Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G287400.1 | Wheat | cytosol | 83.87 | 88.54 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 58.36 | 57.51 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 54.55 | 53.14 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 52.79 | 52.02 |
| OQU80048 | Sorghum | cytosol | 41.64 | 49.82 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 40.18 | 47.08 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 41.94 | 45.69 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 40.18 | 45.51 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 40.18 | 43.35 |
| CDY21989 | Canola | cytosol | 9.68 | 40.74 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 36.95 | 38.41 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 22.29 | 37.44 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 34.6 | 37.11 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 32.55 | 36.27 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 21.11 | 35.64 |
| CDY48580 | Canola | cytosol | 31.96 | 35.5 |
| TraesCS7D01G203600.1 | Wheat | plastid | 35.19 | 35.19 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 14.37 | 34.51 |
| AT4G05460.1 | Thale cress | cytosol | 30.5 | 34.44 |
| Bra034227.1-P | Field mustard | plastid | 31.96 | 34.28 |
| CDY48578 | Canola | cytosol | 25.22 | 34.26 |
| Bra034230.1-P | Field mustard | cytosol | 26.39 | 34.22 |
| CDY48575 | Canola | plastid | 31.67 | 34.07 |
| CDY21333 | Canola | nucleus, plastid | 29.33 | 34.01 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 31.96 | 33.96 |
| CDX99649 | Canola | cytosol | 23.17 | 33.91 |
| CDY15937 | Canola | cytosol | 23.17 | 33.91 |
| Bra000817.1-P | Field mustard | plastid | 17.89 | 33.89 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 17.01 | 33.72 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 25.51 | 33.59 |
| TraesCS7D01G203500.1 | Wheat | plastid | 33.43 | 33.53 |
| Bra030342.1-P | Field mustard | cytosol | 22.87 | 33.48 |
| TraesCS2D01G159000.1 | Wheat | plastid | 30.21 | 33.33 |
| CDY48576 | Canola | cytosol | 29.03 | 33.33 |
| CDY21986 | Canola | cytosol, plastid | 29.03 | 33.0 |
| Bra034226.1-P | Field mustard | cytosol | 27.86 | 32.99 |
| CDX90789 | Canola | cytosol | 29.03 | 32.89 |
| CDX86473 | Canola | cytosol | 24.63 | 32.81 |
| AT4G03630.1 | Thale cress | cytosol | 21.11 | 32.73 |
| Bra034228.1-P | Field mustard | cytosol | 28.45 | 32.66 |
| PGSC0003DMT400058969 | Potato | cytosol | 8.5 | 32.58 |
| KRH21099 | Soybean | cytosol | 29.62 | 32.48 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 30.79 | 32.41 |
| CDY48574 | Canola | cytosol | 28.15 | 32.21 |
| Bra034229.1-P | Field mustard | cytosol | 25.81 | 31.88 |
| Solyc08g013780.1.1 | Tomato | cytosol | 11.44 | 31.71 |
| AT4G05490.1 | Thale cress | plastid | 28.45 | 31.6 |
| CDY21988 | Canola | cytosol | 13.78 | 31.13 |
| Bra030690.1-P | Field mustard | cytosol | 25.51 | 30.96 |
| CDY15618 | Canola | cytosol | 25.51 | 30.96 |
| AT4G05497.1 | Thale cress | plastid | 22.29 | 30.89 |
| Bra000816.1-P | Field mustard | plastid | 29.33 | 30.77 |
| CDY09910 | Canola | nucleus | 28.74 | 30.62 |
| CDX73787 | Canola | cytosol | 22.87 | 30.47 |
| Solyc08g013800.2.1 | Tomato | cytosol | 26.1 | 30.27 |
| Bra000723.1-P | Field mustard | cytosol | 13.49 | 30.26 |
| CDY59275 | Canola | plastid | 28.45 | 30.22 |
| KRH11147 | Soybean | cytosol | 28.15 | 30.19 |
| PGSC0003DMT400016134 | Potato | cytosol | 25.22 | 29.66 |
| Solyc08g006940.2.1 | Tomato | cytosol | 26.98 | 29.58 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 29.03 | 29.55 |
| CDY48577 | Canola | cytosol | 24.34 | 29.43 |
| CDY62000 | Canola | plastid | 28.15 | 29.18 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 26.1 | 29.09 |
| AT5G52480.1 | Thale cress | cytosol | 20.53 | 29.05 |
| CDY10283 | Canola | cytosol | 26.69 | 28.98 |
| PGSC0003DMT400015035 | Potato | cytosol | 25.81 | 28.76 |
| AT4G05475.1 | Thale cress | cytosol | 25.81 | 28.48 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 28.45 | 28.2 |
| PGSC0003DMT400090939 | Potato | cytosol | 24.93 | 28.05 |
| PGSC0003DMT400015030 | Potato | cytosol | 24.34 | 28.04 |
| PGSC0003DMT400052833 | Potato | cytosol | 22.58 | 28.0 |
| CDY06267 | Canola | nucleus | 28.45 | 27.87 |
| CDX77948 | Canola | cytosol | 13.78 | 27.81 |
| PGSC0003DMT400054358 | Potato | cytosol | 27.27 | 27.43 |
| Bra031582.1-P | Field mustard | nucleus | 28.15 | 27.43 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 27.27 | 26.72 |
| CDY21990 | Canola | cytosol | 14.37 | 25.52 |
| CDY21983 | Canola | cytosol | 19.06 | 22.97 |
| Solyc08g013820.2.1 | Tomato | cytosol | 24.93 | 22.85 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 26.69 | 20.78 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 28.15 | 20.51 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 17.01 | 19.14 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 20.23 | 18.6 |
| Bra034194.1-P | Field mustard | cytosol | 29.03 | 18.5 |
| Bra020205.1-P | Field mustard | plastid | 28.45 | 17.11 |
| CDY09154 | Canola | plastid | 28.45 | 17.11 |
| CDY22112 | Canola | cytosol | 23.75 | 16.8 |
| Os08t0196200-01 | Rice | cytosol | 13.2 | 16.42 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G381100.1 | EnsemblPlantsGene:TraesCS7D01G381100 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR44078 | PANTHER:PTHR44078:SF1 | PFAM:PF12937 | PFscan:PS50181 | SEG:seg | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:495306990..495312141
Molecular Weight (calculated)
39269.6 Da
IEP (calculated)
5.554
GRAVY (calculated)
-0.585
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSSSRRRRG PRRRRRKEAA AETRNWADMP LDAILAVFHR LDHIDILMAA DQVCSSWRRA ARDEPALWRR IDMRGNADLS SRINRQGIAC DAVRRSAGQC
101: ESFCGEYAGD AGFLLPQRAV APCLKSLRLI SCDGISLDEF AELIRRFPLL EELELSECPE LLPEVYEVLG QACPQLKHFR MNKQYFLEQK WGNNDADAEG
201: IAGMHELRSL QLVANDLTNK GLAAILENCP RLESLDIRHC FNVKIGDDDD GTLLREKCAR IKTLRLPRDS TDDYHLEVQS PRFAGTEEEI RRAWSISPVY
301: YSPWLQESEE DDDDFYRSPS RYEADLDKYE KVLPRSMRTF L
101: ESFCGEYAGD AGFLLPQRAV APCLKSLRLI SCDGISLDEF AELIRRFPLL EELELSECPE LLPEVYEVLG QACPQLKHFR MNKQYFLEQK WGNNDADAEG
201: IAGMHELRSL QLVANDLTNK GLAAILENCP RLESLDIRHC FNVKIGDDDD GTLLREKCAR IKTLRLPRDS TDDYHLEVQS PRFAGTEEEI RRAWSISPVY
301: YSPWLQESEE DDDDFYRSPS RYEADLDKYE KVLPRSMRTF L
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.