Factsheet for HORVU6Hr1G070700.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G098530.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	HORVU3Hr1G098530.4	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G310200.1	Wheat	plastid	71.72	78.67
HORVU6Hr1G070690.2	Barley	extracellular, mitochondrion, plasma membrane	42.93	56.86
HORVU2Hr1G020470.1	Barley	mitochondrion	11.11	37.29
HORVU0Hr1G019800.1	Barley	cytosol	28.54	36.45
Bra000817.1-P	Field mustard	plastid	14.65	32.22
HORVU6Hr1G014660.1	Barley	cytosol	17.17	31.92
HORVU2Hr1G020540.2	Barley	cytosol	22.47	31.67
HORVU2Hr1G027710.1	Barley	cytosol	22.73	30.93
AT4G03630.1	Thale cress	cytosol	17.17	30.91
Zm00001d046526_P001	Maize	plastid	21.97	30.74
Zm00001d046527_P001	Maize	extracellular, mitochondrion, nucleus	16.92	30.18
CDX99649	Canola	cytosol	17.68	30.04
HORVU2Hr1G027770.2	Barley	mitochondrion	22.73	29.8
CDY15937	Canola	cytosol	17.42	29.61
Bra034230.1-P	Field mustard	cytosol	19.44	29.28
Bra030342.1-P	Field mustard	cytosol	17.17	29.18
CDY21988	Canola	cytosol	11.11	29.14
CDY48577	Canola	cytosol	20.71	29.08
Bra034229.1-P	Field mustard	cytosol	20.2	28.99
HORVU1Hr1G004970.3	Barley	cytosol	23.48	28.7
AT4G05497.1	Thale cress	plastid	17.68	28.46
CDY21989	Canola	cytosol	5.81	28.4
CDX90789	Canola	cytosol	21.46	28.24
PGSC0003DMT400058969	Potato	cytosol	6.31	28.09
CDY48578	Canola	cytosol	17.68	27.89
HORVU2Hr1G077990.2	Barley	plastid	26.26	27.81
HORVU5Hr1G020150.1	Barley	mitochondrion	23.74	27.73
AT4G05490.1	Thale cress	plastid	21.46	27.69
CDY21986	Canola	cytosol, plastid	20.96	27.67
Bra034226.1-P	Field mustard	cytosol	19.95	27.43
CDY48576	Canola	cytosol	20.45	27.27
CDY15618	Canola	cytosol	19.19	27.05
Bra030690.1-P	Field mustard	cytosol	19.19	27.05
CDY48580	Canola	cytosol	20.96	27.04
CDX86473	Canola	cytosol	17.42	26.95
CDY21333	Canola	nucleus, plastid	19.95	26.87
Solyc08g013780.1.1	Tomato	cytosol	8.33	26.83
Bra034228.1-P	Field mustard	cytosol	19.95	26.6
CDY48574	Canola	cytosol	19.7	26.17
CDX73787	Canola	cytosol	16.92	26.17
AT4G05460.1	Thale cress	cytosol	19.95	26.16
Bra034227.1-P	Field mustard	plastid	20.96	26.1
Solyc08g013800.2.1	Tomato	cytosol	19.19	25.85
CDY48575	Canola	plastid	20.2	25.24
VIT_10s0003g04300.t01	Wine grape	cytosol	20.45	25.23
KRH21099	Soybean	cytosol	19.7	25.08
CDY09910	Canola	nucleus	20.2	25.0
KRH11147	Soybean	cytosol	19.95	24.84
CDY59275	Canola	plastid	19.95	24.61
AT4G05475.1	Thale cress	cytosol	19.19	24.6
AT4G05470.1	Thale cress	cytosol, plastid	18.94	24.51
PGSC0003DMT400015035	Potato	cytosol	18.94	24.51
AT5G52480.1	Thale cress	cytosol	14.9	24.48
Bra000723.1-P	Field mustard	cytosol	9.34	24.34
CDY62000	Canola	plastid	20.2	24.32
CDX77948	Canola	cytosol	10.35	24.26
Bra034231.1-P	Field mustard	cytosol, plastid	15.66	23.94
PGSC0003DMT400016134	Potato	cytosol	17.42	23.79
Solyc08g006940.2.1	Tomato	cytosol	18.43	23.47
CDY06267	Canola	nucleus	20.45	23.28
PGSC0003DMT400090939	Potato	cytosol	17.68	23.1
CDY10283	Canola	cytosol	18.18	22.93
PGSC0003DMT400052833	Potato	cytosol	15.91	22.91
Bra031582.1-P	Field mustard	nucleus	20.2	22.86
Bra000816.1-P	Field mustard	plastid	18.69	22.77
PGSC0003DMT400015030	Potato	cytosol	16.41	21.96
HORVU3Hr1G092720.1	Barley	cytosol, mitochondrion, nucleus	24.49	20.46
PGSC0003DMT400054358	Potato	cytosol	17.42	20.35
CDY21990	Canola	cytosol	9.85	20.31
Solyc08g013820.2.1	Tomato	cytosol	18.43	19.62
CDY21983	Canola	cytosol	13.64	19.08
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	13.38	17.49
Bra034194.1-P	Field mustard	cytosol	20.96	15.51
CDY22112	Canola	cytosol	17.93	14.73
CDY09154	Canola	plastid	19.7	13.76
Bra020205.1-P	Field mustard	plastid	19.7	13.76

Protein Annotations

EnsemblPlants:HORVU6Hr1G070700.2	EnsemblPlantsGene:HORVU6Hr1G070700	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR44078	PANTHER:PTHR44078:SF2	PFAM:PF12937	PFscan:PS50181	SEG:seg	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI000295990D	UniProt:M0Z3T9	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr6H:-:492566856..492569594

Molecular Weight (calculated)

44875.7 Da

IEP (calculated)

7.774

GRAVY (calculated)

-0.100

Length

396 amino acids

Sequence
(BLAST)

001: MPLLPPPAAA PGCGRRRLSG RRRRRSKRRN WAALPLDVML YVLRKLDDVE LMFGGPAGVC RSWHDAVCEP ELWRRVDMRG RSPRFRETVS LKNMAQLSIW
101: FSAGQCREFF GQHDVDNDLL LFLADRAPLL KSLHLIKRCD ITSETFAKAI MKFPLLEELE LWECETHDTG VFDLVAMACP LLKHVKHVKD RGDSGHIWVE
201: YPVDNSEALA IARMHELRSL KLFHGGLDNQ GLTAILEGCP HLEYLDIRYC SNIIMDSSMR AKCARVKKLY QYAPTDNWVC PWSDIHDDFT IDSSEYLEPD
301: ITIRSCCFHG VVIGIGGIAT MMMSPTVDFS MWSLVTLRTL IILASLVVPR RGSLNIGEPE DLLKFLMEAP GLARCCTHRR PVLSCSNFGH NSGYGS

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.