Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0001g14860.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | VIT_18s0001g14860.t01 | AT5G42190.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH21099 | Soybean | cytosol | 57.94 | 59.81 |
| KRH11147 | Soybean | cytosol | 54.52 | 55.03 |
| Solyc08g006940.2.1 | Tomato | cytosol | 50.78 | 52.41 |
| PGSC0003DMT400090939 | Potato | cytosol | 48.91 | 51.82 |
| AT4G05460.1 | Thale cress | cytosol | 47.98 | 50.99 |
| AT4G03630.1 | Thale cress | cytosol | 34.27 | 50.0 |
| CDY21989 | Canola | cytosol | 12.46 | 49.38 |
| Bra000723.1-P | Field mustard | cytosol | 23.36 | 49.34 |
| CDY21988 | Canola | cytosol | 23.05 | 49.01 |
| Bra034230.1-P | Field mustard | cytosol | 39.88 | 48.67 |
| CDY48580 | Canola | cytosol | 46.11 | 48.21 |
| CDY21333 | Canola | nucleus, plastid | 43.93 | 47.96 |
| Bra034226.1-P | Field mustard | cytosol | 42.99 | 47.92 |
| CDY48578 | Canola | cytosol | 37.38 | 47.81 |
| Bra000817.1-P | Field mustard | plastid | 26.79 | 47.78 |
| CDY48574 | Canola | cytosol | 44.24 | 47.65 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 38.01 | 47.1 |
| CDX90789 | Canola | cytosol | 43.61 | 46.51 |
| CDY59275 | Canola | plastid | 46.42 | 46.42 |
| Bra030690.1-P | Field mustard | cytosol | 40.5 | 46.26 |
| CDY15618 | Canola | cytosol | 40.5 | 46.26 |
| CDX73787 | Canola | cytosol | 36.45 | 45.7 |
| CDY09910 | Canola | nucleus | 45.48 | 45.62 |
| Solyc08g013780.1.1 | Tomato | cytosol | 17.45 | 45.53 |
| CDX86473 | Canola | cytosol | 36.14 | 45.31 |
| Bra034227.1-P | Field mustard | plastid | 44.55 | 44.97 |
| PGSC0003DMT400058969 | Potato | cytosol | 12.46 | 44.94 |
| CDY48575 | Canola | plastid | 43.93 | 44.48 |
| CDY62000 | Canola | plastid | 45.48 | 44.38 |
| AT4G05497.1 | Thale cress | plastid | 33.96 | 44.31 |
| Bra000816.1-P | Field mustard | plastid | 44.86 | 44.31 |
| CDX99649 | Canola | cytosol | 32.09 | 44.21 |
| CDY15937 | Canola | cytosol | 32.09 | 44.21 |
| Bra034229.1-P | Field mustard | cytosol | 37.69 | 43.84 |
| Bra030342.1-P | Field mustard | cytosol | 31.78 | 43.78 |
| AT4G05490.1 | Thale cress | plastid | 41.74 | 43.65 |
| Solyc08g013800.2.1 | Tomato | cytosol | 39.88 | 43.54 |
| CDX77948 | Canola | cytosol | 22.74 | 43.2 |
| CDY06267 | Canola | nucleus | 46.73 | 43.1 |
| Bra031582.1-P | Field mustard | nucleus | 46.42 | 42.57 |
| CDY48576 | Canola | cytosol | 39.25 | 42.42 |
| CDY48577 | Canola | cytosol | 37.07 | 42.2 |
| CDY10283 | Canola | cytosol | 41.12 | 42.04 |
| PGSC0003DMT400015035 | Potato | cytosol | 39.88 | 41.83 |
| PGSC0003DMT400016134 | Potato | cytosol | 37.69 | 41.72 |
| Bra034228.1-P | Field mustard | cytosol | 38.32 | 41.41 |
| CDY21986 | Canola | cytosol, plastid | 38.63 | 41.33 |
| PGSC0003DMT400015030 | Potato | cytosol | 38.01 | 41.22 |
| AT5G52480.1 | Thale cress | cytosol | 30.84 | 41.08 |
| PGSC0003DMT400052833 | Potato | cytosol | 33.96 | 39.64 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 31.78 | 39.53 |
| AT4G05475.1 | Thale cress | cytosol | 38.01 | 39.48 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 32.71 | 39.33 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 37.38 | 39.22 |
| PGSC0003DMT400054358 | Potato | cytosol | 41.12 | 38.94 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 24.3 | 38.42 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 12.46 | 38.1 |
| CDY21990 | Canola | cytosol | 22.12 | 36.98 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 23.05 | 36.63 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 22.74 | 35.96 |
| Os11t0637300-00 | Rice | cytosol | 13.4 | 35.83 |
| Zm00001d024252_P001 | Maize | cytosol | 29.28 | 35.61 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 22.43 | 35.47 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 38.32 | 35.14 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 32.09 | 34.92 |
| KXG24675 | Sorghum | cytosol | 31.15 | 34.72 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 37.69 | 34.57 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 34.89 | 34.57 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 17.76 | 34.34 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 36.76 | 34.2 |
| Os02t0317300-01 | Rice | cytosol | 34.89 | 34.15 |
| Zm00001d024265_P001 | Maize | cytosol | 31.78 | 34.0 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 11.21 | 33.96 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 35.83 | 33.92 |
| Solyc08g013820.2.1 | Tomato | cytosol | 39.25 | 33.87 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 34.58 | 33.84 |
| EES14679 | Sorghum | nucleus | 36.14 | 33.72 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 18.07 | 33.72 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 36.76 | 33.71 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 32.09 | 33.66 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 32.09 | 33.66 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 32.09 | 33.66 |
| Zm00001d010914_P001 | Maize | cytosol | 34.27 | 33.64 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 33.96 | 33.23 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 17.76 | 33.14 |
| Os08t0193200-00 | Rice | cytosol | 11.84 | 33.04 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 35.51 | 32.95 |
| EES17669 | Sorghum | cytosol | 33.96 | 32.83 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 33.02 | 32.72 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 33.02 | 32.72 |
| Os08t0194350-00 | Rice | cytosol | 27.1 | 32.71 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 35.2 | 32.66 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 31.46 | 32.58 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 32.71 | 32.51 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 31.46 | 32.48 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 31.15 | 32.47 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 31.15 | 32.47 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 9.97 | 32.32 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 30.22 | 32.23 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 20.56 | 32.2 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 33.02 | 32.12 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 33.96 | 31.96 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 28.97 | 31.96 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 31.78 | 31.88 |
| Os02t0317500-01 | Rice | cytosol | 32.71 | 31.82 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 30.84 | 31.63 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 30.84 | 31.63 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 33.96 | 31.5 |
| OQU80176 | Sorghum | mitochondrion | 21.81 | 31.39 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 11.53 | 31.36 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 22.74 | 31.33 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 30.84 | 31.33 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 21.5 | 30.8 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 27.73 | 30.58 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 32.09 | 30.38 |
| OQU80048 | Sorghum | cytosol | 26.48 | 29.82 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 28.66 | 29.77 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 27.73 | 29.47 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 20.56 | 29.46 |
| KXG24670 | Sorghum | cytosol | 28.97 | 29.34 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 19.0 | 29.33 |
| Os08t0193900-01 | Rice | nucleus | 36.14 | 29.29 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 17.45 | 29.02 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 28.97 | 28.97 |
| TraesCS2D01G159000.1 | Wheat | plastid | 27.73 | 28.8 |
| CDY21983 | Canola | cytosol | 25.23 | 28.62 |
| TraesCS2B01G178700.1 | Wheat | plastid | 27.41 | 28.48 |
| Zm00001d024764_P001 | Maize | cytosol | 31.15 | 28.01 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 27.73 | 27.99 |
| Zm00001d046526_P001 | Maize | plastid | 24.3 | 27.56 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 28.04 | 26.87 |
| TraesCS6B01G067700.1 | Wheat | plastid | 22.12 | 26.49 |
| HORVU2Hr1G077990.2 | Barley | plastid | 30.84 | 26.47 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 11.53 | 26.06 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 22.74 | 25.98 |
| Bra020205.1-P | Field mustard | plastid | 45.79 | 25.93 |
| CDY09154 | Canola | plastid | 45.79 | 25.93 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 28.04 | 25.86 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 17.76 | 25.68 |
| Os08t0193500-00 | Rice | cytosol | 17.45 | 25.57 |
| TraesCS7D01G203600.1 | Wheat | plastid | 27.1 | 25.51 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 26.79 | 25.0 |
| TraesCS7D01G203500.1 | Wheat | plastid | 26.48 | 25.0 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 26.48 | 24.71 |
| Bra034194.1-P | Field mustard | cytosol | 41.12 | 24.67 |
| OQU80174 | Sorghum | cytosol | 10.28 | 24.63 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 25.23 | 24.55 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 22.74 | 24.09 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 32.4 | 24.07 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 15.89 | 23.94 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 25.23 | 23.75 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 34.58 | 23.62 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 25.55 | 23.23 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 25.55 | 23.16 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 25.23 | 23.14 |
| TraesCS6B01G310200.1 | Wheat | plastid | 25.86 | 22.99 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 24.61 | 22.9 |
| CDY22112 | Canola | cytosol | 34.27 | 22.82 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 17.76 | 22.8 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 17.13 | 22.63 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 18.38 | 21.85 |
| Os08t0193300-00 | Rice | cytosol | 22.43 | 21.62 |
| TraesCS6A01G051000.1 | Wheat | plastid | 24.61 | 21.24 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 29.28 | 21.12 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 28.66 | 21.0 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 25.23 | 20.45 |
| Os08t0191300-00 | Rice | cytosol, golgi | 16.2 | 20.23 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 19.0 | 20.2 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 29.59 | 20.04 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 29.28 | 19.87 |
| TraesCS3B01G452300.1 | Wheat | plastid | 28.66 | 19.78 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 18.38 | 19.73 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 28.66 | 19.66 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 23.36 | 19.18 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 28.35 | 18.35 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 20.25 | 17.52 |
| Os08t0196200-01 | Rice | cytosol | 9.66 | 11.31 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 1.25 | 1.06 |
Protein Annotations
| EntrezGene:100265193 | wikigene:100265193 | Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A5ALT6 | EMBL:AM429735 |
| ProteinID:CAN82327 | ProteinID:CAN82327.1 | ProteinID:CBI30970 | ProteinID:CBI30970.3 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| EMBL:FN595992 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001611 | InterPro:IPR001810 |
| InterPro:IPR032675 | EntrezGene:LOC100265193 | wikigene:LOC100265193 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PFAM:PF12937 |
| PFAM:PF13516 | PFscan:PS50181 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF5 | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| UniParc:UPI0001523B9F | ArrayExpress:VIT_10s0003g04300 | EnsemblPlantsGene:VIT_10s0003g04300 | EnsemblPlants:VIT_10s0003g04300.t01 | unigene:Vvi.1887 | RefSeq:XP_002274093 |
| RefSeq:XP_002274093.1 | RefSeq:XP_010655702.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr10:+:7394269..7397548
Molecular Weight (calculated)
36690.8 Da
IEP (calculated)
4.161
GRAVY (calculated)
-0.434
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPPTPDSTS REEEEEERNW QELPRDVTSM ILSKLNAVEI LSSAQFVCSF WRKLCREPMM WRNIDMHNLG DLCDLGYDLE EMARHAVDRS GGQLLSICID
101: DFATDNLLNY IIDRSSHIRH LRLVSCYGIS DDGLSEGIKR LPLLVEIDLC YCSFSKEVLE AIGQCCPRLK SFRLNCQGFR HPHIECDEEA LAIAQNMPGL
201: KSLQLFGNKL TNNGLLAILD GCCHLESLDL RQCFNVNLGG NLAKRCAEQI KILRYPNDST DDYEFDAEIH DDASFDEEYP SGISDLDLLS DGDYYDFSDG
301: SDFSEYDPSD YDPFEQHHFY D
101: DFATDNLLNY IIDRSSHIRH LRLVSCYGIS DDGLSEGIKR LPLLVEIDLC YCSFSKEVLE AIGQCCPRLK SFRLNCQGFR HPHIECDEEA LAIAQNMPGL
201: KSLQLFGNKL TNNGLLAILD GCCHLESLDL RQCFNVNLGG NLAKRCAEQI KILRYPNDST DDYEFDAEIH DDASFDEEYP SGISDLDLLS DGDYYDFSDG
301: SDFSEYDPSD YDPFEQHHFY D
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.