Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g099290.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | Solyc01g099290.2.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015035 | Potato | cytosol | 76.08 | 92.48 |
| Solyc08g013800.2.1 | Tomato | cytosol | 49.46 | 62.59 |
| Solyc08g013780.1.1 | Tomato | cytosol | 18.28 | 55.28 |
| Solyc08g006940.2.1 | Tomato | cytosol | 37.37 | 44.69 |
| CDY21988 | Canola | cytosol | 18.01 | 44.37 |
| AT4G05497.1 | Thale cress | plastid | 28.49 | 43.09 |
| Bra000817.1-P | Field mustard | plastid | 20.16 | 41.67 |
| Bra034230.1-P | Field mustard | cytosol | 29.3 | 41.44 |
| CDY48578 | Canola | cytosol | 27.96 | 41.43 |
| CDX99649 | Canola | cytosol | 25.81 | 41.2 |
| CDX73787 | Canola | cytosol | 28.23 | 41.02 |
| Bra034229.1-P | Field mustard | cytosol | 30.38 | 40.94 |
| AT4G03630.1 | Thale cress | cytosol | 24.19 | 40.91 |
| CDY21989 | Canola | cytosol | 8.87 | 40.74 |
| Bra030342.1-P | Field mustard | cytosol | 25.0 | 39.91 |
| CDX86473 | Canola | cytosol | 27.42 | 39.84 |
| CDY15937 | Canola | cytosol | 24.73 | 39.48 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 33.87 | 39.25 |
| Bra034226.1-P | Field mustard | cytosol | 30.38 | 39.24 |
| Bra030690.1-P | Field mustard | cytosol | 29.57 | 39.15 |
| CDY15618 | Canola | cytosol | 29.57 | 39.15 |
| CDX90789 | Canola | cytosol | 31.45 | 38.87 |
| CDY21333 | Canola | nucleus, plastid | 30.65 | 38.78 |
| CDY48580 | Canola | cytosol | 31.99 | 38.76 |
| CDX77948 | Canola | cytosol | 17.47 | 38.46 |
| CDY48577 | Canola | cytosol | 29.03 | 38.3 |
| CDY48574 | Canola | cytosol | 30.65 | 38.26 |
| Bra000816.1-P | Field mustard | plastid | 33.33 | 38.15 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 26.34 | 37.84 |
| CDY48576 | Canola | cytosol | 30.11 | 37.71 |
| CDY62000 | Canola | plastid | 33.33 | 37.69 |
| Bra034228.1-P | Field mustard | cytosol | 29.84 | 37.37 |
| CDY09910 | Canola | nucleus | 31.72 | 36.88 |
| AT4G05490.1 | Thale cress | plastid | 30.38 | 36.81 |
| CDY21986 | Canola | cytosol, plastid | 29.57 | 36.67 |
| KRH21099 | Soybean | cytosol | 30.65 | 36.66 |
| CDY48575 | Canola | plastid | 31.18 | 36.59 |
| Bra034227.1-P | Field mustard | plastid | 31.18 | 36.48 |
| AT4G05460.1 | Thale cress | cytosol | 29.57 | 36.42 |
| AT5G52480.1 | Thale cress | cytosol | 23.39 | 36.1 |
| KRH11147 | Soybean | cytosol | 30.65 | 35.85 |
| CDY59275 | Canola | plastid | 30.91 | 35.83 |
| Bra000723.1-P | Field mustard | cytosol | 14.52 | 35.53 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 28.76 | 34.97 |
| CDY21990 | Canola | cytosol | 18.01 | 34.9 |
| CDY10283 | Canola | cytosol | 28.76 | 34.08 |
| AT4G05475.1 | Thale cress | cytosol | 28.23 | 33.98 |
| CDY06267 | Canola | nucleus | 31.18 | 33.33 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 23.66 | 32.96 |
| Bra031582.1-P | Field mustard | nucleus | 30.91 | 32.86 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 17.47 | 32.02 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 14.25 | 31.93 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 17.2 | 31.53 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 25.0 | 31.53 |
| Zm00001d024252_P001 | Maize | cytosol | 22.31 | 31.44 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 16.67 | 30.69 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 21.24 | 30.62 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 16.67 | 30.54 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 25.0 | 30.39 |
| Zm00001d010914_P001 | Maize | cytosol | 26.61 | 30.28 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 13.98 | 30.23 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 24.73 | 30.07 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 24.73 | 30.07 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 26.08 | 29.94 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 26.34 | 29.88 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 26.34 | 29.88 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 24.73 | 29.87 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 16.4 | 29.76 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 13.71 | 29.65 |
| Os02t0317300-01 | Rice | cytosol | 26.08 | 29.57 |
| EES17669 | Sorghum | cytosol | 26.34 | 29.52 |
| KXG24675 | Sorghum | cytosol | 22.85 | 29.51 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 24.19 | 29.03 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 23.92 | 28.9 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 25.54 | 28.79 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 8.06 | 28.57 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 24.19 | 28.48 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 23.66 | 28.3 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 26.08 | 28.03 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 15.59 | 27.88 |
| Os02t0317500-01 | Rice | cytosol | 24.73 | 27.88 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 23.39 | 27.8 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 25.27 | 27.73 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 25.27 | 27.17 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 21.24 | 27.15 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 21.24 | 27.15 |
| Os08t0194350-00 | Rice | cytosol | 19.35 | 27.07 |
| Zm00001d024265_P001 | Maize | cytosol | 21.77 | 27.0 |
| Os08t0193200-00 | Rice | cytosol | 8.33 | 26.96 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 21.77 | 26.91 |
| Zm00001d046526_P001 | Maize | plastid | 20.43 | 26.86 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 22.58 | 26.84 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 16.13 | 26.79 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 24.73 | 26.59 |
| EES14679 | Sorghum | nucleus | 24.46 | 26.45 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 24.46 | 26.38 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 21.77 | 26.21 |
| TraesCS2D01G159000.1 | Wheat | plastid | 21.77 | 26.21 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 21.24 | 26.16 |
| Zm00001d024764_P001 | Maize | cytosol | 25.0 | 26.05 |
| OQU80176 | Sorghum | mitochondrion | 15.59 | 26.01 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 15.32 | 25.68 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 22.31 | 25.62 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 15.32 | 25.45 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 22.04 | 25.39 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 6.72 | 25.25 |
| TraesCS2B01G178700.1 | Wheat | plastid | 20.97 | 25.24 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 23.66 | 25.14 |
| Os11t0637300-00 | Rice | cytosol | 8.06 | 25.0 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 22.85 | 24.93 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 23.39 | 24.86 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 23.39 | 24.86 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 22.58 | 24.78 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 21.24 | 24.69 |
| TraesCS6B01G067700.1 | Wheat | plastid | 17.74 | 24.63 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 15.32 | 24.46 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 21.24 | 24.38 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 20.97 | 24.3 |
| KXG24670 | Sorghum | cytosol | 20.7 | 24.29 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 20.7 | 24.21 |
| OQU80048 | Sorghum | cytosol | 18.55 | 24.21 |
| Os08t0193500-00 | Rice | cytosol | 14.25 | 24.2 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 22.85 | 24.08 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 12.37 | 23.83 |
| Os08t0193900-01 | Rice | nucleus | 25.27 | 23.74 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 7.53 | 23.73 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 22.04 | 23.56 |
| Bra020205.1-P | Field mustard | plastid | 35.75 | 23.46 |
| CDY09154 | Canola | plastid | 35.75 | 23.46 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 22.04 | 23.43 |
| HORVU2Hr1G077990.2 | Barley | plastid | 23.39 | 23.26 |
| TraesCS7D01G203600.1 | Wheat | plastid | 21.24 | 23.17 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 22.04 | 23.16 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 17.47 | 23.13 |
| TraesCS7D01G203500.1 | Wheat | plastid | 20.97 | 22.94 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 20.43 | 22.69 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 20.97 | 22.61 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 20.7 | 22.58 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 12.9 | 22.54 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 8.6 | 22.54 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 18.28 | 22.44 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 19.89 | 22.42 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 20.7 | 22.38 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 20.16 | 21.8 |
| CDY21983 | Canola | cytosol | 16.4 | 21.55 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 25.0 | 21.53 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 5.91 | 20.75 |
| Bra034194.1-P | Field mustard | cytosol | 29.84 | 20.75 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 13.44 | 20.58 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 25.81 | 20.43 |
| Os08t0193300-00 | Rice | cytosol | 18.28 | 20.42 |
| TraesCS6B01G310200.1 | Wheat | plastid | 19.62 | 20.22 |
| TraesCS6A01G051000.1 | Wheat | plastid | 20.16 | 20.16 |
| CDY22112 | Canola | cytosol | 25.81 | 19.92 |
| Os08t0191300-00 | Rice | cytosol, golgi | 13.71 | 19.84 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 14.25 | 19.63 |
| OQU80174 | Sorghum | cytosol | 6.99 | 19.4 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 15.59 | 19.4 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 24.19 | 18.99 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 19.62 | 18.43 |
| TraesCS3B01G452300.1 | Wheat | plastid | 22.58 | 18.06 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 22.58 | 17.95 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 22.58 | 17.76 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 20.7 | 17.58 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 20.7 | 17.3 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 22.58 | 16.94 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 16.67 | 16.71 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 13.44 | 16.56 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 11.02 | 16.4 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 17.2 | 16.37 |
| Os08t0196200-01 | Rice | cytosol | 5.65 | 7.66 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.81 | 0.79 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR032675 | UniProt:K4CJ17 | InterPro:LRR_dom_sf |
| PFAM:PF12937 | PFscan:PS50181 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF5 | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| EnsemblPlantsGene:Solyc08g013820.2 | EnsemblPlants:Solyc08g013820.2.1 | UniParc:UPI000276AE9E | SEG:seg | : | : |
Description
No Description!
Coordinates
chr8:-:3270542..3274381
Molecular Weight (calculated)
41832.1 Da
IEP (calculated)
7.130
GRAVY (calculated)
-0.240
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNAEEKVEA SSTAPPPPSP PWVELPAEIT IDILQRLGTI EILESAQRVC STWWKVCHDP AMWRVIDLKR VVCRSKLAYV LEKICRLAVR RSQGQTFKIS
101: IDNFGNERLL SYIASRSSQL RHLRLVKCYN RLSGGLASAA KNFPFLEELH IYFTSITKDD IEIVGRSCPL LKSFVLHASP FDKVRTPPSQ DNDKAVAIAR
201: CMRGLRHLAL IENNLTNEGL QAILDGCPHL ESLDLRCCCC IDLEGDLGRR CSQQIVDLKK PRDSTCDYEF DCKIRHYRSF EDYCRSRFSN YNSFIVGDIH
301: ECLYLYGKFV AETSPLASPP SPAAFRSAGE YIYDVPVTDV FQAGHMDGPP GSSLANVNSL KEGYGVDPRT DL
101: IDNFGNERLL SYIASRSSQL RHLRLVKCYN RLSGGLASAA KNFPFLEELH IYFTSITKDD IEIVGRSCPL LKSFVLHASP FDKVRTPPSQ DNDKAVAIAR
201: CMRGLRHLAL IENNLTNEGL QAILDGCPHL ESLDLRCCCC IDLEGDLGRR CSQQIVDLKK PRDSTCDYEF DCKIRHYRSF EDYCRSRFSN YNSFIVGDIH
301: ECLYLYGKFV AETSPLASPP SPAAFRSAGE YIYDVPVTDV FQAGHMDGPP GSSLANVNSL KEGYGVDPRT DL
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.