Factsheet for TraesCS6B01G310200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	TraesCS3A01G457400.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3B01G497300.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3D01G450200.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G070700.2	Barley	mitochondrion	78.67	71.72
TraesCS3B01G443100.1	Wheat	cytosol	33.24	46.51
TraesCS6B01G067700.1	Wheat	plastid	29.92	40.3
TraesCS7B01G205200.1	Wheat	mitochondrion	36.84	38.44
TraesCS3B01G444000.1	Wheat	nucleus	37.12	38.29
TraesCS3B01G443800.1	Wheat	nucleus	36.57	38.26
TraesCS4B01G183700.1	Wheat	cytosol	30.19	36.95
TraesCS4B01G183800.1	Wheat	cytosol	30.47	35.95
TraesCS7B01G098400.1	Wheat	cytosol	30.47	35.71
TraesCS2B01G332200.1	Wheat	cytosol	30.19	34.82
TraesCS6B01G112000.1	Wheat	mitochondrion	32.69	34.2
TraesCS5B01G484300.1	Wheat	cytosol	18.84	33.5
TraesCS7B01G287400.1	Wheat	cytosol	29.92	33.44
TraesCS2B01G385500.1	Wheat	cytosol, plasma membrane, plastid	20.22	32.59
TraesCS6B01G112100.1	Wheat	mitochondrion	31.3	32.29
TraesCS5B01G484100.1	Wheat	cytosol	19.94	32.14
TraesCS5B01G081700.1	Wheat	cytosol	14.68	31.93
Bra000817.1-P	Field mustard	plastid	15.79	31.67
TraesCS5B01G094800.1	Wheat	endoplasmic reticulum	14.96	31.4
Zm00001d046526_P001	Maize	plastid	24.1	30.74
TraesCS5B01G484500.1	Wheat	cytosol	17.45	30.73
TraesCS5B01G484200.1	Wheat	cytosol, peroxisome, plastid	16.07	30.05
AT4G03630.1	Thale cress	cytosol	18.28	30.0
CDY48577	Canola	cytosol	23.27	29.79
TraesCS2B01G178700.1	Wheat	plastid	25.48	29.77
Zm00001d046527_P001	Maize	extracellular, mitochondrion, nucleus	18.28	29.73
Bra034229.1-P	Field mustard	cytosol	22.71	29.71
Bra034230.1-P	Field mustard	cytosol	21.61	29.66
TraesCS6B01G067500.1	Wheat	cytosol, extracellular	19.94	29.63
CDY21989	Canola	cytosol	6.65	29.63
TraesCS5B01G466500.1	Wheat	extracellular	8.59	29.52
TraesCS1B01G041200.1	Wheat	cytosol	26.87	29.39
AT4G05497.1	Thale cress	plastid	19.94	29.27
CDX99649	Canola	cytosol	18.84	29.18
CDY15937	Canola	cytosol	18.84	29.18
Bra030342.1-P	Field mustard	cytosol	18.56	28.76
AT4G05490.1	Thale cress	plastid	24.38	28.66
CDX90789	Canola	cytosol	23.82	28.57
CDY21988	Canola	cytosol	11.91	28.48
CDY21986	Canola	cytosol, plastid	23.55	28.33
CDY48576	Canola	cytosol	23.27	28.28
Bra034226.1-P	Field mustard	cytosol	22.44	28.12
CDX73787	Canola	cytosol	19.94	28.12
PGSC0003DMT400058969	Potato	cytosol	6.93	28.09
CDY48578	Canola	cytosol	19.39	27.89
TraesCS5B01G484600.1	Wheat	cytosol	16.07	27.88
AT4G05460.1	Thale cress	cytosol	23.27	27.81
TraesCS7B01G480000.1	Wheat	cytosol	24.65	27.73
Bra034228.1-P	Field mustard	cytosol	22.71	27.61
CDY21333	Canola	nucleus, plastid	22.44	27.55
CDY15618	Canola	cytosol	21.05	27.05
Bra030690.1-P	Field mustard	cytosol	21.05	27.05
CDX86473	Canola	cytosol	19.11	26.95
CDY48580	Canola	cytosol	22.44	26.38
Solyc08g013780.1.1	Tomato	cytosol	8.86	26.02
TraesCS2B01G085400.1	Wheat	cytosol	22.99	25.94
TraesCS2B01G085200.1	Wheat	cytosol	23.27	25.93
TraesCS5B01G284300.1	Wheat	cytosol	24.65	25.87
VIT_10s0003g04300.t01	Wine grape	cytosol	22.99	25.86
CDY48574	Canola	cytosol	21.33	25.84
Bra034227.1-P	Field mustard	plastid	22.71	25.79
KRH11147	Soybean	cytosol	22.71	25.79
KRH21099	Soybean	cytosol	22.16	25.72
AT4G05475.1	Thale cress	cytosol	21.88	25.57
AT4G05470.1	Thale cress	cytosol, plastid	21.61	25.49
CDY09910	Canola	nucleus	22.44	25.31
CDY48575	Canola	plastid	22.16	25.24
CDY62000	Canola	plastid	22.99	25.23
Solyc08g013800.2.1	Tomato	cytosol	20.5	25.17
Bra034231.1-P	Field mustard	cytosol, plastid	17.45	24.32
CDX77948	Canola	cytosol	11.36	24.26
PGSC0003DMT400016134	Potato	cytosol	19.39	24.14
Bra000816.1-P	Field mustard	plastid	21.61	24.0
CDY10283	Canola	cytosol	20.78	23.89
PGSC0003DMT400015035	Potato	cytosol	20.22	23.86
CDY06267	Canola	nucleus	22.99	23.85
Bra000723.1-P	Field mustard	cytosol	9.97	23.68
CDY59275	Canola	plastid	21.05	23.68
PGSC0003DMT400052833	Potato	cytosol	18.01	23.64
TraesCS3B01G452600.1	Wheat	extracellular	21.61	23.64
Solyc08g006940.2.1	Tomato	cytosol	20.22	23.47
PGSC0003DMT400090939	Potato	cytosol	19.67	23.43
Bra031582.1-P	Field mustard	nucleus	22.71	23.43
AT5G52480.1	Thale cress	cytosol	15.51	23.24
PGSC0003DMT400054358	Potato	cytosol	20.78	22.12
CDY21990	Canola	cytosol	11.63	21.88
PGSC0003DMT400015030	Potato	cytosol	17.73	21.62
Solyc08g013820.2.1	Tomato	cytosol	20.22	19.62
TraesCS3B01G452500.1	Wheat	cytosol	24.93	19.03
TraesCS3B01G452300.1	Wheat	plastid	24.38	18.92
CDY21983	Canola	cytosol	14.68	18.73
TraesCS3B01G452400.1	Wheat	cytosol	22.99	18.65
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	15.51	18.48
Bra034194.1-P	Field mustard	cytosol	22.99	15.51
CDY22112	Canola	cytosol	19.67	14.73
CDY09154	Canola	plastid	21.05	13.4
Bra020205.1-P	Field mustard	plastid	21.05	13.4

Protein Annotations

EnsemblPlants:TraesCS6B01G310200.1	EnsemblPlantsGene:TraesCS6B01G310200	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44078
PANTHER:PTHR44078:SF2	PFAM:PF12937	PFscan:PS50181	SEG:seg	SUPFAM:SSF52047	SUPFAM:SSF81383
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:555548649..555551343

Molecular Weight (calculated)

42194.2 Da

IEP (calculated)

6.440

GRAVY (calculated)

-0.528

Length

361 amino acids

Sequence
(BLAST)

001: MPLLSPPPPP TAAPGCGRRR LSGRRRRRSK RRNWAALPLD VMLYVLHKLD DVELMFGGPA RVCRSWHDAV CEPELWRRID MRGRSRRFRE AVSLKNMAQL
101: SIWFSAGQCR EFFGQHDVDN DLLLFLADRA PLLKSLHLIK HCDVTSETFA KAIMKFPLLD ELELWECETH ETGVFDLVAM ACPQLKHLKH VKDRGYSRYI
201: WLEYPIDNSE ALAIAKMHEL RSLKLFHGGL DNQGLTAILD GCPHLEYLDI RYCNNITMDS NMRAKCARVK KKKLYPYGPT DNWECPWSDI HDDFTIDSEY
301: FEPSITVCSC YRPWDRGYWC YCDDDEPDCR FFNAEPSDSE DSDHSRFFSG AEESEFEYWR T

Best Arabidopsis Sequence Match ( AT4G05475.1 )
(BLAST)

001: MATSTTLQSL LMKEDEEQRN KRRTTSTMFL KKDDEERINW VDLPPELTTS ILLRLSVTDI LDNARKLCRA WRRICKDPSM WRKINLRDCL MYEFDFESMC
101: RHIVDLSQGG LLEINIEHFV SDSLLSYIVD RSCNLKSLGI SIYEPMTNKG VMNGIEKLPL LETLVIFHSS IKLDLKAIGH ACPQLKTLKL NSLGSELAHD
201: ISQVGYIPLL ECDDDALAIA ESMPKLRHLQ LMGNGLTNTG LNAILDGCPH LEEHLDVRKC FNINLVGNLE KRCMKRIKEL RRPHDSTADY PYSISVSMVV
301: QMMITSRYH

Arabidopsis Description

Putative F-box protein At4g05475 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.