Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0935300-02 | |
| Os05t0193900-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | Os01t0935300-02 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | Os05t0193900-00 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G081700.1 | Wheat | cytosol | 37.27 | 74.1 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 63.03 | 67.97 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 62.73 | 67.65 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 63.03 | 61.36 |
| Os08t0193200-00 | Rice | cytosol | 16.06 | 46.09 |
| Os11t0637300-00 | Rice | cytosol | 16.36 | 45.0 |
| Os02t0317300-01 | Rice | cytosol | 41.21 | 41.46 |
| Os08t0194350-00 | Rice | cytosol | 31.21 | 38.72 |
| Bra000817.1-P | Field mustard | plastid | 20.91 | 38.33 |
| PGSC0003DMT400058969 | Potato | cytosol | 10.3 | 38.2 |
| AT4G03630.1 | Thale cress | cytosol | 24.85 | 37.27 |
| CDY21989 | Canola | cytosol | 9.09 | 37.04 |
| Os08t0193500-00 | Rice | cytosol | 24.55 | 36.99 |
| CDX99649 | Canola | cytosol | 25.45 | 36.05 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 37.58 | 35.84 |
| CDY15937 | Canola | cytosol | 24.85 | 35.19 |
| CDY48578 | Canola | cytosol | 26.67 | 35.06 |
| AT4G05460.1 | Thale cress | cytosol | 31.82 | 34.77 |
| Bra034230.1-P | Field mustard | cytosol | 27.58 | 34.6 |
| CDY48580 | Canola | cytosol | 32.12 | 34.53 |
| Bra030342.1-P | Field mustard | cytosol | 24.24 | 34.33 |
| Bra034226.1-P | Field mustard | cytosol | 29.7 | 34.03 |
| Bra030690.1-P | Field mustard | cytosol | 28.79 | 33.81 |
| CDY15618 | Canola | cytosol | 28.79 | 33.81 |
| CDY21333 | Canola | nucleus, plastid | 30.0 | 33.67 |
| Bra034227.1-P | Field mustard | plastid | 32.42 | 33.65 |
| CDX86473 | Canola | cytosol | 26.06 | 33.59 |
| Solyc08g013780.1.1 | Tomato | cytosol | 12.42 | 33.33 |
| AT4G05497.1 | Thale cress | plastid | 24.85 | 33.33 |
| AT5G52480.1 | Thale cress | cytosol | 24.24 | 33.2 |
| CDY21988 | Canola | cytosol | 15.15 | 33.11 |
| Bra034229.1-P | Field mustard | cytosol | 27.58 | 32.97 |
| CDX73787 | Canola | cytosol | 25.45 | 32.81 |
| CDY48575 | Canola | plastid | 31.52 | 32.81 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 31.82 | 32.71 |
| AT4G05490.1 | Thale cress | plastid | 30.3 | 32.57 |
| CDX90789 | Canola | cytosol | 29.7 | 32.56 |
| CDY09910 | Canola | nucleus | 31.52 | 32.5 |
| KRH21099 | Soybean | cytosol | 30.61 | 32.48 |
| PGSC0003DMT400016134 | Potato | cytosol | 28.48 | 32.41 |
| KRH11147 | Soybean | cytosol | 31.21 | 32.39 |
| CDY48574 | Canola | cytosol | 29.09 | 32.21 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 25.15 | 32.05 |
| Solyc08g013800.2.1 | Tomato | cytosol | 28.18 | 31.63 |
| Bra000816.1-P | Field mustard | plastid | 30.91 | 31.38 |
| CDX77948 | Canola | cytosol | 16.06 | 31.36 |
| Bra034228.1-P | Field mustard | cytosol | 28.18 | 31.31 |
| Os08t0193900-01 | Rice | nucleus | 37.58 | 31.31 |
| CDY48576 | Canola | cytosol | 28.18 | 31.31 |
| CDY62000 | Canola | plastid | 30.91 | 31.0 |
| CDY10283 | Canola | cytosol | 29.09 | 30.57 |
| CDY48577 | Canola | cytosol | 26.06 | 30.5 |
| PGSC0003DMT400015035 | Potato | cytosol | 28.18 | 30.39 |
| PGSC0003DMT400052833 | Potato | cytosol | 25.15 | 30.18 |
| CDY21986 | Canola | cytosol, plastid | 27.27 | 30.0 |
| CDY06267 | Canola | nucleus | 31.52 | 29.89 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 27.58 | 29.74 |
| PGSC0003DMT400015030 | Potato | cytosol | 26.67 | 29.73 |
| Bra000723.1-P | Field mustard | cytosol | 13.64 | 29.61 |
| CDY59275 | Canola | plastid | 28.79 | 29.59 |
| AT4G05475.1 | Thale cress | cytosol | 27.58 | 29.45 |
| Bra031582.1-P | Field mustard | nucleus | 31.21 | 29.43 |
| PGSC0003DMT400090939 | Potato | cytosol | 26.36 | 28.71 |
| Solyc08g006940.2.1 | Tomato | cytosol | 26.97 | 28.62 |
| PGSC0003DMT400054358 | Potato | cytosol | 26.97 | 26.25 |
| Os08t0193300-00 | Rice | cytosol | 25.76 | 25.53 |
| CDY21990 | Canola | cytosol | 14.55 | 25.0 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 22.73 | 24.83 |
| Solyc08g013820.2.1 | Tomato | cytosol | 27.88 | 24.73 |
| Os08t0191300-00 | Rice | cytosol, golgi | 17.88 | 22.96 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 17.27 | 22.8 |
| CDY21983 | Canola | cytosol | 19.39 | 22.61 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 18.18 | 19.8 |
| Bra034194.1-P | Field mustard | cytosol | 30.3 | 18.69 |
| CDY09154 | Canola | plastid | 29.39 | 17.11 |
| Bra020205.1-P | Field mustard | plastid | 29.39 | 17.11 |
| CDY22112 | Canola | cytosol | 24.85 | 17.01 |
| Os08t0196200-01 | Rice | cytosol | 10.0 | 12.04 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 1.82 | 1.59 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:4329153 | EMBL:AK102355 | ProteinID:BAD15718.1 |
| ProteinID:BAD27646.1 | ProteinID:BAF08587.1 | ProteinID:BAS78352.1 | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | EnsemblPlantsGene:Os02g0317500 | EnsemblPlants:Os02t0317500-01 |
| PFAM:PF12937 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF3 | UniProt:Q6Z843 | SUPFAM:SSF52047 | UniParc:UPI0000358B47 |
| RefSeq:XP_015623480.1 | SEG:seg | : | : | : | : |
Description
F-box protein 87Cyclin-like F-box domain containing protein. (Os02t0317500-01)
Coordinates
chr2:-:12614034..12618437
Molecular Weight (calculated)
37294.2 Da
IEP (calculated)
4.713
GRAVY (calculated)
-0.325
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPPPPPPE WADLPVDAVL AVFERLGAAE VLMGAGVVCR SWLRAATREP RLWRRVDLTA CFDPTVDMEA MARAAVDRAG GRLEHFAAER FVTDELLLYV
101: AKRTSCLKSL RLRDCIKISE KGLVAVGKTS PCLEELELTT CTISILLKAV GEAFPNLKCL RLNHRWFDVQ FDEFRDNFHA LGIACSMHRL RHLQIFANRL
201: RNNALAAILD NCPHLESLDL RQCFNVDVDA EVRAKCARLK DVRFPNDSTK DYEYETFIET PSLDSLPLPF PAAVPQWPFH GNDEDDDNDG DQDDDDDGDQ
301: DDDDLGGHRV TEYGFIIGDY HVRGRIIHHE
101: AKRTSCLKSL RLRDCIKISE KGLVAVGKTS PCLEELELTT CTISILLKAV GEAFPNLKCL RLNHRWFDVQ FDEFRDNFHA LGIACSMHRL RHLQIFANRL
201: RNNALAAILD NCPHLESLDL RQCFNVDVDA EVRAKCARLK DVRFPNDSTK DYEYETFIET PSLDSLPLPF PAAVPQWPFH GNDEDDDNDG DQDDDDDGDQ
301: DDDDLGGHRV TEYGFIIGDY HVRGRIIHHE
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.