Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G466500.1 | Wheat | extracellular | 31.7 | 67.62 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 58.04 | 63.41 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 52.23 | 60.62 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 56.25 | 60.58 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 53.57 | 59.11 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 51.79 | 51.79 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 33.48 | 43.6 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 26.34 | 35.54 |
| Zm00001d024252_P001 | Maize | cytosol | 38.39 | 32.58 |
| TraesCS2B01G178700.1 | Wheat | plastid | 42.86 | 31.07 |
| KXG24675 | Sorghum | cytosol | 37.95 | 29.51 |
| CDY21988 | Canola | cytosol | 18.3 | 27.15 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 38.84 | 27.1 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 39.73 | 25.87 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 29.02 | 25.19 |
| CDX77948 | Canola | cytosol | 18.75 | 24.85 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 33.48 | 23.96 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 31.7 | 23.2 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 33.04 | 22.42 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 29.91 | 21.75 |
| Bra034229.1-P | Field mustard | cytosol | 26.79 | 21.74 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 28.57 | 21.69 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 33.48 | 21.68 |
| TraesCS6B01G067700.1 | Wheat | plastid | 25.89 | 21.64 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 33.48 | 21.43 |
| AT4G05497.1 | Thale cress | plastid | 23.21 | 21.14 |
| CDY48577 | Canola | cytosol | 26.34 | 20.92 |
| Bra034230.1-P | Field mustard | cytosol | 24.55 | 20.91 |
| CDY21333 | Canola | nucleus, plastid | 27.23 | 20.75 |
| CDY48578 | Canola | cytosol | 23.21 | 20.72 |
| CDX73787 | Canola | cytosol | 23.66 | 20.7 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 29.91 | 20.68 |
| CDX99649 | Canola | cytosol | 21.43 | 20.6 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 29.46 | 20.56 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 29.46 | 20.43 |
| CDY21990 | Canola | cytosol | 17.41 | 20.31 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 31.25 | 20.29 |
| TraesCS6B01G310200.1 | Wheat | plastid | 32.59 | 20.22 |
| CDY48580 | Canola | cytosol | 27.68 | 20.2 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 28.57 | 20.0 |
| PGSC0003DMT400052833 | Potato | cytosol | 24.55 | 20.0 |
| PGSC0003DMT400016134 | Potato | cytosol | 25.89 | 20.0 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 29.46 | 20.0 |
| Bra000816.1-P | Field mustard | plastid | 29.02 | 20.0 |
| AT4G05460.1 | Thale cress | cytosol | 26.79 | 19.87 |
| Bra034227.1-P | Field mustard | plastid | 28.12 | 19.81 |
| CDY15937 | Canola | cytosol | 20.54 | 19.74 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 26.79 | 19.61 |
| Bra030690.1-P | Field mustard | cytosol | 24.55 | 19.57 |
| CDY15618 | Canola | cytosol | 24.55 | 19.57 |
| CDY48575 | Canola | plastid | 27.68 | 19.56 |
| AT4G03630.1 | Thale cress | cytosol | 19.2 | 19.55 |
| AT4G05490.1 | Thale cress | plastid | 26.79 | 19.54 |
| CDX86473 | Canola | cytosol | 22.32 | 19.53 |
| Bra034226.1-P | Field mustard | cytosol | 25.0 | 19.44 |
| CDY10283 | Canola | cytosol | 27.23 | 19.43 |
| Bra030342.1-P | Field mustard | cytosol | 20.09 | 19.31 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 22.32 | 19.3 |
| KRH21099 | Soybean | cytosol | 26.79 | 19.29 |
| CDX90789 | Canola | cytosol | 25.89 | 19.27 |
| CDY62000 | Canola | plastid | 28.12 | 19.15 |
| CDY48574 | Canola | cytosol | 25.45 | 19.13 |
| PGSC0003DMT400015035 | Potato | cytosol | 25.89 | 18.95 |
| KRH11147 | Soybean | cytosol | 26.79 | 18.87 |
| CDY48576 | Canola | cytosol | 25.0 | 18.86 |
| Solyc08g013800.2.1 | Tomato | cytosol | 24.55 | 18.71 |
| CDY21986 | Canola | cytosol, plastid | 25.0 | 18.67 |
| PGSC0003DMT400054358 | Potato | cytosol | 28.12 | 18.58 |
| CDY21989 | Canola | cytosol | 6.7 | 18.52 |
| Bra034228.1-P | Field mustard | cytosol | 24.55 | 18.52 |
| AT4G05475.1 | Thale cress | cytosol | 25.45 | 18.45 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 27.68 | 17.97 |
| PGSC0003DMT400015030 | Potato | cytosol | 23.66 | 17.91 |
| TraesCS3B01G452300.1 | Wheat | plastid | 36.61 | 17.63 |
| CDY59275 | Canola | plastid | 25.0 | 17.45 |
| Solyc08g006940.2.1 | Tomato | cytosol | 24.11 | 17.36 |
| CDY09910 | Canola | nucleus | 24.55 | 17.19 |
| PGSC0003DMT400090939 | Potato | cytosol | 23.21 | 17.16 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 26.79 | 17.14 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 36.16 | 17.12 |
| CDY06267 | Canola | nucleus | 25.89 | 16.67 |
| AT5G52480.1 | Thale cress | cytosol | 17.86 | 16.6 |
| Bra000723.1-P | Field mustard | cytosol | 11.16 | 16.45 |
| Bra031582.1-P | Field mustard | nucleus | 25.45 | 16.29 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 31.7 | 15.96 |
| PGSC0003DMT400058969 | Potato | cytosol | 6.25 | 15.73 |
| Bra000817.1-P | Field mustard | plastid | 12.5 | 15.56 |
| Solyc08g013820.2.1 | Tomato | cytosol | 25.45 | 15.32 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 16.07 | 14.81 |
| Bra034194.1-P | Field mustard | cytosol | 26.34 | 11.03 |
| Solyc08g013780.1.1 | Tomato | cytosol | 5.8 | 10.57 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 13.84 | 10.23 |
| CDY22112 | Canola | cytosol | 21.43 | 9.96 |
| Bra020205.1-P | Field mustard | plastid | 24.55 | 9.7 |
| CDY09154 | Canola | plastid | 24.55 | 9.7 |
| CDY21983 | Canola | cytosol | 9.82 | 7.77 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G385500.1 | EnsemblPlantsGene:TraesCS2B01G385500 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44078 | SEG:seg |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | TMHMM:TMhelix | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr2B:-:548969532..548970351
Molecular Weight (calculated)
25763.9 Da
IEP (calculated)
4.094
GRAVY (calculated)
0.042
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDVTPPLPE PPARDWSLLP LDVLSLIFVR LGAVEVLMGA GLVCRWWLQA PKLPEVYRAV DTENDDIAWM DAAVLRAMAR AAVDRSDGQL RVFAGRLFVN
101: DGLMKYIVER SPLLTTLRLE YCFFDVFGTR LINVIRESPL LQLRSLEETY LEVEELTDVL ESCPLLEVLQ VNNCFKIYDD EESLLRAKFA RIKTMTVRCD
201: VDFNYPTDFE SEDFDFASDS EFFQ
101: DGLMKYIVER SPLLTTLRLE YCFFDVFGTR LINVIRESPL LQLRSLEETY LEVEELTDVL ESCPLLEVLQ VNNCFKIYDD EESLLRAKFA RIKTMTVRCD
201: VDFNYPTDFE SEDFDFASDS EFFQ
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.