23.62
AT4G05470.1	Thale cress	cytosol, plastid	25.44	23.53
Bra031582.1-P	Field mustard	nucleus	28.98	23.43
Bra000816.1-P	Field mustard	plastid	26.86	23.38
Bra000723.1-P	Field mustard	cytosol	12.37	23.03
TraesCS6A01G089600.1	Wheat	cytosol, mitochondrion	27.56	22.87
TraesCS6A01G051000.1	Wheat	plastid	30.04	22.85
Solyc08g013780.1.1	Tomato	cytosol	9.89	22.76
PGSC0003DMT400016134	Potato	cytosol	23.32	22.76
TraesCS6B01G067500.1	Wheat	cytosol, extracellular	19.43	22.63
TraesCS6B01G112000.1	Wheat	mitochondrion	27.56	22.61
Solyc08g006940.2.1	Tomato	cytosol	24.38	22.19
HORVU6Hr1G070700.2	Barley	mitochondrion	30.74	21.97
PGSC0003DMT400052833	Potato	cytosol	21.2	21.82
PGSC0003DMT400090939	Potato	cytosol	23.32	21.78
TraesCSU01G016600.1	Wheat	mitochondrion	20.49	21.48
PGSC0003DMT400054358	Potato	cytosol	25.09	20.94
CDY21990	Canola	cytosol	14.13	20.83
Solyc08g013820.2.1	Tomato	cytosol	26.86	20.43
AT5G52480.1	Thale cress	cytosol	17.31	20.33
PGSC0003DMT400058969	Potato	cytosol	6.36	20.22
CDY21983	Canola	cytosol	19.08	19.08
HORVU6Hr1G014660.1	Barley	cytosol	14.13	18.78
HORVU6Hr1G070690.2	Barley	extracellular, mitochondrion, plasma membrane	18.02	17.06
Bra034194.1-P	Field mustard	cytosol	27.92	14.77
Bra020205.1-P	Field mustard	plastid	28.98	14.46
CDY09154	Canola	plastid	28.98	14.46
CDY22112	Canola	cytosol	24.38	14.32
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	14.84	13.86

Protein Annotations

EnsemblPlants:Zm00001d046526_P001	EnsemblPlants:Zm00001d046526_T001	EnsemblPlantsGene:Zm00001d046526	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	PANTHER:PTHR44078	PFAM:PF12937	PFscan:PS50181	ProteinID:AQL04432.1	SEG:seg
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0008433195	UniProt:A0A1D6P348	MapMan:35.1	:

Description

F-box protein SKIP19

Coordinates

chr9:-:94029353..94031428

Molecular Weight (calculated)

32290.6 Da

IEP (calculated)

4.500

GRAVY (calculated)

-0.124

Length

283 amino acids

Sequence
(BLAST)

001: MANVSQAVAM PSSSRRHGGR HRAEPPSHSP APSEPRDWTA LPQDILITVF LKLGPREIML GAEFVCTTWR RVAVGEALLW RRIDMISAFY PARRSMARVA
101: LDRSAGQCEA FWEFCDSEML LYLVKSQLVA VLKKLPLLED LEVSPSLYFC STETFLEYVF QACPLLRKLR IRFRTGGYYC GDDWMMNEII GTFTRMSELR
201: SLALLDCDLT AEGLTAILDH SPVLEDLYIT GYFDGIMDAE LCAKCAKVKK LTLPDISDSD EEESDEEEYY WGVYYENSSD YEF

Best Arabidopsis Sequence Match ( AT4G05490.1 )
(BLAST)

001: MVTSSSSPPL ATSQLPVMKG EEKPSNWAEL PPDLLSSILL RLSPLEILEN ARKVCRSWRR VSKDPLIWRR IDMRNLRRLY CIYAMEACCR HVVDLSQGGL
101: LEFNIDQWRF QTTSLLNYMA ERSSNLRRLR VKGGQITSVG IFEAIVKLPL LEELELLYCS IEEEHFKTIG QACPNLKTLK LVGFWSHLNE SDNDALAIAD
201: TMPGLLHLQL ISNGLTNIGL NAILDGCPHL ECLDLRQCFN INLFGDLERQ CLERIKDFRC PNDVLDDYNY VIFSDNGSIE DEKGEEEENY SYGSDDTEYG
301: YRRSADF

Arabidopsis Description

FBL22Putative F-box/LRR-repeat protein 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.