Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G098530.4 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | HORVU3Hr1G098530.4 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 65.82 | 89.66 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 86.08 | 86.26 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 56.54 | 81.21 |
| Os08t0193200-00 | Rice | cytosol | 16.88 | 69.57 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 65.19 | 69.44 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 63.29 | 68.49 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 54.01 | 65.47 |
| KXG24670 | Sorghum | cytosol | 40.08 | 59.94 |
| Os08t0193500-00 | Rice | cytosol | 25.53 | 55.25 |
| Os08t0193300-00 | Rice | cytosol | 31.65 | 45.05 |
| PGSC0003DMT400058969 | Potato | cytosol | 7.17 | 38.2 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 23.0 | 37.46 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 23.42 | 36.76 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 8.86 | 35.59 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 24.89 | 34.81 |
| KRH21099 | Soybean | cytosol | 22.15 | 33.76 |
| CDY21988 | Canola | cytosol | 10.55 | 33.11 |
| CDX73787 | Canola | cytosol | 17.72 | 32.81 |
| KRH11147 | Soybean | cytosol | 21.94 | 32.7 |
| Bra034230.1-P | Field mustard | cytosol | 18.14 | 32.7 |
| CDY48578 | Canola | cytosol | 17.3 | 32.67 |
| CDX99649 | Canola | cytosol | 16.03 | 32.62 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 21.31 | 32.58 |
| AT4G05460.1 | Thale cress | cytosol | 20.68 | 32.45 |
| CDY21989 | Canola | cytosol | 5.49 | 32.1 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 21.73 | 31.79 |
| Bra034227.1-P | Field mustard | plastid | 21.31 | 31.76 |
| Bra030342.1-P | Field mustard | cytosol | 15.61 | 31.76 |
| CDY15937 | Canola | cytosol | 15.61 | 31.76 |
| CDY48575 | Canola | plastid | 21.1 | 31.55 |
| CDY48580 | Canola | cytosol | 20.25 | 31.27 |
| CDY15618 | Canola | cytosol | 18.14 | 30.61 |
| Bra030690.1-P | Field mustard | cytosol | 18.14 | 30.61 |
| CDX90789 | Canola | cytosol | 19.41 | 30.56 |
| Bra000817.1-P | Field mustard | plastid | 11.6 | 30.56 |
| CDX86473 | Canola | cytosol | 16.46 | 30.47 |
| AT4G03630.1 | Thale cress | cytosol | 14.13 | 30.45 |
| Bra034229.1-P | Field mustard | cytosol | 17.72 | 30.43 |
| AT4G05490.1 | Thale cress | plastid | 19.62 | 30.29 |
| CDY21333 | Canola | nucleus, plastid | 18.78 | 30.27 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 16.46 | 30.12 |
| AT4G05497.1 | Thale cress | plastid | 15.61 | 30.08 |
| PGSC0003DMT400016134 | Potato | cytosol | 18.35 | 30.0 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 20.04 | 29.59 |
| CDX77948 | Canola | cytosol | 10.55 | 29.59 |
| PGSC0003DMT400052833 | Potato | cytosol | 17.09 | 29.45 |
| CDY48576 | Canola | cytosol | 18.35 | 29.29 |
| PGSC0003DMT400015035 | Potato | cytosol | 18.78 | 29.09 |
| AT5G52480.1 | Thale cress | cytosol | 14.77 | 29.05 |
| Solyc08g006940.2.1 | Tomato | cytosol | 18.99 | 28.94 |
| CDY48574 | Canola | cytosol | 18.14 | 28.86 |
| Bra034226.1-P | Field mustard | cytosol | 17.51 | 28.82 |
| PGSC0003DMT400090939 | Potato | cytosol | 18.35 | 28.71 |
| Bra000816.1-P | Field mustard | plastid | 19.62 | 28.62 |
| CDY21986 | Canola | cytosol, plastid | 17.93 | 28.33 |
| Bra034228.1-P | Field mustard | cytosol | 17.72 | 28.28 |
| CDY09910 | Canola | nucleus | 18.99 | 28.12 |
| CDY48577 | Canola | cytosol | 16.67 | 28.01 |
| AT4G05475.1 | Thale cress | cytosol | 18.14 | 27.83 |
| CDY62000 | Canola | plastid | 19.2 | 27.66 |
| Solyc08g013780.1.1 | Tomato | cytosol | 7.17 | 27.64 |
| Solyc08g013800.2.1 | Tomato | cytosol | 17.09 | 27.55 |
| CDY06267 | Canola | nucleus | 20.04 | 27.3 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 17.51 | 27.12 |
| CDY10283 | Canola | cytosol | 17.93 | 27.07 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 16.03 | 27.05 |
| Bra000723.1-P | Field mustard | cytosol | 8.65 | 26.97 |
| Bra031582.1-P | Field mustard | nucleus | 19.83 | 26.86 |
| CDY59275 | Canola | plastid | 18.14 | 26.79 |
| PGSC0003DMT400015030 | Potato | cytosol | 16.67 | 26.69 |
| HORVU2Hr1G077990.2 | Barley | plastid | 20.89 | 26.47 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 20.46 | 24.49 |
| Solyc08g013820.2.1 | Tomato | cytosol | 18.99 | 24.19 |
| PGSC0003DMT400054358 | Potato | cytosol | 17.09 | 23.89 |
| CDY21990 | Canola | cytosol | 9.49 | 23.44 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 9.7 | 21.6 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 11.81 | 18.73 |
| CDY21983 | Canola | cytosol | 11.18 | 18.73 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 11.81 | 18.48 |
| Bra034194.1-P | Field mustard | cytosol | 18.14 | 16.07 |
| CDY22112 | Canola | cytosol | 16.24 | 15.98 |
| Bra020205.1-P | Field mustard | plastid | 17.93 | 14.99 |
| CDY09154 | Canola | plastid | 17.93 | 14.99 |
Protein Annotations
| Gene3D:1.10.20.10 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A287MAQ4 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046982 | EnsemblPlantsGene:HORVU3Hr1G092720 |
| EnsemblPlants:HORVU3Hr1G092720.1 | InterPro:Histone-fold | InterPro:IPR001810 | InterPro:IPR009072 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PFAM:PF12937 | PFscan:PS50181 | PANTHER:PTHR44078 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI000B46FF4C |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:639962978..639967172
Molecular Weight (calculated)
54104.0 Da
IEP (calculated)
4.284
GRAVY (calculated)
-0.443
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: LVLRSGRRER MADPPASPSG DGGIREERDV FVPVADISRI VGKIILPNGK VDEEAVRELV SDCESDRCKR AKREAMTADD LLSEMAKQGF QDHIEPLKEL
101: PCTMEAEPNP LPVSDDVRDW SELPLDVLSA IFMKLGTIEI LMGAGLVCRS WLVTAKSPEL WRFVDMTRHK LVFSKAENVL CKMAKVAIDR SDGQMESFWA
201: QKFVTSELLN YIASRCNSLK SIRLIGAYYF WDNGNVVIKL AAKCPMLEEL EYSDQKQPWS FFTGIGAARP ELKRLRVHLP WFDSDSILRE MRMEQWSGDD
301: EDEEEEEEEE ESDEAWEARH NEEAFAIAES LHELRLLQMA GYGLTNKGVY AILEGCPHLE FLDLRECLHI EVNAELRARC ANIRHVRLPG GGPYVRCPEL
401: QTIEADGGEV IEMDDLYEME IRSQRNELAM DNTADNDDYY GENCCWDDYS LPSSPDSPAL PMYSMDDPTY YWEL
101: PCTMEAEPNP LPVSDDVRDW SELPLDVLSA IFMKLGTIEI LMGAGLVCRS WLVTAKSPEL WRFVDMTRHK LVFSKAENVL CKMAKVAIDR SDGQMESFWA
201: QKFVTSELLN YIASRCNSLK SIRLIGAYYF WDNGNVVIKL AAKCPMLEEL EYSDQKQPWS FFTGIGAARP ELKRLRVHLP WFDSDSILRE MRMEQWSGDD
301: EDEEEEEEEE ESDEAWEARH NEEAFAIAES LHELRLLQMA GYGLTNKGVY AILEGCPHLE FLDLRECLHI EVNAELRARC ANIRHVRLPG GGPYVRCPEL
401: QTIEADGGEV IEMDDLYEME IRSQRNELAM DNTADNDDYY GENCCWDDYS LPSSPDSPAL PMYSMDDPTY YWEL
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.