Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15618 | Canola | cytosol | 95.7 | 87.19 |
| CDY21988 | Canola | cytosol | 30.08 | 50.99 |
| CDY09910 | Canola | nucleus | 61.33 | 49.06 |
| CDY48578 | Canola | cytosol | 46.09 | 47.01 |
| CDY21989 | Canola | cytosol | 14.84 | 46.91 |
| CDY48580 | Canola | cytosol | 55.86 | 46.58 |
| CDY48574 | Canola | cytosol | 53.12 | 45.64 |
| AT4G05460.1 | Thale cress | cytosol | 53.52 | 45.36 |
| CDX73787 | Canola | cytosol | 45.31 | 45.31 |
| CDX90789 | Canola | cytosol | 53.12 | 45.18 |
| CDY06267 | Canola | nucleus | 60.94 | 44.83 |
| CDY59275 | Canola | plastid | 55.86 | 44.55 |
| CDY48576 | Canola | cytosol | 51.17 | 44.11 |
| CDY21333 | Canola | nucleus, plastid | 50.39 | 43.88 |
| CDX99649 | Canola | cytosol | 39.84 | 43.78 |
| CDY48575 | Canola | plastid | 53.91 | 43.53 |
| CDY62000 | Canola | plastid | 55.47 | 43.16 |
| CDY15937 | Canola | cytosol | 39.06 | 42.92 |
| CDY10283 | Canola | cytosol | 51.56 | 42.04 |
| CDY21986 | Canola | cytosol, plastid | 49.22 | 42.0 |
| CDX77948 | Canola | cytosol | 26.95 | 40.83 |
| CDY48577 | Canola | cytosol | 44.14 | 40.07 |
| PGSC0003DMT400058969 | Potato | cytosol | 13.67 | 39.33 |
| KRH21099 | Soybean | cytosol | 45.7 | 37.62 |
| KRH11147 | Soybean | cytosol | 45.7 | 36.79 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 45.31 | 36.14 |
| PGSC0003DMT400052833 | Potato | cytosol | 37.89 | 35.27 |
| CDY21990 | Canola | cytosol | 25.78 | 34.38 |
| Solyc08g013780.1.1 | Tomato | cytosol | 16.41 | 34.15 |
| PGSC0003DMT400016134 | Potato | cytosol | 38.67 | 34.14 |
| Solyc08g013800.2.1 | Tomato | cytosol | 38.67 | 33.67 |
| PGSC0003DMT400015035 | Potato | cytosol | 39.84 | 33.33 |
| Solyc08g006940.2.1 | Tomato | cytosol | 40.23 | 33.12 |
| PGSC0003DMT400015030 | Potato | cytosol | 38.28 | 33.11 |
| PGSC0003DMT400090939 | Potato | cytosol | 38.67 | 32.67 |
| CDY21983 | Canola | cytosol | 35.16 | 31.8 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 32.42 | 31.09 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 30.47 | 30.23 |
| PGSC0003DMT400054358 | Potato | cytosol | 38.28 | 28.91 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 25.78 | 28.33 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 33.59 | 28.1 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 21.88 | 27.59 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 21.88 | 27.59 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 31.25 | 27.49 |
| Solyc08g013820.2.1 | Tomato | cytosol | 39.84 | 27.42 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 18.36 | 27.33 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 32.81 | 27.27 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 21.48 | 27.23 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 32.42 | 26.95 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 17.97 | 26.74 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 21.09 | 26.6 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 33.98 | 26.52 |
| Zm00001d024252_P001 | Maize | cytosol | 27.34 | 26.52 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 30.47 | 26.44 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 21.09 | 26.34 |
| Zm00001d010914_P001 | Maize | cytosol | 33.59 | 26.3 |
| EES14679 | Sorghum | nucleus | 35.16 | 26.16 |
| Os02t0317500-01 | Rice | cytosol | 33.59 | 26.06 |
| KXG24675 | Sorghum | cytosol | 29.3 | 26.04 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 32.03 | 25.95 |
| Os08t0194350-00 | Rice | cytosol | 26.95 | 25.94 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 32.81 | 25.93 |
| EES17669 | Sorghum | cytosol | 33.59 | 25.9 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 31.25 | 25.81 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 34.77 | 25.8 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 10.55 | 25.71 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 32.81 | 25.61 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 32.81 | 25.45 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 34.38 | 25.43 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 34.38 | 25.43 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 30.08 | 25.16 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 29.3 | 24.92 |
| CDY09154 | Canola | plastid | 55.08 | 24.87 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 29.69 | 24.84 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 31.25 | 24.77 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 28.12 | 24.74 |
| Os02t0317300-01 | Rice | cytosol | 31.64 | 24.7 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 31.25 | 24.69 |
| Zm00001d024265_P001 | Maize | cytosol | 28.91 | 24.67 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 32.81 | 24.63 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 33.59 | 24.57 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 30.86 | 24.38 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 30.47 | 24.38 |
| KXG24670 | Sorghum | cytosol | 30.08 | 24.29 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 33.2 | 24.29 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 9.38 | 24.24 |
| OQU80176 | Sorghum | mitochondrion | 21.09 | 24.22 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 15.62 | 24.1 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 19.53 | 24.04 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 32.42 | 23.99 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 31.64 | 23.89 |
| TraesCS6B01G067700.1 | Wheat | plastid | 25.0 | 23.88 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 28.12 | 23.84 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 32.42 | 23.71 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 28.52 | 23.62 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 28.52 | 23.47 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 28.52 | 23.32 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 28.52 | 23.32 |
| Zm00001d024764_P001 | Maize | cytosol | 32.42 | 23.25 |
| TraesCS2B01G178700.1 | Wheat | plastid | 27.73 | 22.98 |
| OQU80048 | Sorghum | cytosol | 25.39 | 22.81 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 30.08 | 22.71 |
| TraesCS2D01G159000.1 | Wheat | plastid | 27.34 | 22.65 |
| TraesCS7D01G203500.1 | Wheat | plastid | 30.08 | 22.65 |
| Zm00001d046526_P001 | Maize | plastid | 25.0 | 22.61 |
| CDY22112 | Canola | cytosol | 42.58 | 22.61 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 19.53 | 22.32 |
| TraesCS7D01G203600.1 | Wheat | plastid | 29.69 | 22.29 |
| Os08t0193900-01 | Rice | nucleus | 34.38 | 22.22 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 10.16 | 22.03 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 19.14 | 21.88 |
| Os08t0193500-00 | Rice | cytosol | 18.36 | 21.46 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 18.36 | 21.17 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 17.58 | 21.13 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 26.17 | 21.07 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 23.05 | 21.0 |
| Os11t0637300-00 | Rice | cytosol | 9.77 | 20.83 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 27.34 | 20.53 |
| Os08t0193200-00 | Rice | cytosol | 8.98 | 20.0 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 25.0 | 19.94 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 26.95 | 19.83 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 26.56 | 19.71 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 25.39 | 19.7 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 14.84 | 19.69 |
| Os08t0191300-00 | Rice | cytosol, golgi | 19.53 | 19.46 |
| OQU80174 | Sorghum | cytosol | 10.16 | 19.4 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 18.36 | 19.34 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 26.56 | 19.26 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 26.56 | 19.21 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 26.17 | 19.14 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 22.66 | 19.14 |
| TraesCS6B01G310200.1 | Wheat | plastid | 26.95 | 19.11 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 25.0 | 19.1 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 32.03 | 18.98 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 25.39 | 18.9 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 25.39 | 18.9 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 7.81 | 18.87 |
| HORVU2Hr1G077990.2 | Barley | plastid | 27.34 | 18.72 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 33.59 | 18.3 |
| TraesCS6A01G051000.1 | Wheat | plastid | 26.56 | 18.28 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 19.14 | 18.15 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 17.19 | 17.6 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 26.95 | 17.42 |
| Os08t0193300-00 | Rice | cytosol | 22.66 | 17.42 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 9.38 | 16.9 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 28.91 | 16.63 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 30.47 | 16.46 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 28.12 | 16.44 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 29.69 | 16.07 |
| TraesCS3B01G452300.1 | Wheat | plastid | 28.91 | 15.91 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 28.91 | 15.81 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 18.36 | 15.72 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 29.69 | 15.32 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 17.58 | 14.9 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 22.66 | 14.83 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 20.31 | 14.02 |
| Os08t0196200-01 | Rice | cytosol | 10.55 | 9.85 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.39 | 0.26 |
Protein Annotations
| EnsemblPlants:CDX86473 | EnsemblPlantsGene:GSBRNA2T00145064001 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44078 |
| PANTHER:PTHR44078:SF5 | PFAM:PF12937 | PFscan:PS50181 | ProteinID:CDX86473 | ProteinID:CDX86473.1 | SEG:seg |
| SMART:SM00256 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0004EDB3FD | MapMan:35.1 | : |
Description
BnaC08g02300D
Coordinates
chrLK031846:-:10913..12246
Molecular Weight (calculated)
28699.1 Da
IEP (calculated)
4.406
GRAVY (calculated)
-0.371
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQGEEYPNW LELPPELTSS ILNRLGVIEK LESAQKVCRS WRRICKDPLT WSKIDMRNVG HMGGSSHELE KICRHAVDRS QGGSSKLRNL KLAMCYLIEN
101: EGLIEVIAKL PLLEVLEVSY CSLSGEPLES IVPSSCPNQM TLGNNCDDVA LAIAESMPGL TRLQLFGNRL TNFGLNAILD RCPNLEYLDL RQCINADIVG
201: DMERRCYERI KVLRRPNDPV DDDPSGVSDV DEMSEEYYGN YSAASDYSDT GEDLGF
101: EGLIEVIAKL PLLEVLEVSY CSLSGEPLES IVPSSCPNQM TLGNNCDDVA LAIAESMPGL TRLQLFGNRL TNFGLNAILD RCPNLEYLDL RQCINADIVG
201: DMERRCYERI KVLRRPNDPV DDDPSGVSDV DEMSEEYYGN YSAASDYSDT GEDLGF
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.