Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G098530.4 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | HORVU3Hr1G098530.4 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G033100.1 | Wheat | cytosol | 90.74 | 89.63 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 89.51 | 88.41 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 89.2 | 87.58 |
| Os02t0317300-01 | Rice | cytosol | 69.44 | 68.6 |
| Zm00001d010914_P001 | Maize | cytosol | 69.14 | 68.5 |
| EES17669 | Sorghum | cytosol | 67.9 | 66.27 |
| Zm00001d024764_P001 | Maize | cytosol | 52.78 | 47.9 |
| PGSC0003DMT400058969 | Potato | cytosol | 11.73 | 42.7 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 42.28 | 40.41 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 34.88 | 38.83 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 34.88 | 37.42 |
| CDX99649 | Canola | cytosol | 26.85 | 37.34 |
| CDX73787 | Canola | cytosol | 29.32 | 37.11 |
| CDY21989 | Canola | cytosol | 9.26 | 37.04 |
| Solyc08g013780.1.1 | Tomato | cytosol | 13.89 | 36.59 |
| CDY15937 | Canola | cytosol | 26.23 | 36.48 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 13.27 | 36.44 |
| Bra030342.1-P | Field mustard | cytosol | 25.93 | 36.05 |
| Bra000723.1-P | Field mustard | cytosol | 16.67 | 35.53 |
| CDY48578 | Canola | cytosol | 27.47 | 35.46 |
| Bra034226.1-P | Field mustard | cytosol | 31.48 | 35.42 |
| Bra034230.1-P | Field mustard | cytosol | 28.7 | 35.36 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 34.57 | 34.89 |
| CDX90789 | Canola | cytosol | 32.41 | 34.88 |
| Bra034229.1-P | Field mustard | cytosol | 29.63 | 34.78 |
| CDY48574 | Canola | cytosol | 31.79 | 34.56 |
| CDY48580 | Canola | cytosol | 32.72 | 34.53 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 33.02 | 34.52 |
| Bra000817.1-P | Field mustard | plastid | 19.14 | 34.44 |
| Bra034227.1-P | Field mustard | plastid | 33.64 | 34.28 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 27.16 | 33.98 |
| CDY21988 | Canola | cytosol | 15.74 | 33.77 |
| KRH21099 | Soybean | cytosol | 32.41 | 33.76 |
| CDY48575 | Canola | plastid | 32.72 | 33.44 |
| KRH11147 | Soybean | cytosol | 32.72 | 33.33 |
| AT4G03630.1 | Thale cress | cytosol | 22.53 | 33.18 |
| Bra030690.1-P | Field mustard | cytosol | 28.7 | 33.1 |
| CDY15618 | Canola | cytosol | 28.7 | 33.1 |
| PGSC0003DMT400052833 | Potato | cytosol | 28.09 | 33.09 |
| CDX86473 | Canola | cytosol | 25.93 | 32.81 |
| AT4G05460.1 | Thale cress | cytosol | 30.56 | 32.78 |
| AT5G52480.1 | Thale cress | cytosol | 24.38 | 32.78 |
| PGSC0003DMT400016134 | Potato | cytosol | 29.32 | 32.76 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 27.78 | 32.03 |
| PGSC0003DMT400015035 | Potato | cytosol | 30.25 | 32.03 |
| CDY48576 | Canola | cytosol | 29.32 | 31.99 |
| Solyc08g013800.2.1 | Tomato | cytosol | 29.01 | 31.97 |
| CDY21333 | Canola | nucleus, plastid | 29.01 | 31.97 |
| Solyc08g006940.2.1 | Tomato | cytosol | 30.56 | 31.83 |
| CDY59275 | Canola | plastid | 31.48 | 31.78 |
| CDY48577 | Canola | cytosol | 27.47 | 31.56 |
| CDX77948 | Canola | cytosol | 16.36 | 31.36 |
| PGSC0003DMT400015030 | Potato | cytosol | 28.4 | 31.08 |
| Bra034228.1-P | Field mustard | cytosol | 28.4 | 30.98 |
| AT4G05497.1 | Thale cress | plastid | 23.46 | 30.89 |
| PGSC0003DMT400090939 | Potato | cytosol | 28.7 | 30.69 |
| CDY21986 | Canola | cytosol, plastid | 28.4 | 30.67 |
| AT4G05490.1 | Thale cress | plastid | 29.01 | 30.62 |
| Bra000816.1-P | Field mustard | plastid | 30.56 | 30.46 |
| AT4G05475.1 | Thale cress | cytosol | 29.01 | 30.42 |
| CDY62000 | Canola | plastid | 30.86 | 30.4 |
| HORVU2Hr1G077990.2 | Barley | plastid | 33.64 | 29.14 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 27.47 | 29.09 |
| CDY09910 | Canola | nucleus | 28.7 | 29.06 |
| PGSC0003DMT400054358 | Potato | cytosol | 28.7 | 27.43 |
| CDY10283 | Canola | cytosol | 26.54 | 27.39 |
| CDY06267 | Canola | nucleus | 29.32 | 27.3 |
| Bra031582.1-P | Field mustard | nucleus | 28.7 | 26.57 |
| CDY21990 | Canola | cytosol | 15.74 | 26.56 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 17.28 | 26.29 |
| Solyc08g013820.2.1 | Tomato | cytosol | 29.94 | 26.08 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 22.22 | 24.08 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 22.22 | 23.76 |
| CDY21983 | Canola | cytosol | 20.68 | 23.67 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 28.7 | 23.48 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 31.79 | 21.73 |
| Bra034194.1-P | Field mustard | cytosol | 29.63 | 17.94 |
| Bra020205.1-P | Field mustard | plastid | 30.86 | 17.64 |
| CDY09154 | Canola | plastid | 30.86 | 17.64 |
| CDY22112 | Canola | cytosol | 25.0 | 16.8 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A287EIP0 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:HORVU1Hr1G004970 | EnsemblPlants:HORVU1Hr1G004970.3 | InterPro:IPR001810 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF12937 | PFscan:PS50181 | PANTHER:PTHR44078 |
| PANTHER:PTHR44078:SF4 | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI000B4768A7 | SEG:seg |
Description
No Description!
Coordinates
chrchr1H:-:10747230..10750363
Molecular Weight (calculated)
35966.9 Da
IEP (calculated)
3.922
GRAVY (calculated)
-0.248
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEEEEEVE IRDWAGMPSD ALFAVFGKLD VADILAGAGR ACRAWRRLAD GDAALWRRLD MTHHGDILET EEAEAMARAA VDRAAGTLQS FCADTFVTDA
101: LLAYISSRAS LLKSLQLSLC DEVSNEALAE AVKGFPQLEE LDITFCSLNS NVCESVGRAC PRLKSFRLNE RWTMLQRGFA AFEGMDDDTG ALGIASSMPE
201: LRDLQLIGNN LTNVGLAAIL DNCPRLESLD VRRCCNLQMD DAMRSKCARI RNLRLPQDSI SDFKYRAYIA SSDDYPGSDF EVDVYDDLLD VVTDEEDAEF
301: DDMDDYLDEA GSDADMYDDV FGDV
101: LLAYISSRAS LLKSLQLSLC DEVSNEALAE AVKGFPQLEE LDITFCSLNS NVCESVGRAC PRLKSFRLNE RWTMLQRGFA AFEGMDDDTG ALGIASSMPE
201: LRDLQLIGNN LTNVGLAAIL DNCPRLESLD VRRCCNLQMD DAMRSKCARI RNLRLPQDSI SDFKYRAYIA SSDDYPGSDF EVDVYDDLLD VVTDEEDAEF
301: DDMDDYLDEA GSDADMYDDV FGDV
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.