Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0935300-02 | |
| Os05t0193900-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | Os01t0935300-02 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | Os05t0193900-00 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0193200-00 | Rice | cytosol | 12.77 | 30.43 |
| Os11t0637300-00 | Rice | cytosol | 12.04 | 27.5 |
| CDY21988 | Canola | cytosol | 10.95 | 19.87 |
| CDX77948 | Canola | cytosol | 9.85 | 15.98 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 16.79 | 15.23 |
| CDY21990 | Canola | cytosol | 10.22 | 14.58 |
| Os08t0193500-00 | Rice | cytosol | 11.31 | 14.16 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 16.42 | 13.2 |
| Os08t0193900-01 | Rice | nucleus | 18.25 | 12.63 |
| CDX99649 | Canola | cytosol | 10.58 | 12.45 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 15.69 | 12.43 |
| Os08t0194350-00 | Rice | cytosol | 12.04 | 12.41 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 11.31 | 12.4 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 14.6 | 12.38 |
| CDY48578 | Canola | cytosol | 11.31 | 12.35 |
| Bra030342.1-P | Field mustard | cytosol | 10.22 | 12.02 |
| CDY15937 | Canola | cytosol | 10.22 | 12.02 |
| Os02t0317300-01 | Rice | cytosol | 14.23 | 11.89 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 10.95 | 11.58 |
| AT4G05497.1 | Thale cress | plastid | 10.22 | 11.38 |
| Bra034227.1-P | Field mustard | plastid | 13.14 | 11.32 |
| Bra034230.1-P | Field mustard | cytosol | 10.58 | 11.03 |
| AT4G05460.1 | Thale cress | cytosol | 12.04 | 10.93 |
| CDY48575 | Canola | plastid | 12.41 | 10.73 |
| CDX86473 | Canola | cytosol | 9.85 | 10.55 |
| CDX73787 | Canola | cytosol | 9.49 | 10.16 |
| Bra034229.1-P | Field mustard | cytosol | 10.22 | 10.14 |
| Os02t0317500-01 | Rice | cytosol | 12.04 | 10.0 |
| CDX90789 | Canola | cytosol | 10.95 | 9.97 |
| CDY48580 | Canola | cytosol | 10.95 | 9.77 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 11.31 | 9.66 |
| Bra030690.1-P | Field mustard | cytosol | 9.85 | 9.61 |
| CDY15618 | Canola | cytosol | 9.85 | 9.61 |
| AT4G05490.1 | Thale cress | plastid | 10.58 | 9.45 |
| CDY48574 | Canola | cytosol | 10.22 | 9.4 |
| Bra034226.1-P | Field mustard | cytosol | 9.85 | 9.38 |
| PGSC0003DMT400016134 | Potato | cytosol | 9.85 | 9.31 |
| CDY10283 | Canola | cytosol | 10.58 | 9.24 |
| CDY48577 | Canola | cytosol | 9.49 | 9.22 |
| CDY48576 | Canola | cytosol | 9.85 | 9.09 |
| CDY59275 | Canola | plastid | 10.58 | 9.03 |
| CDY21333 | Canola | nucleus, plastid | 9.49 | 8.84 |
| CDY09910 | Canola | nucleus | 10.22 | 8.75 |
| CDY21986 | Canola | cytosol, plastid | 9.49 | 8.67 |
| CDY62000 | Canola | plastid | 10.22 | 8.51 |
| Bra034228.1-P | Field mustard | cytosol | 9.12 | 8.42 |
| Bra000816.1-P | Field mustard | plastid | 9.85 | 8.31 |
| CDY06267 | Canola | nucleus | 10.22 | 8.05 |
| PGSC0003DMT400090939 | Potato | cytosol | 8.76 | 7.92 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 8.76 | 7.84 |
| KRH21099 | Soybean | cytosol | 8.76 | 7.72 |
| Solyc08g006940.2.1 | Tomato | cytosol | 8.76 | 7.72 |
| Bra031582.1-P | Field mustard | nucleus | 9.85 | 7.71 |
| PGSC0003DMT400052833 | Potato | cytosol | 7.66 | 7.64 |
| KRH11147 | Soybean | cytosol | 8.76 | 7.55 |
| Solyc08g013800.2.1 | Tomato | cytosol | 8.03 | 7.48 |
| AT4G05475.1 | Thale cress | cytosol | 8.39 | 7.44 |
| PGSC0003DMT400015035 | Potato | cytosol | 8.03 | 7.19 |
| PGSC0003DMT400054358 | Potato | cytosol | 8.39 | 6.78 |
| PGSC0003DMT400015030 | Potato | cytosol | 6.57 | 6.08 |
| Solyc08g013820.2.1 | Tomato | cytosol | 7.66 | 5.65 |
| CDY22112 | Canola | cytosol | 9.85 | 5.6 |
| Bra020205.1-P | Field mustard | plastid | 10.58 | 5.11 |
| CDY09154 | Canola | plastid | 10.58 | 5.11 |
| Bra034194.1-P | Field mustard | cytosol | 9.85 | 5.05 |
| OQU80048 | Sorghum | cytosol | 5.11 | 4.91 |
| Bra000723.1-P | Field mustard | cytosol | 2.55 | 4.61 |
| AT4G03630.1 | Thale cress | cytosol | 3.65 | 4.55 |
| Os08t0193300-00 | Rice | cytosol | 5.47 | 4.5 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 2.92 | 2.64 |
| Bra000817.1-P | Field mustard | plastid | 1.09 | 1.67 |
| AT5G52480.1 | Thale cress | cytosol | 1.46 | 1.66 |
| Os08t0191300-00 | Rice | cytosol, golgi | 1.46 | 1.56 |
| PGSC0003DMT400058969 | Potato | cytosol | 0.0 | 0.0 |
| Solyc08g013780.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.0 | 0.0 |
| CDY21989 | Canola | cytosol | 0.0 | 0.0 |
| CDY21983 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A0P0XDL1 | ProteinID:BAT04215.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001611 | InterPro:IPR001810 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | EnsemblPlantsGene:Os08g0196200 | EnsemblPlants:Os08t0196200-01 | PFAM:PF12937 |
| PFAM:PF13516 | PFscan:PS50181 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF2 | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| UniParc:UPI000393A31E | SEG:seg | : | : | : | : |
Description
Hypothetical conserved gene. (Os08t0196200-01)
Coordinates
chr8:-:5584231..5587025
Molecular Weight (calculated)
30404.7 Da
IEP (calculated)
4.641
GRAVY (calculated)
-0.323
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: AARNWAELPP AAISAVLGGL DHVDILTGAG QVCRSWRRAA RDDPGLWRRV DMRGHANADA KRGVNLHGMA QAAVKRSAGR CEAFWGESAG SDRFLLFLGR
101: AAPDVFRTVG KSCPQLKRFR LSQHGFHSFE DSHDDDEALG IATMTQLRSL QIFGNTITNE GLEAILDNCP HLESLDIRHC FNVFMDDTLR AKCARIKALR
201: LPDDSIDDYD LQVFSPVFAD SGNSSDDMDD GYMVPGLHCV VFSEENECFD DDINEDELDD EARMMLNGLR ALLM
101: AAPDVFRTVG KSCPQLKRFR LSQHGFHSFE DSHDDDEALG IATMTQLRSL QIFGNTITNE GLEAILDNCP HLESLDIRHC FNVFMDDTLR AKCARIKALR
201: LPDDSIDDYD LQVFSPVFAD SGNSSDDMDD GYMVPGLHCV VFSEENECFD DDINEDELDD EARMMLNGLR ALLM
001: MVTSSSSPPL ATSQLPVMKG EEKPSNWAEL PPDLLSSILL RLSPLEILEN ARKVCRSWRR VSKDPLIWRR IDMRNLRRLY CIYAMEACCR HVVDLSQGGL
101: LEFNIDQWRF QTTSLLNYMA ERSSNLRRLR VKGGQITSVG IFEAIVKLPL LEELELLYCS IEEEHFKTIG QACPNLKTLK LVGFWSHLNE SDNDALAIAD
201: TMPGLLHLQL ISNGLTNIGL NAILDGCPHL ECLDLRQCFN INLFGDLERQ CLERIKDFRC PNDVLDDYNY VIFSDNGSIE DEKGEEEENY SYGSDDTEYG
301: YRRSADF
101: LEFNIDQWRF QTTSLLNYMA ERSSNLRRLR VKGGQITSVG IFEAIVKLPL LEELELLYCS IEEEHFKTIG QACPNLKTLK LVGFWSHLNE SDNDALAIAD
201: TMPGLLHLQL ISNGLTNIGL NAILDGCPHL ECLDLRQCFN INLFGDLERQ CLERIKDFRC PNDVLDDYNY VIFSDNGSIE DEKGEEEENY SYGSDDTEYG
301: YRRSADF
Arabidopsis Description
FBL22Putative F-box/LRR-repeat protein 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.