CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000816.1-P	Field mustard	plastid	72.95	73.85
CDY21333	Canola	nucleus, plastid	58.36	65.31
CDY21988	Canola	cytosol	29.48	64.24
CDY59275	Canola	plastid	62.61	64.17
CDY48580	Canola	cytosol	58.66	62.87
CDY48578	Canola	cytosol	47.42	62.15
CDY48574	Canola	cytosol	54.41	60.07
CDY09910	Canola	nucleus	57.45	59.06
CDY48576	Canola	cytosol	53.19	58.92
CDY48577	Canola	cytosol	48.63	56.74
CDY21986	Canola	cytosol, plastid	51.67	56.67
CDY15618	Canola	cytosol	48.33	56.58
CDX90789	Canola	cytosol	51.37	56.15
CDX86473	Canola	cytosol	43.16	55.47
CDY10283	Canola	cytosol	52.89	55.41
CDX77948	Canola	cytosol	28.27	55.03
CDX73787	Canola	cytosol	42.55	54.69
CDY48575	Canola	plastid	52.28	54.26
CDY06267	Canola	nucleus	56.23	53.16
CDY21990	Canola	cytosol	30.7	52.6
CDX99649	Canola	cytosol	37.08	52.36
CDY21989	Canola	cytosol	12.77	51.85
CDY15937	Canola	cytosol	36.47	51.5
VIT_10s0003g04300.t01	Wine grape	cytosol	44.38	45.48
KRH21099	Soybean	cytosol	42.55	45.02
KRH11147	Soybean	cytosol	40.43	41.82
Solyc08g013800.2.1	Tomato	cytosol	37.08	41.5
PGSC0003DMT400058969	Potato	cytosol	10.94	40.45
PGSC0003DMT400052833	Potato	cytosol	33.74	40.36
PGSC0003DMT400016134	Potato	cytosol	35.56	40.34
PGSC0003DMT400015035	Potato	cytosol	37.39	40.2
Solyc08g006940.2.1	Tomato	cytosol	37.99	40.19
PGSC0003DMT400015030	Potato	cytosol	35.56	39.53
TraesCS7A01G304900.1	Wheat	mitochondrion, nucleus	31.61	38.95
CDY21983	Canola	cytosol	33.13	38.52
PGSC0003DMT400090939	Potato	cytosol	35.26	38.28
TraesCS5B01G081700.1	Wheat	cytosol	18.84	37.35
TraesCS3B01G443100.1	Wheat	cytosol	28.88	36.82
TraesCS7A01G484100.1	Wheat	cytosol	10.94	36.36
CDY09154	Canola	plastid	62.31	36.16
Solyc08g013780.1.1	Tomato	cytosol	13.37	35.77
TraesCS5D01G484300.1	Wheat	cytosol	21.88	35.47
PGSC0003DMT400054358	Potato	cytosol	36.47	35.4
TraesCS5B01G466500.1	Wheat	extracellular	11.25	35.24
TraesCS5D01G100900.1	Wheat	endoplasmic reticulum	18.24	34.88
Zm00001d024252_P001	Maize	cytosol	27.96	34.85
TraesCS5D01G468200.1	Wheat	cytosol, plasma membrane, plastid	21.28	34.65
TraesCS5A01G471800.1	Wheat	cytosol	21.28	34.48
TraesCS5B01G484300.1	Wheat	cytosol	21.28	34.48
TraesCS5B01G094800.1	Wheat	endoplasmic reticulum	17.93	34.3
CDY22112	Canola	cytosol	50.15	34.23
TraesCS1D01G126200.1	Wheat	nucleus	29.79	33.68
TraesCS5D01G088900.1	Wheat	cytosol	31.31	33.66
TraesCS3B01G443800.1	Wheat	nucleus	35.26	33.62
Solyc08g013820.2.1	Tomato	cytosol	37.69	33.33
TraesCS7B01G205200.1	Wheat	mitochondrion	34.95	33.24
TraesCS7D01G300400.1	Wheat	mitochondrion, nucleus	34.95	33.24
TraesCS5B01G484500.1	Wheat	cytosol	20.67	33.17
TraesCS5A01G075400.1	Wheat	cytosol	30.7	33.01
EES14679	Sorghum	nucleus	34.35	32.85
Os08t0194350-00	Rice	cytosol	26.44	32.71
KXG24675	Sorghum	cytosol	28.57	32.64
TraesCS1A01G128000.1	Wheat	cytosol	22.8	32.19
Os08t0193200-00	Rice	cytosol	11.25	32.17
Zm00001d010914_P001	Maize	cytosol	31.91	32.11
TraesCS4B01G183800.1	Wheat	cytosol	29.79	32.03
EES17669	Sorghum	cytosol	32.22	31.93
TraesCS4B01G183700.1	Wheat	cytosol	28.57	31.86
TraesCS1D01G034100.1	Wheat	cytosol	31.61	31.71
Os11t0637300-00	Rice	cytosol	11.55	31.67
TraesCS2A01G313400.1	Wheat	cytosol	29.79	31.51
TraesCS3A01G410700.1	Wheat	mitochondrion	33.43	31.43
HORVU2Hr1G027710.1	Barley	cytosol	27.66	31.27
TraesCS5B01G484600.1	Wheat	cytosol	19.76	31.25
TraesCS3B01G444000.1	Wheat	nucleus	33.13	31.14
Os02t0317300-01	Rice	cytosol	31.0	31.1
TraesCS1A01G033100.1	Wheat	cytosol	31.0	31.1
TraesCS2B01G332200.1	Wheat	cytosol	29.48	30.99
HORVU0Hr1G019800.1	Barley	cytosol	29.18	30.97
Os02t0317500-01	Rice	cytosol	31.0	30.91
TraesCS1B01G041200.1	Wheat	cytosol	31.0	30.91
HORVU1Hr1G004970.3	Barley	cytosol	30.4	30.86
TraesCS3D01G405300.1	Wheat	nucleus	32.83	30.86
TraesCS7A01G193100.1	Wheat	cytosol	28.88	30.84
TraesCS7B01G098400.1	Wheat	cytosol	28.88	30.84
HORVU5Hr1G020150.1	Barley	mitochondrion	31.61	30.68
TraesCS3A01G411000.1	Wheat	nucleus	31.61	30.68
TraesCS2D01G311900.1	Wheat	cytosol	28.88	30.35
KXG24670	Sorghum	cytosol	29.18	30.28
Os08t0193500-00	Rice	cytosol	20.06	30.14
HORVU2Hr1G027770.2	Barley	mitochondrion	27.66	30.13
TraesCS2A01G153600.1	Wheat	cytosol, plastid	28.27	30.1
TraesCS7D01G194400.1	Wheat	extracellular	28.88	30.06
TraesCS5B01G484100.1	Wheat	cytosol	20.36	29.91
TraesCS2D01G070200.1	Wheat	cytosol	29.18	29.63
TraesCS7D01G194300.1	Wheat	cytosol	27.05	29.57
Os08t0195800-00	Rice	cytosol, mitochondrion, nucleus	31.0	29.48
Zm00001d024265_P001	Maize	cytosol	26.75	29.33
TraesCS2B01G178700.1	Wheat	plastid	27.36	29.13
TraesCS2D01G159000.1	Wheat	plastid	27.36	29.13
TraesCS7B01G287400.1	Wheat	cytosol	28.27	28.79
TraesCS7B01G480000.1	Wheat	cytosol	27.96	28.66
TraesCS2B01G085400.1	Wheat	cytosol	27.66	28.44
OQU80048	Sorghum	cytosol	24.62	28.42
TraesCS2B01G085200.1	Wheat	cytosol	27.96	28.4
Zm00001d046526_P001	Maize	plastid	24.32	28.27
TraesCS7D01G381100.1	Wheat	mitochondrion	29.18	28.15
TraesCS2B01G385500.1	Wheat	cytosol, plasma membrane, plastid	19.15	28.12
Zm00001d024764_P001	Maize	cytosol	29.79	27.45
TraesCS2A01G071400.1	Wheat	cytosol	8.81	27.36
HORVU2Hr1G020540.2	Barley	cytosol	23.1	27.05
TraesCS5B01G484200.1	Wheat	cytosol, peroxisome, plastid	15.81	26.94
TraesCS6B01G067700.1	Wheat	plastid	21.88	26.87
TraesCS7D01G555100.1	Wheat	cytosol	27.36	26.87
TraesCS2D01G011000.1	Wheat	cytosol	25.84	26.73
OQU80176	Sorghum	mitochondrion	17.93	26.46
HORVU2Hr1G020470.1	Barley	mitochondrion	9.42	26.27
TraesCS5B01G284300.1	Wheat	cytosol	27.36	26.16
Zm00001d046527_P001	Maize	extracellular, mitochondrion, nucleus	17.63	26.13
TraesCS4D01G274100.1	Wheat	cytosol	11.25	26.06
TraesCS7D01G203500.1	Wheat	plastid	26.75	25.88
TraesCS5D01G292400.1	Wheat	cytosol	27.05	25.87
TraesCS7D01G203600.1	Wheat	plastid	26.44	25.51
Os08t0193900-01	Rice	nucleus	30.7	25.51
TraesCS2A01G119000.1	Wheat	nucleus	32.22	24.54
TraesCS3D01G413100.1	Wheat	cytosol, endoplasmic reticulum, vacuole	25.84	24.43
HORVU2Hr1G077990.2	Barley	plastid	27.66	24.33
OQU80174	Sorghum	cytosol	9.73	23.88
TraesCS6A01G090000.1	Wheat	mitochondrion	25.23	23.51
TraesCS3B01G452600.1	Wheat	extracellular	23.4	23.33
TraesCSU01G016500.1	Wheat	mitochondrion	24.92	23.16
TraesCS6B01G112100.1	Wheat	mitochondrion	24.62	23.14
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	21.28	23.1
TraesCS6B01G310200.1	Wheat	plastid	25.23	22.99
Os08t0195000-00	Rice	cytosol, peroxisome, plastid	17.33	22.8
TraesCS6B01G112000.1	Wheat	mitochondrion	23.71	22.61
TraesCS6A01G089600.1	Wheat	cytosol, mitochondrion	23.4	22.58
HORVU6Hr1G014660.1	Barley	cytosol	14.59	22.54
Os08t0191300-00	Rice	cytosol, golgi	17.33	22.18
EES14677	Sorghum	cytosol, mitochondrion, nucleus, plastid	31.61	22.13
Os08t0193300-00	Rice	cytosol	21.88	21.62
TraesCS6B01G067500.1	Wheat	cytosol, extracellular	15.81	21.4
TraesCS6A01G051000.1	Wheat	plastid	23.71	20.97
TraesCS3D01G413000.1	Wheat	cytosol	27.66	20.78
Os08t0195900-00	Rice	cytosol, mitochondrion, nucleus, plastid	18.84	20.53
TraesCS3B01G452400.1	Wheat	cytosol	27.66	20.45
HORVU6Hr1G070700.2	Barley	mitochondrion	24.32	20.2
TraesCSU01G016600.1	Wheat	mitochondrion	16.41	20.0
TraesCS3B01G452300.1	Wheat	plastid	27.96	19.78
TraesCS3A01G417500.1	Wheat	cytosol	23.4	19.69
TraesCS3D01G412900.1	Wheat	cytosol, plastid	27.96	19.66
TraesCS3B01G452500.1	Wheat	cytosol	27.66	19.24
HORVU3Hr1G092720.1	Barley	cytosol, mitochondrion, nucleus	27.66	19.2
HORVU6Hr1G070690.2	Barley	extracellular, mitochondrion, plasma membrane	17.33	19.06
TraesCS3A01G417400.1	Wheat	cytosol	27.96	18.55
TraesCS5D01G484100.1	Wheat	cytosol	20.36	18.06
Os08t0196200-01	Rice	cytosol	8.51	10.22
Os08t0194000-00	Rice	cytosol, vacuole	1.52	1.32

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078JC08	EnsemblPlants:CDY62000	ProteinID:CDY62000
ProteinID:CDY62000.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00035811001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937
PFscan:PS50181	PANTHER:PTHR44078	PANTHER:PTHR44078:SF5	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004EE40A7	SEG:seg	:	:	:

Description

BnaA03g57200DBnaA03g57200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JC08]

Coordinates

chrLK034076:+:29897..31238

Molecular Weight (calculated)

37004.9 Da

IEP (calculated)

4.399

GRAVY (calculated)

-0.268

Length

329 amino acids

Sequence
(BLAST)

001: MASSSLNSSM GRLSLSSPSP SSPSLTPEMK DGEYRNWSEL PSELTSSILQ RLGPIEVLEK AQKVCMSWRS VSKDPAMWRK IVMHNVEDLR YNLDIMCRHA
101: VDRSQGGLVE IEIWDFGTDS LVNYIADSSG KLRSLKLVKC YLVTDEGLTE ALVKLPLLEE LEVSYGSLSG ESLKSVGQSC PNLKILKLNH KGIKYPRLFS
201: DDDALAIAAT MNGLRHLQLF GNNLTDAGLN AILDCCPDLE HVDLRQCFNV NIVGDLENRC SESIKVLRRP NDSTHDYPYD ASVIIEMYSF EYEFPDDLDQ
301: PDVDILDFPE FDLTDDLRSF LYGGLFDER

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.