Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | KRG96405 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | KRH68142 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH11147 | Soybean | cytosol | 87.14 | 85.22 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 59.81 | 57.94 |
| CDY21989 | Canola | cytosol | 13.18 | 50.62 |
| Bra000817.1-P | Field mustard | plastid | 28.94 | 50.0 |
| AT4G03630.1 | Thale cress | cytosol | 34.41 | 48.64 |
| Solyc08g006940.2.1 | Tomato | cytosol | 48.55 | 48.55 |
| PGSC0003DMT400090939 | Potato | cytosol | 47.27 | 48.51 |
| AT4G05460.1 | Thale cress | cytosol | 45.98 | 47.35 |
| CDY09910 | Canola | nucleus | 48.55 | 47.19 |
| Bra034230.1-P | Field mustard | cytosol | 39.55 | 46.77 |
| Bra000723.1-P | Field mustard | cytosol | 22.83 | 46.71 |
| CDY21333 | Canola | nucleus, plastid | 44.05 | 46.6 |
| CDY48580 | Canola | cytosol | 45.66 | 46.25 |
| Bra034226.1-P | Field mustard | cytosol | 42.77 | 46.18 |
| CDX99649 | Canola | cytosol | 34.41 | 45.92 |
| Bra030690.1-P | Field mustard | cytosol | 41.48 | 45.91 |
| CDY15618 | Canola | cytosol | 41.48 | 45.91 |
| CDX90789 | Canola | cytosol | 44.37 | 45.85 |
| CDX86473 | Canola | cytosol | 37.62 | 45.7 |
| CDY48574 | Canola | cytosol | 43.73 | 45.64 |
| CDY15937 | Canola | cytosol | 34.08 | 45.49 |
| CDY48578 | Canola | cytosol | 36.66 | 45.42 |
| CDX73787 | Canola | cytosol | 37.3 | 45.31 |
| Bra030342.1-P | Field mustard | cytosol | 33.44 | 44.64 |
| CDY59275 | Canola | plastid | 45.98 | 44.55 |
| Bra000816.1-P | Field mustard | plastid | 45.98 | 44.0 |
| Solyc08g013780.1.1 | Tomato | cytosol | 17.36 | 43.9 |
| PGSC0003DMT400058969 | Potato | cytosol | 12.54 | 43.82 |
| CDY06267 | Canola | nucleus | 48.87 | 43.68 |
| Bra031582.1-P | Field mustard | nucleus | 48.55 | 43.14 |
| Bra034227.1-P | Field mustard | plastid | 44.05 | 43.08 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 35.69 | 42.86 |
| Bra034229.1-P | Field mustard | cytosol | 37.94 | 42.75 |
| AT4G05497.1 | Thale cress | plastid | 33.76 | 42.68 |
| CDY62000 | Canola | plastid | 45.02 | 42.55 |
| CDY10283 | Canola | cytosol | 42.77 | 42.36 |
| AT5G52480.1 | Thale cress | cytosol | 32.8 | 42.32 |
| CDY48576 | Canola | cytosol | 40.19 | 42.09 |
| CDY48575 | Canola | plastid | 42.77 | 41.96 |
| CDY21988 | Canola | cytosol | 20.26 | 41.72 |
| Bra034228.1-P | Field mustard | cytosol | 39.23 | 41.08 |
| CDX77948 | Canola | cytosol | 22.19 | 40.83 |
| PGSC0003DMT400052833 | Potato | cytosol | 36.01 | 40.73 |
| AT4G05490.1 | Thale cress | plastid | 39.87 | 40.39 |
| CDY21986 | Canola | cytosol, plastid | 38.91 | 40.33 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 39.55 | 40.2 |
| CDY48577 | Canola | cytosol | 36.33 | 40.07 |
| AT4G05475.1 | Thale cress | cytosol | 39.23 | 39.48 |
| PGSC0003DMT400016134 | Potato | cytosol | 36.01 | 38.62 |
| Solyc08g013800.2.1 | Tomato | cytosol | 36.01 | 38.1 |
| PGSC0003DMT400015035 | Potato | cytosol | 36.98 | 37.58 |
| PGSC0003DMT400054358 | Potato | cytosol | 40.19 | 36.87 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 31.19 | 36.33 |
| PGSC0003DMT400015030 | Potato | cytosol | 34.41 | 36.15 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 19.94 | 36.05 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 19.94 | 36.05 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 28.94 | 34.88 |
| Zm00001d010914_P001 | Maize | cytosol | 36.01 | 34.25 |
| Os08t0193200-00 | Rice | cytosol | 12.54 | 33.91 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 18.01 | 33.73 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 35.37 | 33.54 |
| CDY21990 | Canola | cytosol | 20.58 | 33.33 |
| Os02t0317300-01 | Rice | cytosol | 35.05 | 33.23 |
| EES17669 | Sorghum | cytosol | 35.37 | 33.13 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 34.41 | 33.02 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 11.25 | 33.02 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 32.48 | 33.01 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 31.19 | 32.88 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 32.15 | 32.68 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 30.55 | 32.65 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 34.41 | 32.62 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 33.76 | 32.41 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 33.76 | 32.41 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 10.93 | 32.38 |
| Zm00001d024265_P001 | Maize | cytosol | 31.19 | 32.33 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 34.08 | 32.12 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 31.51 | 32.03 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 32.8 | 31.88 |
| OQU80176 | Sorghum | mitochondrion | 22.83 | 31.84 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 29.58 | 31.62 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 20.58 | 31.53 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 20.58 | 31.53 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 31.19 | 31.49 |
| Zm00001d024252_P001 | Maize | cytosol | 26.69 | 31.44 |
| EES14679 | Sorghum | nucleus | 34.73 | 31.4 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 23.47 | 31.33 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 9.97 | 31.31 |
| KXG24675 | Sorghum | cytosol | 28.94 | 31.25 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 30.23 | 31.23 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 34.73 | 31.21 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 20.26 | 31.19 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 34.41 | 30.92 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 34.41 | 30.92 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 34.73 | 30.86 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 30.55 | 30.84 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 30.55 | 30.74 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 34.08 | 30.72 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 31.19 | 30.7 |
| Solyc08g013820.2.1 | Tomato | cytosol | 36.66 | 30.65 |
| Os02t0317500-01 | Rice | cytosol | 32.48 | 30.61 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 19.94 | 30.54 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 29.58 | 30.46 |
| TraesCS2D01G159000.1 | Wheat | plastid | 30.23 | 30.42 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 34.08 | 30.29 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 32.8 | 30.09 |
| Os08t0194350-00 | Rice | cytosol | 25.72 | 30.08 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 31.19 | 30.03 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 29.9 | 30.0 |
| Os11t0637300-00 | Rice | cytosol | 11.58 | 30.0 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 29.9 | 29.9 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 32.48 | 29.79 |
| TraesCS2B01G178700.1 | Wheat | plastid | 29.58 | 29.77 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 33.44 | 29.71 |
| CDY21983 | Canola | cytosol | 27.01 | 29.68 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 32.48 | 29.62 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 30.55 | 29.59 |
| KXG24670 | Sorghum | cytosol | 29.9 | 29.34 |
| Zm00001d046526_P001 | Maize | plastid | 26.69 | 29.33 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 19.29 | 29.27 |
| Os08t0193500-00 | Rice | cytosol | 20.58 | 29.22 |
| Zm00001d024764_P001 | Maize | cytosol | 33.44 | 29.13 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 29.26 | 29.07 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 28.62 | 28.43 |
| Os08t0193900-01 | Rice | nucleus | 36.01 | 28.28 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 30.23 | 28.06 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 10.61 | 27.97 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 18.65 | 27.88 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 31.19 | 27.87 |
| OQU80048 | Sorghum | cytosol | 25.4 | 27.72 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 19.61 | 27.48 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 27.65 | 27.04 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 28.62 | 26.97 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 16.72 | 26.94 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 19.29 | 26.79 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 19.29 | 26.79 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 26.05 | 26.73 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 23.79 | 26.33 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 17.68 | 25.82 |
| TraesCS7D01G203500.1 | Wheat | plastid | 27.97 | 25.59 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 28.3 | 25.58 |
| TraesCS6B01G067700.1 | Wheat | plastid | 21.86 | 25.37 |
| TraesCS7D01G203600.1 | Wheat | plastid | 27.65 | 25.22 |
| Bra020205.1-P | Field mustard | plastid | 45.34 | 24.87 |
| CDY09154 | Canola | plastid | 45.34 | 24.87 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 27.33 | 24.71 |
| Bra034194.1-P | Field mustard | cytosol | 42.44 | 24.67 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 10.93 | 23.94 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 33.12 | 23.84 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 27.01 | 23.73 |
| Os08t0193300-00 | Rice | cytosol | 25.4 | 23.72 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 26.69 | 23.71 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 26.69 | 23.51 |
| HORVU2Hr1G077990.2 | Barley | plastid | 27.97 | 23.26 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 35.05 | 23.19 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 25.08 | 22.87 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 17.68 | 22.63 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 33.44 | 22.22 |
| CDY22112 | Canola | cytosol | 34.41 | 22.2 |
| TraesCS6B01G310200.1 | Wheat | plastid | 25.72 | 22.16 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 33.76 | 22.15 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 31.51 | 22.02 |
| TraesCS3B01G452300.1 | Wheat | plastid | 32.8 | 21.94 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 30.55 | 21.69 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 32.8 | 21.56 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 23.79 | 21.45 |
| TraesCS6A01G051000.1 | Wheat | plastid | 25.4 | 21.24 |
| OQU80174 | Sorghum | cytosol | 9.0 | 20.9 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 18.01 | 20.74 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 32.15 | 20.16 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 25.08 | 19.7 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 24.76 | 19.69 |
| Os08t0191300-00 | Rice | cytosol, golgi | 16.08 | 19.46 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 18.65 | 19.21 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 14.79 | 18.4 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 16.08 | 16.72 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 19.61 | 16.44 |
| Os08t0196200-01 | Rice | cytosol | 7.72 | 8.76 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.96 | 0.79 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:100788317 | Gene3D:3.80.10.10 | MapMan:35.1 | EMBL:ACUP02008338 | InterPro:F-box_dom |
| EnsemblPlantsGene:GLYMA_13G220200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | UniProt:I1M1I2 | InterPro:IPR001611 |
| InterPro:IPR001810 | InterPro:IPR032675 | EnsemblPlants:KRH21099 | ProteinID:KRH21099 | ProteinID:KRH21099.1 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF12937 | PFAM:PF13516 | PFscan:PS50181 | PANTHER:PTHR44078 |
| PANTHER:PTHR44078:SF5 | SMART:SM00367 | SUPFAM:SSF52047 | UniParc:UPI000233B077 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr13:-:33363893..33366070
Molecular Weight (calculated)
35299.4 Da
IEP (calculated)
4.242
GRAVY (calculated)
-0.325
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSKEAAAE ERNWLDLPRD VLCTIFQKLG ATEILTRAQG VCSVWRAISK EPLLWRTIDM RNLGDIGLDF HLLAMCHRAI DYSSGHLLHI NVEYFGTDDL
101: LHHITHSTSN LRSLRLACCY QISDEGLCEI AEKLPQLEEL DISISNLTKD PLEAIGQCCP HLKTLKFNME GYRRPHIECD EEAFAIAETM PGLHHLQLFG
201: NKLTNEGLLA ILDGCPLLES LDLRQCFNVN LAGSLGKRCA EQIKELRLPC DPTDDYPFEA EIDYGSLDED YPSGISDIDF LSDDDYDYYE FSGGSDFSEY
301: DDDHPDYYDH F
101: LHHITHSTSN LRSLRLACCY QISDEGLCEI AEKLPQLEEL DISISNLTKD PLEAIGQCCP HLKTLKFNME GYRRPHIECD EEAFAIAETM PGLHHLQLFG
201: NKLTNEGLLA ILDGCPLLES LDLRQCFNVN LAGSLGKRCA EQIKELRLPC DPTDDYPFEA EIDYGSLDED YPSGISDIDF LSDDDYDYYE FSGGSDFSEY
301: DDDHPDYYDH F
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.