Skip to main content
crop-pal logo
Wheat
Search for another protein from :
Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 2
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, endoplasmic reticulum
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G05460.1 TraesCS3A01G457400.1 AT4G02570.1 12795696
AT4G05460.1 TraesCS3B01G497300.1 AT4G02570.1 12795696
AT4G05460.1 TraesCS3D01G450200.1 AT4G02570.1 12795696
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G466500.1 Wheat extracellular 37.56 73.33
TraesCS5B01G484600.1 Wheat cytosol 63.9 62.98
TraesCS5B01G484300.1 Wheat cytosol 60.0 60.59
TraesCS2B01G385500.1 Wheat cytosol, plasma membrane, plastid 63.41 58.04
TraesCS5B01G484100.1 Wheat cytosol 58.54 53.57
TraesCS5B01G094800.1 Wheat endoplasmic reticulum 43.41 51.74
TraesCS5B01G484200.1 Wheat cytosol, peroxisome, plastid 48.29 51.3
TraesCS5B01G081700.1 Wheat cytosol 32.2 39.76
Zm00001d024252_P001 Maize cytosol 45.85 35.61
TraesCS2B01G178700.1 Wheat plastid 50.73 33.66
KXG24675 Sorghum cytosol 44.39 31.6
CDY21988 Canola cytosol 22.93 31.13
CDX77948 Canola cytosol 23.41 28.4
TraesCS5B01G284300.1 Wheat cytosol 47.32 28.2
TraesCS7B01G480000.1 Wheat cytosol 43.41 27.73
TraesCS3B01G443100.1 Wheat cytosol 34.63 27.52
CDX99649 Canola cytosol 28.78 25.32
CDY15937 Canola cytosol 28.29 24.89
Bra034230.1-P Field mustard cytosol 31.22 24.33
TraesCS2B01G332200.1 Wheat cytosol 36.59 23.96
CDY48578 Canola cytosol 29.27 23.9
Bra030342.1-P Field mustard cytosol 26.83 23.61
CDX73787 Canola cytosol 29.27 23.44
AT4G05497.1 Thale cress plastid 27.8 23.17
TraesCS1B01G041200.1 Wheat cytosol 37.07 23.03
TraesCS4B01G183700.1 Wheat cytosol 32.68 22.71
TraesCS4B01G183800.1 Wheat cytosol 33.66 22.55
Bra034229.1-P Field mustard cytosol 30.24 22.46
CDY21333 Canola nucleus, plastid 32.2 22.45
PGSC0003DMT400016134 Potato cytosol 31.71 22.41
CDY21989 Canola cytosol 8.78 22.22
TraesCS3B01G452600.1 Wheat extracellular 35.61 22.12
CDY48577 Canola cytosol 30.24 21.99
TraesCS3B01G444000.1 Wheat nucleus 37.07 21.71
TraesCS7B01G205200.1 Wheat mitochondrion 36.59 21.68
Bra034226.1-P Field mustard cytosol 30.24 21.53
Bra034227.1-P Field mustard plastid 33.17 21.38
CDY21990 Canola cytosol 20.0 21.35
CDY15618 Canola cytosol 29.27 21.35
Bra030690.1-P Field mustard cytosol 29.27 21.35
PGSC0003DMT400058969 Potato cytosol 9.27 21.35
TraesCS3B01G443800.1 Wheat nucleus 35.61 21.16
CDY48575 Canola plastid 32.68 21.14
TraesCS7B01G098400.1 Wheat cytosol 31.71 21.1
CDX86473 Canola cytosol 26.34 21.09
TraesCS6B01G067700.1 Wheat plastid 27.32 20.9
AT4G05460.1 Thale cress cytosol 30.73 20.86
CDY48574 Canola cytosol 30.24 20.81
Solyc08g013800.2.1 Tomato cytosol 29.76 20.75
TraesCS2B01G085200.1 Wheat cytosol 32.68 20.68
CDY62000 Canola plastid 33.17 20.67
VIT_10s0003g04300.t01 Wine grape cytosol 32.2 20.56
CDY48580 Canola cytosol 30.73 20.52
AT4G03630.1 Thale cress cytosol 21.95 20.45
TraesCS7B01G287400.1 Wheat cytosol 32.2 20.43
AT4G05470.1 Thale cress cytosol, plastid 30.24 20.26
CDY48576 Canola cytosol 29.27 20.2
AT4G05490.1 Thale cress plastid 30.24 20.2
PGSC0003DMT400052833 Potato cytosol 26.83 20.0
TraesCS2B01G085400.1 Wheat cytosol 31.22 20.0
Bra000816.1-P Field mustard plastid 31.71 20.0
CDY21986 Canola cytosol, plastid 29.27 20.0
PGSC0003DMT400015035 Potato cytosol 29.76 19.93
CDX90789 Canola cytosol 29.27 19.93
KRH11147 Soybean cytosol 30.73 19.81
PGSC0003DMT400054358 Potato cytosol 32.68 19.76
Bra034231.1-P Field mustard cytosol, plastid 24.88 19.69
Bra034228.1-P Field mustard cytosol 28.29 19.53
PGSC0003DMT400090939 Potato cytosol 28.78 19.47
KRH21099 Soybean cytosol 29.27 19.29
Solyc08g006940.2.1 Tomato cytosol 29.27 19.29
TraesCS3B01G452300.1 Wheat plastid 42.93 18.92
PGSC0003DMT400015030 Potato cytosol 27.32 18.92
TraesCS3B01G452500.1 Wheat cytosol 43.41 18.82
AT4G05475.1 Thale cress cytosol 28.29 18.77
CDY59275 Canola plastid 29.27 18.69
CDY10283 Canola cytosol 28.29 18.47
TraesCS3B01G452400.1 Wheat cytosol 40.0 18.43
CDY09910 Canola nucleus 28.29 18.12
AT5G52480.1 Thale cress cytosol 20.98 17.84
TraesCS6B01G112100.1 Wheat mitochondrion 30.24 17.71
CDY06267 Canola nucleus 29.76 17.53
TraesCS6B01G310200.1 Wheat plastid 30.73 17.45
TraesCS6B01G112000.1 Wheat mitochondrion 29.27 17.39
Bra031582.1-P Field mustard nucleus 29.27 17.14
Solyc08g013820.2.1 Tomato cytosol 29.76 16.4
Bra000817.1-P Field mustard plastid 14.15 16.11
Bra000723.1-P Field mustard cytosol 10.73 14.47
TraesCS6B01G067500.1 Wheat cytosol, extracellular 15.12 12.76
Solyc08g013780.1.1 Tomato cytosol 7.32 12.2
Bra034194.1-P Field mustard cytosol 30.73 11.78
CDY22112 Canola cytosol 26.34 11.2
Solyc08g006920.1.1 Tomato cytosol, mitochondrion, nucleus 16.1 10.89
Bra020205.1-P Field mustard plastid 28.78 10.41
CDY09154 Canola plastid 28.78 10.41
CDY21983 Canola cytosol 11.22 8.13
Protein Annotations
EnsemblPlants:TraesCS5B01G484500.1EnsemblPlantsGene:TraesCS5B01G484500Gene3D:1.20.1280.50Gene3D:3.80.10.10GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sf
PANTHER:PTHR44078PFAM:PF00646SEG:segSUPFAM:SSF52047SUPFAM:SSF81383TMHMM:TMhelix
MapMan:35.1:::::
Description
No Description!
Coordinates
chr5B:-:656090033..656090793
Molecular Weight (calculated)
23344.4 Da
IEP (calculated)
6.029
GRAVY (calculated)
0.126
Length
205 amino acids
Sequence
(BLAST)
001: MDDGEPARDW SLLPLDAVAS IFIRLGAVEV LMGAGLVCRS WLEAAKLPDV WRAVDMENHE VVFRKNRLVL RAMAKAAVDR SDGQLRVFAG RFFVTDELLH
101: YILERSPSLS TLRLVWCNVF RAPLVNVMRE SPLLELRSLE LEISRITVGV LSDVLENCPR LEVLWVRDCS GIKDHHEHAL RAQFPRIQTI TVERDVAFLW
201: PACSD
Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.