Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G098530.4 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | HORVU3Hr1G098530.4 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G183800.1 | Wheat | cytosol | 85.81 | 86.93 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 86.13 | 86.69 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 85.48 | 86.04 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 84.84 | 83.23 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 75.16 | 77.41 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 67.42 | 70.85 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 17.1 | 44.92 |
| Zm00001d024265_P001 | Maize | cytosol | 39.03 | 40.33 |
| HORVU2Hr1G077990.2 | Barley | plastid | 46.13 | 38.24 |
| PGSC0003DMT400058969 | Potato | cytosol | 10.65 | 37.08 |
| CDY21989 | Canola | cytosol | 9.35 | 35.8 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 32.26 | 35.59 |
| OQU80176 | Sorghum | mitochondrion | 25.48 | 35.43 |
| Bra000817.1-P | Field mustard | plastid | 20.32 | 35.0 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 34.52 | 33.02 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 30.97 | 32.99 |
| Bra034227.1-P | Field mustard | plastid | 33.55 | 32.7 |
| CDY15937 | Canola | cytosol | 24.52 | 32.62 |
| CDX99649 | Canola | cytosol | 24.52 | 32.62 |
| Solyc08g013780.1.1 | Tomato | cytosol | 12.9 | 32.52 |
| CDY48578 | Canola | cytosol | 26.13 | 32.27 |
| CDY48580 | Canola | cytosol | 31.94 | 32.25 |
| Bra030342.1-P | Field mustard | cytosol | 24.19 | 32.19 |
| CDY48575 | Canola | plastid | 32.9 | 32.18 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 26.77 | 32.05 |
| Bra034230.1-P | Field mustard | cytosol | 27.1 | 31.94 |
| AT4G03630.1 | Thale cress | cytosol | 22.58 | 31.82 |
| AT4G05460.1 | Thale cress | cytosol | 30.97 | 31.79 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 30.97 | 31.79 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 34.52 | 31.56 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 32.58 | 31.46 |
| CDX86473 | Canola | cytosol | 25.81 | 31.25 |
| CDY21333 | Canola | nucleus, plastid | 29.35 | 30.95 |
| Bra000723.1-P | Field mustard | cytosol | 14.84 | 30.26 |
| Bra030690.1-P | Field mustard | cytosol | 27.42 | 30.25 |
| CDY15618 | Canola | cytosol | 27.42 | 30.25 |
| CDX90789 | Canola | cytosol | 29.35 | 30.23 |
| CDX73787 | Canola | cytosol | 24.84 | 30.08 |
| PGSC0003DMT400015035 | Potato | cytosol | 29.68 | 30.07 |
| PGSC0003DMT400016134 | Potato | cytosol | 28.06 | 30.0 |
| Solyc08g006940.2.1 | Tomato | cytosol | 30.0 | 29.9 |
| KRH21099 | Soybean | cytosol | 30.0 | 29.9 |
| CDY48574 | Canola | cytosol | 28.71 | 29.87 |
| Bra034226.1-P | Field mustard | cytosol | 27.74 | 29.86 |
| Bra000816.1-P | Field mustard | plastid | 31.29 | 29.85 |
| CDY21988 | Canola | cytosol | 14.52 | 29.8 |
| Bra034229.1-P | Field mustard | cytosol | 26.45 | 29.71 |
| AT4G05490.1 | Thale cress | plastid | 29.35 | 29.64 |
| Solyc08g013800.2.1 | Tomato | cytosol | 28.06 | 29.59 |
| CDY62000 | Canola | plastid | 30.97 | 29.18 |
| CDY59275 | Canola | plastid | 30.0 | 28.97 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 28.39 | 28.76 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 36.45 | 28.54 |
| AT4G05475.1 | Thale cress | cytosol | 28.39 | 28.48 |
| AT4G05497.1 | Thale cress | plastid | 22.58 | 28.46 |
| KRH11147 | Soybean | cytosol | 29.03 | 28.3 |
| CDY21990 | Canola | cytosol | 17.42 | 28.12 |
| CDY09910 | Canola | nucleus | 29.03 | 28.12 |
| PGSC0003DMT400090939 | Potato | cytosol | 27.42 | 28.05 |
| CDY21986 | Canola | cytosol, plastid | 27.1 | 28.0 |
| CDY48576 | Canola | cytosol | 26.77 | 27.95 |
| CDY48577 | Canola | cytosol | 24.84 | 27.3 |
| Bra034228.1-P | Field mustard | cytosol | 26.13 | 27.27 |
| CDX77948 | Canola | cytosol | 14.84 | 27.22 |
| PGSC0003DMT400015030 | Potato | cytosol | 25.81 | 27.03 |
| AT5G52480.1 | Thale cress | cytosol | 20.65 | 26.56 |
| CDY10283 | Canola | cytosol | 26.45 | 26.11 |
| PGSC0003DMT400052833 | Potato | cytosol | 22.9 | 25.82 |
| CDY06267 | Canola | nucleus | 28.71 | 25.57 |
| Bra031582.1-P | Field mustard | nucleus | 28.71 | 25.43 |
| PGSC0003DMT400054358 | Potato | cytosol | 27.42 | 25.07 |
| Solyc08g013820.2.1 | Tomato | cytosol | 29.03 | 24.19 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 16.13 | 23.47 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 21.94 | 22.74 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 32.58 | 21.31 |
| CDY21983 | Canola | cytosol | 18.06 | 19.79 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 17.1 | 17.49 |
| Bra034194.1-P | Field mustard | cytosol | 28.71 | 16.64 |
| Bra020205.1-P | Field mustard | plastid | 30.32 | 16.58 |
| CDY09154 | Canola | plastid | 30.32 | 16.58 |
| CDY22112 | Canola | cytosol | 23.87 | 15.35 |
Protein Annotations
| EMBL:AK369004 | EnsemblPlants:HORVU0Hr1G019800.1 | EnsemblPlantsGene:HORVU0Hr1G019800 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF3 | PFAM:PF12937 | PFscan:PS50181 | SEG:seg |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI000200756A | UniProt:F2DYN5 | MapMan:35.1 | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DYN5]
Coordinates
chrchrUn:+:104228480..104230005
Molecular Weight (calculated)
35415.6 Da
IEP (calculated)
4.596
GRAVY (calculated)
-0.223
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPSSPSCL LEEPRRLPPP PEDGMDTEEV VVEESRDWAE LPRDVLLAVL SRLDHIEILM GPDMVCSPWR RAAMDEPELW RRIDMRFHYA DDFYLTSRKF
101: HQMVRAAMRR SAGRCEAFWG GAYVAETNLS LVGDAAPSLK SLRLIECRDM VDLAFKPVIT MFPMLEELEL SNCMHRFPIT LEVIGDACPL LKRFRLSQGS
201: FYSERVDDSA AMAIAMMPEL RSLQLTADSL TNSGLELVLN GCPHLESLDI RSCYHVCMDD DMQAKCSRIK TLRHPEDSMD DYDLPFSYTI PRPCWSTTPI
301: EYAWSCQSPY
101: HQMVRAAMRR SAGRCEAFWG GAYVAETNLS LVGDAAPSLK SLRLIECRDM VDLAFKPVIT MFPMLEELEL SNCMHRFPIT LEVIGDACPL LKRFRLSQGS
201: FYSERVDDSA AMAIAMMPEL RSLQLTADSL TNSGLELVLN GCPHLESLDI RSCYHVCMDD DMQAKCSRIK TLRHPEDSMD DYDLPFSYTI PRPCWSTTPI
301: EYAWSCQSPY
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.