Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d042193_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | Zm00001d042193_P001 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010914_P001 | Maize | cytosol | 60.78 | 66.36 |
| EES17669 | Sorghum | cytosol | 60.5 | 65.06 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 18.21 | 61.32 |
| Os02t0317300-01 | Rice | cytosol | 52.1 | 56.71 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 49.3 | 53.66 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 48.74 | 53.05 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 47.9 | 52.78 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 47.9 | 51.82 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 46.78 | 51.54 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 45.66 | 50.94 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 46.22 | 50.93 |
| Zm00001d024252_P001 | Maize | cytosol | 29.13 | 39.39 |
| Bra000817.1-P | Field mustard | plastid | 18.21 | 36.11 |
| PGSC0003DMT400058969 | Potato | cytosol | 8.96 | 35.96 |
| CDY21989 | Canola | cytosol | 8.12 | 35.8 |
| Zm00001d024265_P001 | Maize | cytosol | 28.85 | 34.33 |
| Bra030342.1-P | Field mustard | cytosol | 22.13 | 33.91 |
| CDX99649 | Canola | cytosol | 22.13 | 33.91 |
| CDY48578 | Canola | cytosol | 23.81 | 33.86 |
| KRH21099 | Soybean | cytosol | 29.13 | 33.44 |
| Solyc08g013780.1.1 | Tomato | cytosol | 11.48 | 33.33 |
| CDX90789 | Canola | cytosol | 28.01 | 33.22 |
| PGSC0003DMT400052833 | Potato | cytosol | 25.49 | 33.09 |
| CDY15937 | Canola | cytosol | 21.57 | 33.05 |
| CDY21333 | Canola | nucleus, plastid | 27.17 | 32.99 |
| Bra000723.1-P | Field mustard | cytosol | 14.01 | 32.89 |
| AT4G03630.1 | Thale cress | cytosol | 20.17 | 32.73 |
| KRH11147 | Soybean | cytosol | 29.13 | 32.7 |
| Bra034226.1-P | Field mustard | cytosol | 26.33 | 32.64 |
| CDX86473 | Canola | cytosol | 23.25 | 32.42 |
| Bra034227.1-P | Field mustard | plastid | 28.85 | 32.39 |
| Bra034230.1-P | Field mustard | cytosol | 23.81 | 32.32 |
| PGSC0003DMT400016134 | Potato | cytosol | 26.05 | 32.07 |
| CDY48580 | Canola | cytosol | 27.45 | 31.92 |
| Bra034229.1-P | Field mustard | cytosol | 24.65 | 31.88 |
| CDX73787 | Canola | cytosol | 22.69 | 31.64 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 19.61 | 31.53 |
| Solyc08g006940.2.1 | Tomato | cytosol | 27.45 | 31.51 |
| Zm00001d046526_P001 | Maize | plastid | 24.93 | 31.45 |
| CDY48575 | Canola | plastid | 27.73 | 31.23 |
| CDY48574 | Canola | cytosol | 26.05 | 31.21 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 28.01 | 31.15 |
| AT4G05460.1 | Thale cress | cytosol | 26.33 | 31.13 |
| Bra030690.1-P | Field mustard | cytosol | 24.37 | 30.96 |
| CDY15618 | Canola | cytosol | 24.37 | 30.96 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 22.41 | 30.89 |
| AT4G05490.1 | Thale cress | plastid | 26.33 | 30.62 |
| PGSC0003DMT400015035 | Potato | cytosol | 26.05 | 30.39 |
| CDY48576 | Canola | cytosol | 25.21 | 30.3 |
| Solyc08g013800.2.1 | Tomato | cytosol | 24.65 | 29.93 |
| CDY59275 | Canola | plastid | 26.89 | 29.91 |
| CDY21988 | Canola | cytosol | 12.61 | 29.8 |
| CDY48577 | Canola | cytosol | 23.53 | 29.79 |
| CDY62000 | Canola | plastid | 27.45 | 29.79 |
| Bra034228.1-P | Field mustard | cytosol | 24.37 | 29.29 |
| AT4G05497.1 | Thale cress | plastid | 20.17 | 29.27 |
| AT5G52480.1 | Thale cress | cytosol | 19.61 | 29.05 |
| PGSC0003DMT400090939 | Potato | cytosol | 24.65 | 29.04 |
| AT4G05475.1 | Thale cress | cytosol | 24.93 | 28.8 |
| PGSC0003DMT400015030 | Potato | cytosol | 23.81 | 28.72 |
| CDY21986 | Canola | cytosol, plastid | 24.09 | 28.67 |
| Bra000816.1-P | Field mustard | plastid | 26.05 | 28.62 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 24.37 | 28.43 |
| CDY09910 | Canola | nucleus | 24.65 | 27.5 |
| CDY10283 | Canola | cytosol | 23.53 | 26.75 |
| CDX77948 | Canola | cytosol | 12.61 | 26.63 |
| PGSC0003DMT400054358 | Potato | cytosol | 25.21 | 26.55 |
| CDY06267 | Canola | nucleus | 24.65 | 25.29 |
| Solyc08g013820.2.1 | Tomato | cytosol | 26.05 | 25.0 |
| Bra031582.1-P | Field mustard | nucleus | 24.37 | 24.86 |
| CDY21990 | Canola | cytosol | 13.17 | 24.48 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 18.49 | 21.78 |
| CDY21983 | Canola | cytosol | 16.25 | 20.49 |
| CDY09154 | Canola | plastid | 26.89 | 16.93 |
| Bra020205.1-P | Field mustard | plastid | 26.89 | 16.93 |
| Bra034194.1-P | Field mustard | cytosol | 24.93 | 16.64 |
| CDY22112 | Canola | cytosol | 20.73 | 15.35 |
Protein Annotations
| EntrezGene:100273165 | Gene3D:3.80.10.10 | MapMan:35.1 | ProteinID:AQK41990.1 | UniProt:B4FTC1 | EMBL:BT040359 |
| EMBL:BT063085 | EMBL:BT069018 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0016874 | InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PFAM:PF12937 | PFAM:PF13516 | PFscan:PS50181 | PANTHER:PTHR44078 |
| PANTHER:PTHR44078:SF4 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00017B8380 | EnsemblPlantsGene:Zm00001d024764 | EnsemblPlants:Zm00001d024764_P001 |
| EnsemblPlants:Zm00001d024764_T001 | : | : | : | : | : |
Description
F-box protein SKIP19
Coordinates
chr10:+:87125356..87129447
Molecular Weight (calculated)
40384.2 Da
IEP (calculated)
4.242
GRAVY (calculated)
-0.186
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLPLPESP MAAENEACDW GEMPSDALVS VFGKLDVIEI LTGAGLVCRA WHRLAASDPM LWRRVDMRHM SYGYEGERLQ TEKVEDMARA AIDPSAGTME
101: PFFADTIVND DLLRCLSQRS GKRLQTEKVE AMARAAIDRS AGTMEAFFAD IFVNDDLLRY LSQRAPSLKC LHLSACNFTD QCFAEAINCF PQLEELDVTL
201: CLLYGSACEA VGRACPQLKR FRLNELWSIS RKEDIGMEAL GIASTMPRLQ ELELIGNNLT NDGLMSILDR CPRLESLDIR ECFNIQMDDA LKLKCSRIRD
301: LRLPHDPIFF DDTRYWPYYI NSGVFDSDID SEVGTYDDPL DDMGESMSIM FNDDFYV
101: PFFADTIVND DLLRCLSQRS GKRLQTEKVE AMARAAIDRS AGTMEAFFAD IFVNDDLLRY LSQRAPSLKC LHLSACNFTD QCFAEAINCF PQLEELDVTL
201: CLLYGSACEA VGRACPQLKR FRLNELWSIS RKEDIGMEAL GIASTMPRLQ ELELIGNNLT NDGLMSILDR CPRLESLDIR ECFNIQMDDA LKLKCSRIRD
301: LRLPHDPIFF DDTRYWPYYI NSGVFDSDID SEVGTYDDPL DDMGESMSIM FNDDFYV
001: MVTSSSSPPL ATSQLPVMKG EEKPSNWAEL PPDLLSSILL RLSPLEILEN ARKVCRSWRR VSKDPLIWRR IDMRNLRRLY CIYAMEACCR HVVDLSQGGL
101: LEFNIDQWRF QTTSLLNYMA ERSSNLRRLR VKGGQITSVG IFEAIVKLPL LEELELLYCS IEEEHFKTIG QACPNLKTLK LVGFWSHLNE SDNDALAIAD
201: TMPGLLHLQL ISNGLTNIGL NAILDGCPHL ECLDLRQCFN INLFGDLERQ CLERIKDFRC PNDVLDDYNY VIFSDNGSIE DEKGEEEENY SYGSDDTEYG
301: YRRSADF
101: LEFNIDQWRF QTTSLLNYMA ERSSNLRRLR VKGGQITSVG IFEAIVKLPL LEELELLYCS IEEEHFKTIG QACPNLKTLK LVGFWSHLNE SDNDALAIAD
201: TMPGLLHLQL ISNGLTNIGL NAILDGCPHL ECLDLRQCFN INLFGDLERQ CLERIKDFRC PNDVLDDYNY VIFSDNGSIE DEKGEEEENY SYGSDDTEYG
301: YRRSADF
Arabidopsis Description
FBL22Putative F-box/LRR-repeat protein 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.