Factsheet for Os02t0317300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0935300-02
Os05t0193900-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	Os01t0935300-02	AT4G02570.1	12795696
AT4G05460.1	Os05t0193900-00	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010914_P001	Maize	cytosol	73.17	73.39
TraesCS2A01G071400.1	Wheat	cytosol	23.48	72.64
EES17669	Sorghum	cytosol	73.48	72.59
HORVU1Hr1G004970.3	Barley	cytosol	68.6	69.44
TraesCS2B01G085400.1	Wheat	cytosol	62.5	64.06
TraesCS2D01G070200.1	Wheat	cytosol	62.8	63.58
TraesCS2B01G085200.1	Wheat	cytosol	62.8	63.58
Zm00001d024764_P001	Maize	cytosol	56.71	52.1
Os08t0193200-00	Rice	cytosol	15.24	43.48
Os02t0317500-01	Rice	cytosol	41.46	41.21
Os11t0637300-00	Rice	cytosol	14.94	40.83
PGSC0003DMT400058969	Potato	cytosol	10.98	40.45
CDY21989	Canola	cytosol	9.45	38.27
Solyc08g013780.1.1	Tomato	cytosol	14.33	38.21
Os08t0195800-00	Rice	cytosol, mitochondrion, nucleus	39.63	37.57
CDX99649	Canola	cytosol	26.22	36.91
Os08t0194350-00	Rice	cytosol	29.27	36.09
CDY15937	Canola	cytosol	25.3	35.62
Bra000817.1-P	Field mustard	plastid	19.51	35.56
CDX73787	Canola	cytosol	27.74	35.55
Bra030342.1-P	Field mustard	cytosol	25.0	35.19
Bra034229.1-P	Field mustard	cytosol	29.57	35.14
Bra034226.1-P	Field mustard	cytosol	30.79	35.07
KRH21099	Soybean	cytosol	33.23	35.05
Bra034230.1-P	Field mustard	cytosol	28.05	34.98
VIT_10s0003g04300.t01	Wine grape	cytosol	34.15	34.89
PGSC0003DMT400052833	Potato	cytosol	28.96	34.55
CDY48580	Canola	cytosol	32.32	34.53
PGSC0003DMT400016134	Potato	cytosol	30.49	34.48
AT5G52480.1	Thale cress	cytosol	25.3	34.44
CDY48578	Canola	cytosol	26.22	34.26
CDY48574	Canola	cytosol	31.1	34.23
CDX90789	Canola	cytosol	31.4	34.22
Bra034227.1-P	Field mustard	plastid	32.93	33.96
CDY21988	Canola	cytosol	15.55	33.77
KRH11147	Soybean	cytosol	32.62	33.65
CDY59275	Canola	plastid	32.93	33.64
Bra034231.1-P	Field mustard	cytosol, plastid	26.52	33.59
AT4G05460.1	Thale cress	cytosol	30.49	33.11
CDY21333	Canola	nucleus, plastid	29.57	32.99
AT4G05497.1	Thale cress	plastid	24.7	32.93
CDY48575	Canola	plastid	31.71	32.81
AT4G03630.1	Thale cress	cytosol	21.95	32.73
CDY48576	Canola	cytosol	29.57	32.66
Os08t0193500-00	Rice	cytosol	21.65	32.42
Os08t0193900-01	Rice	nucleus	39.02	32.32
Bra000723.1-P	Field mustard	cytosol	14.94	32.24
PGSC0003DMT400015035	Potato	cytosol	29.88	32.03
CDY48577	Canola	cytosol	27.44	31.91
Solyc08g006940.2.1	Tomato	cytosol	30.18	31.83
Bra034228.1-P	Field mustard	cytosol	28.66	31.65
CDX86473	Canola	cytosol	24.7	31.64
AT4G05490.1	Thale cress	plastid	29.57	31.6
Solyc08g013800.2.1	Tomato	cytosol	28.05	31.29
PGSC0003DMT400090939	Potato	cytosol	28.66	31.02
CDY62000	Canola	plastid	31.1	31.0
CDY21986	Canola	cytosol, plastid	28.35	31.0
CDY15618	Canola	cytosol	26.52	30.96
Bra030690.1-P	Field mustard	cytosol	26.52	30.96
CDX77948	Canola	cytosol	15.85	30.77
AT4G05475.1	Thale cress	cytosol	28.35	30.1
AT4G05470.1	Thale cress	cytosol, plastid	28.05	30.07
Bra000816.1-P	Field mustard	plastid	29.57	29.85
PGSC0003DMT400054358	Potato	cytosol	30.79	29.79
PGSC0003DMT400015030	Potato	cytosol	26.52	29.39
CDY09910	Canola	nucleus	28.66	29.38
CDY10283	Canola	cytosol	27.13	28.34
CDY06267	Canola	nucleus	29.57	27.87
Bra031582.1-P	Field mustard	nucleus	29.27	27.43
CDY21990	Canola	cytosol	15.85	27.08
Solyc08g013820.2.1	Tomato	cytosol	29.57	26.08
Os08t0195900-00	Rice	cytosol, mitochondrion, nucleus, plastid	23.48	25.5
Os08t0195000-00	Rice	cytosol, peroxisome, plastid	18.6	24.4
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	22.26	24.09
Os08t0193300-00	Rice	cytosol	24.39	24.02
CDY21983	Canola	cytosol	18.9	21.91
Os08t0191300-00	Rice	cytosol, golgi	17.07	21.79
CDY09154	Canola	plastid	32.32	18.69
Bra020205.1-P	Field mustard	plastid	32.32	18.69
Bra034194.1-P	Field mustard	cytosol	29.57	18.13
CDY22112	Canola	cytosol	25.91	17.63
Os08t0196200-01	Rice	cytosol	11.89	14.23
Os08t0194000-00	Rice	cytosol, vacuole	1.83	1.59

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:4329151	EMBL:AK071724	ProteinID:BAD15715.1
ProteinID:BAF08585.1	ProteinID:BAS78348.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	EnsemblPlantsGene:Os02g0317300	EnsemblPlants:Os02t0317300-01	PFAM:PF12937	PFAM:PF13516	PFscan:PS50181
PANTHER:PTHR44078	PANTHER:PTHR44078:SF4	UniProt:Q6Z846	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0000358B44	RefSeq:XP_015627753.1	SEG:seg	:	:	:

Description

F-box protein 86Cyclin-like F-box domain containing protein. (Os02t0317300-01)

Coordinates

chr2:-:12600520..12604151

Molecular Weight (calculated)

36322.7 Da

IEP (calculated)

3.929

GRAVY (calculated)

-0.212

Length

328 amino acids

Sequence
(BLAST)

001: MSSPPPPPPT EMAEGEVESR DWAEMPSDAL AAVFGKLDVT DLLVGAGVVC RAWRRLAAID PTLWRRVDMS HQGDIMEVDE AVAMARAAVD RAAGTMEAFW
101: ADSFVTDGLL LYISERASSL KSLQLSMCLN VSNEGMAEAM KGFPRLEELD ITFCSLYGDV CASVGKACPE LKCFRLNERY TLQMDYAAPD IMDDDTEALG
201: IASNMPKLRE LQLIGNKLTN DGLMSILDHC QHLESLDIRQ CYSIQMDDAL KSKCSRISDL KLPHDSISDF KYRAYIFSSS AFSGSDLELD MYDDLLDVVT
301: DDDDADFDDM DDYDDGGSDG GMYDEFDI

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.