Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G126200.1 | Wheat | nucleus | 72.1 | 57.73 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 44.21 | 38.58 |
| Bra000817.1-P | Field mustard | plastid | 27.47 | 35.56 |
| CDY21989 | Canola | cytosol | 12.02 | 34.57 |
| AT4G03630.1 | Thale cress | cytosol | 30.04 | 31.82 |
| PGSC0003DMT400058969 | Potato | cytosol | 12.02 | 31.46 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 46.35 | 30.86 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 43.78 | 30.09 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 38.2 | 28.62 |
| Solyc08g013780.1.1 | Tomato | cytosol | 14.59 | 27.64 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 35.19 | 26.62 |
| CDX99649 | Canola | cytosol | 26.18 | 26.18 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 24.89 | 26.13 |
| Bra034230.1-P | Field mustard | cytosol | 29.18 | 25.86 |
| CDX86473 | Canola | cytosol | 28.33 | 25.78 |
| CDY15937 | Canola | cytosol | 25.75 | 25.75 |
| Bra000723.1-P | Field mustard | cytosol | 16.74 | 25.66 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 33.48 | 25.49 |
| CDY48580 | Canola | cytosol | 33.48 | 25.41 |
| Bra030342.1-P | Field mustard | cytosol | 25.32 | 25.32 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 45.49 | 24.54 |
| CDY48574 | Canola | cytosol | 31.33 | 24.5 |
| AT4G05490.1 | Thale cress | plastid | 32.19 | 24.43 |
| CDX90789 | Canola | cytosol | 31.33 | 24.25 |
| CDX73787 | Canola | cytosol | 26.61 | 24.22 |
| Bra030690.1-P | Field mustard | cytosol | 29.18 | 24.2 |
| CDY15618 | Canola | cytosol | 29.18 | 24.2 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 33.91 | 24.09 |
| AT5G52480.1 | Thale cress | cytosol | 24.89 | 24.07 |
| CDY48578 | Canola | cytosol | 25.75 | 23.9 |
| AT4G05460.1 | Thale cress | cytosol | 30.9 | 23.84 |
| KRH21099 | Soybean | cytosol | 31.33 | 23.47 |
| Bra000816.1-P | Field mustard | plastid | 32.62 | 23.38 |
| CDY21986 | Canola | cytosol, plastid | 30.04 | 23.33 |
| Bra034228.1-P | Field mustard | cytosol | 29.61 | 23.23 |
| CDY48576 | Canola | cytosol | 29.61 | 23.23 |
| Bra034229.1-P | Field mustard | cytosol | 27.47 | 23.19 |
| CDY21333 | Canola | nucleus, plastid | 29.18 | 23.13 |
| CDY09910 | Canola | nucleus | 31.76 | 23.12 |
| Bra034227.1-P | Field mustard | plastid | 31.33 | 22.96 |
| Bra034226.1-P | Field mustard | cytosol | 28.33 | 22.92 |
| CDY62000 | Canola | plastid | 32.19 | 22.8 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 31.33 | 22.74 |
| AT4G05475.1 | Thale cress | cytosol | 30.04 | 22.65 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 30.04 | 22.65 |
| CDY59275 | Canola | plastid | 30.9 | 22.43 |
| CDY48575 | Canola | plastid | 30.47 | 22.4 |
| CDY21983 | Canola | cytosol | 27.04 | 22.26 |
| CDY06267 | Canola | nucleus | 33.05 | 22.13 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 24.46 | 22.01 |
| Bra031582.1-P | Field mustard | nucleus | 32.62 | 21.71 |
| KRH11147 | Soybean | cytosol | 29.61 | 21.7 |
| Zm00001d046526_P001 | Maize | plastid | 26.18 | 21.55 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 27.9 | 21.24 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 18.45 | 21.18 |
| PGSC0003DMT400052833 | Potato | cytosol | 24.89 | 21.09 |
| PGSC0003DMT400016134 | Potato | cytosol | 26.18 | 21.03 |
| CDY10283 | Canola | cytosol | 28.33 | 21.02 |
| CDY48577 | Canola | cytosol | 25.32 | 20.92 |
| PGSC0003DMT400090939 | Potato | cytosol | 26.18 | 20.13 |
| Solyc08g006940.2.1 | Tomato | cytosol | 26.61 | 19.94 |
| Solyc08g013800.2.1 | Tomato | cytosol | 24.89 | 19.73 |
| AT4G05497.1 | Thale cress | plastid | 20.6 | 19.51 |
| PGSC0003DMT400015030 | Potato | cytosol | 24.03 | 18.92 |
| CDY21988 | Canola | cytosol | 12.02 | 18.54 |
| PGSC0003DMT400015035 | Potato | cytosol | 24.03 | 18.3 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 25.75 | 17.6 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 22.32 | 17.16 |
| CDX77948 | Canola | cytosol | 12.45 | 17.16 |
| PGSC0003DMT400054358 | Potato | cytosol | 24.03 | 16.52 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 24.89 | 16.43 |
| Solyc08g013820.2.1 | Tomato | cytosol | 24.46 | 15.32 |
| Bra034194.1-P | Field mustard | cytosol | 33.91 | 14.77 |
| TraesCS6A01G051000.1 | Wheat | plastid | 21.89 | 13.71 |
| CDY09154 | Canola | plastid | 30.9 | 12.7 |
| Bra020205.1-P | Field mustard | plastid | 30.9 | 12.7 |
| CDY21990 | Canola | cytosol | 10.3 | 12.5 |
| CDY22112 | Canola | cytosol | 25.75 | 12.45 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 26.18 | 12.3 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 18.88 | 11.25 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 3.86 | 9.09 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 3.0 | 6.6 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G128000.1 | EnsemblPlantsGene:TraesCS1A01G128000 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44078 |
| PANTHER:PTHR44078:SF3 | SUPFAM:SSF52047 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr1A:+:155806645..155808250
Molecular Weight (calculated)
26793.6 Da
IEP (calculated)
8.313
GRAVY (calculated)
-0.200
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MATITNSELE PYARQRNLKC DRRSSKLPFI LCFNRYHHLA PLQSLDVLPG QYNGYGLLTS KLSVSRAPSL KSLRFISSKY ITNEGLLEAL NKFPVLEELE
101: LSLCKHVFGK VYEGISIACP RLKCLKVNYP CFYNIEDIEY NKDEEALGIA TMFVLPSLQL FGSELTNVGL ATILDNCPHL EYLDIRHCFN IHMDITLRAK
201: CARVKTMRLP HDSTDDYEFQ IENLVRTRAR KPR
101: LSLCKHVFGK VYEGISIACP RLKCLKVNYP CFYNIEDIEY NKDEEALGIA TMFVLPSLQL FGSELTNVGL ATILDNCPHL EYLDIRHCFN IHMDITLRAK
201: CARVKTMRLP HDSTDDYEFQ IENLVRTRAR KPR
001: MNNEDFNADE LLTFVAYRSS ILKRLGRMMC HAVALSQGGC VEINIEHFGT DSLLTYIADR SSNLRHLGLA KCDQITGMGL FTEAMKLPLL EDLELSYCLI
101: KGKNLEAIGF ACLHLKTLKL NCQGFKFPGF TYDHDALGIA KRMPELRCLQ LFGNRVSDVG LNAIFDGCPH LEHLDLRQCF NINLVGDLEK RCMERIKDLR
201: RPNDSTADYP YDTSLLDLGI
101: KGKNLEAIGF ACLHLKTLKL NCQGFKFPGF TYDHDALGIA KRMPELRCLQ LFGNRVSDVG LNAIFDGCPH LEHLDLRQCF NINLVGDLEK RCMERIKDLR
201: RPNDSTADYP YDTSLLDLGI
Arabidopsis Description
Putative nodulin [Source:UniProtKB/TrEMBL;Acc:Q9SY41]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.