Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G311900.1 | Wheat | cytosol | 48.43 | 49.2 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 40.57 | 42.86 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 41.2 | 41.46 |
| Zm00001d024265_P001 | Maize | cytosol | 38.68 | 41.0 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 40.57 | 36.86 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 33.33 | 36.43 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 39.62 | 36.42 |
| Bra000817.1-P | Field mustard | plastid | 20.44 | 36.11 |
| OQU80176 | Sorghum | mitochondrion | 24.53 | 34.98 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 37.11 | 34.6 |
| CDY21989 | Canola | cytosol | 8.81 | 34.57 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 14.47 | 32.39 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 30.82 | 32.03 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 16.98 | 31.4 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 19.81 | 31.19 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 19.18 | 30.05 |
| CDY48580 | Canola | cytosol | 27.99 | 28.99 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 29.87 | 28.96 |
| CDX73787 | Canola | cytosol | 23.27 | 28.91 |
| CDY48578 | Canola | cytosol | 22.64 | 28.69 |
| AT4G03630.1 | Thale cress | cytosol | 19.81 | 28.64 |
| Bra030342.1-P | Field mustard | cytosol | 20.75 | 28.33 |
| PGSC0003DMT400058969 | Potato | cytosol | 7.86 | 28.09 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 28.62 | 28.09 |
| CDX99649 | Canola | cytosol | 20.44 | 27.9 |
| CDY15937 | Canola | cytosol | 20.44 | 27.9 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 22.64 | 27.8 |
| Bra034230.1-P | Field mustard | cytosol | 22.96 | 27.76 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 27.99 | 27.73 |
| Bra034227.1-P | Field mustard | plastid | 27.67 | 27.67 |
| KRH21099 | Soybean | cytosol | 27.04 | 27.65 |
| CDX90789 | Canola | cytosol | 26.1 | 27.57 |
| Bra034229.1-P | Field mustard | cytosol | 23.9 | 27.54 |
| CDY48575 | Canola | plastid | 27.36 | 27.44 |
| TraesCS7D01G203600.1 | Wheat | plastid | 29.25 | 27.27 |
| TraesCS2D01G159000.1 | Wheat | plastid | 26.42 | 27.18 |
| AT4G05460.1 | Thale cress | cytosol | 25.47 | 26.82 |
| CDX77948 | Canola | cytosol | 14.15 | 26.63 |
| CDY21988 | Canola | cytosol | 12.58 | 26.49 |
| Bra000816.1-P | Field mustard | plastid | 27.04 | 26.46 |
| Bra000723.1-P | Field mustard | cytosol | 12.58 | 26.32 |
| CDY48574 | Canola | cytosol | 24.53 | 26.17 |
| CDX86473 | Canola | cytosol | 21.07 | 26.17 |
| KRH11147 | Soybean | cytosol | 26.1 | 26.1 |
| Bra034226.1-P | Field mustard | cytosol | 23.58 | 26.04 |
| Bra034228.1-P | Field mustard | cytosol | 24.21 | 25.93 |
| CDY48576 | Canola | cytosol | 24.21 | 25.93 |
| AT4G05475.1 | Thale cress | cytosol | 25.16 | 25.89 |
| CDY48577 | Canola | cytosol | 22.96 | 25.89 |
| CDY21333 | Canola | nucleus, plastid | 23.9 | 25.85 |
| CDY62000 | Canola | plastid | 26.73 | 25.84 |
| AT4G05497.1 | Thale cress | plastid | 19.81 | 25.61 |
| CDY10283 | Canola | cytosol | 25.16 | 25.48 |
| TraesCS7D01G203500.1 | Wheat | plastid | 27.04 | 25.29 |
| CDY59275 | Canola | plastid | 25.47 | 25.23 |
| Solyc08g013780.1.1 | Tomato | cytosol | 9.75 | 25.2 |
| PGSC0003DMT400015035 | Potato | cytosol | 24.21 | 25.16 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 24.21 | 25.16 |
| AT4G05490.1 | Thale cress | plastid | 24.21 | 25.08 |
| CDY21986 | Canola | cytosol, plastid | 23.58 | 25.0 |
| CDY15618 | Canola | cytosol | 22.01 | 24.91 |
| Bra030690.1-P | Field mustard | cytosol | 22.01 | 24.91 |
| AT5G52480.1 | Thale cress | cytosol | 18.87 | 24.9 |
| PGSC0003DMT400016134 | Potato | cytosol | 22.64 | 24.83 |
| CDY09910 | Canola | nucleus | 24.84 | 24.69 |
| Solyc08g013800.2.1 | Tomato | cytosol | 22.64 | 24.49 |
| PGSC0003DMT400015030 | Potato | cytosol | 22.01 | 23.65 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 24.84 | 23.58 |
| CDY06267 | Canola | nucleus | 25.47 | 23.28 |
| PGSC0003DMT400052833 | Potato | cytosol | 20.13 | 23.27 |
| PGSC0003DMT400054358 | Potato | cytosol | 24.53 | 23.01 |
| Bra031582.1-P | Field mustard | nucleus | 25.16 | 22.86 |
| CDY21990 | Canola | cytosol | 13.52 | 22.4 |
| PGSC0003DMT400090939 | Potato | cytosol | 21.07 | 22.11 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 23.58 | 21.8 |
| Solyc08g006940.2.1 | Tomato | cytosol | 21.07 | 21.54 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 23.27 | 21.26 |
| Solyc08g013820.2.1 | Tomato | cytosol | 24.21 | 20.7 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 17.61 | 18.48 |
| CDY21983 | Canola | cytosol | 16.04 | 18.02 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 23.9 | 17.35 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 25.47 | 17.31 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 18.55 | 15.9 |
| Bra020205.1-P | Field mustard | plastid | 25.79 | 14.46 |
| CDY09154 | Canola | plastid | 25.79 | 14.46 |
| Bra034194.1-P | Field mustard | cytosol | 24.21 | 14.39 |
| CDY22112 | Canola | cytosol | 19.81 | 13.07 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G011000.1 | EnsemblPlantsGene:TraesCS2D01G011000 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR44078 | PANTHER:PTHR44078:SF3 | PFAM:PF12937 | PFscan:PS50181 | SEG:seg | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:5420318..5422126
Molecular Weight (calculated)
36142.5 Da
IEP (calculated)
6.501
GRAVY (calculated)
-0.225
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPSPSSSL LLEGRPPGLW PPPEWKKKTK PQAVTRDWAD LPRDALLLVL EKLHQVDVLR GPELVCRPWH LAARDEPSLW RRIDLRLSHL PDPSSVWRFH
101: EMGCAAVRRS RGSCEAVYSE GAIDEEAISL LVESAHLLKS LRLINCIWIN DRICYNISHL VMLEELEISN CGVRKFSSTC FAVGYSCPHL KRFRLSSSCF
201: IKRPVWGAVD CEVEGITRMR GLRSLQLFAQ TISTTGLAAI LDSCVQLDSL DIRHCFHVEM GDELMSRCSK FEILRLPHDS TDDYDLEFSA PDMSTESPRP
301: RRMRNYGDEG GAFLEDVY
101: EMGCAAVRRS RGSCEAVYSE GAIDEEAISL LVESAHLLKS LRLINCIWIN DRICYNISHL VMLEELEISN CGVRKFSSTC FAVGYSCPHL KRFRLSSSCF
201: IKRPVWGAVD CEVEGITRMR GLRSLQLFAQ TISTTGLAAI LDSCVQLDSL DIRHCFHVEM GDELMSRCSK FEILRLPHDS TDDYDLEFSA PDMSTESPRP
301: RRMRNYGDEG GAFLEDVY
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.