Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063662 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | PGSC0003DMT400063662 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g013800.2.1 | Tomato | cytosol | 68.58 | 69.05 |
| PGSC0003DMT400015035 | Potato | cytosol | 62.84 | 60.78 |
| Solyc08g013780.1.1 | Tomato | cytosol | 24.66 | 59.35 |
| PGSC0003DMT400054358 | Potato | cytosol | 51.69 | 45.13 |
| PGSC0003DMT400058969 | Potato | cytosol | 13.51 | 44.94 |
| CDY21988 | Canola | cytosol | 21.62 | 42.38 |
| AT4G05497.1 | Thale cress | plastid | 34.8 | 41.87 |
| CDY48578 | Canola | cytosol | 35.14 | 41.43 |
| PGSC0003DMT400090939 | Potato | cytosol | 41.89 | 40.92 |
| AT4G03630.1 | Thale cress | cytosol | 30.41 | 40.91 |
| CDX73787 | Canola | cytosol | 34.8 | 40.23 |
| PGSC0003DMT400016134 | Potato | cytosol | 39.19 | 40.0 |
| Bra034230.1-P | Field mustard | cytosol | 35.14 | 39.54 |
| CDX90789 | Canola | cytosol | 40.2 | 39.53 |
| PGSC0003DMT400052833 | Potato | cytosol | 36.49 | 39.27 |
| Bra034229.1-P | Field mustard | cytosol | 36.49 | 39.13 |
| CDY15937 | Canola | cytosol | 30.74 | 39.06 |
| Bra000723.1-P | Field mustard | cytosol | 19.93 | 38.82 |
| CDX99649 | Canola | cytosol | 30.41 | 38.63 |
| CDY48580 | Canola | cytosol | 39.86 | 38.44 |
| CDX86473 | Canola | cytosol | 33.11 | 38.28 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 33.45 | 38.22 |
| Bra030342.1-P | Field mustard | cytosol | 30.07 | 38.2 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 41.22 | 38.01 |
| CDY21333 | Canola | nucleus, plastid | 37.5 | 37.76 |
| Bra030690.1-P | Field mustard | cytosol | 35.81 | 37.72 |
| CDY15618 | Canola | cytosol | 35.81 | 37.72 |
| AT5G52480.1 | Thale cress | cytosol | 30.41 | 37.34 |
| CDY48574 | Canola | cytosol | 37.5 | 37.25 |
| CDY48577 | Canola | cytosol | 35.47 | 37.23 |
| Bra034226.1-P | Field mustard | cytosol | 36.15 | 37.15 |
| Bra034227.1-P | Field mustard | plastid | 39.86 | 37.11 |
| AT4G05460.1 | Thale cress | cytosol | 37.84 | 37.09 |
| CDY21989 | Canola | cytosol | 10.14 | 37.04 |
| CDY48575 | Canola | plastid | 39.53 | 36.91 |
| CDX77948 | Canola | cytosol | 20.95 | 36.69 |
| Bra000817.1-P | Field mustard | plastid | 21.96 | 36.11 |
| Bra000816.1-P | Field mustard | plastid | 39.53 | 36.0 |
| CDY09910 | Canola | nucleus | 38.85 | 35.94 |
| AT4G05475.1 | Thale cress | cytosol | 37.16 | 35.6 |
| CDY62000 | Canola | plastid | 39.53 | 35.56 |
| CDY48576 | Canola | cytosol | 35.47 | 35.35 |
| AT4G05490.1 | Thale cress | plastid | 36.49 | 35.18 |
| Bra034228.1-P | Field mustard | cytosol | 35.14 | 35.02 |
| CDY21986 | Canola | cytosol, plastid | 35.47 | 35.0 |
| CDY59275 | Canola | plastid | 37.84 | 34.89 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 35.81 | 34.64 |
| KRH11147 | Soybean | cytosol | 37.16 | 34.59 |
| KRH21099 | Soybean | cytosol | 36.15 | 34.41 |
| CDY10283 | Canola | cytosol | 34.8 | 32.8 |
| CDY06267 | Canola | nucleus | 38.51 | 32.76 |
| Bra031582.1-P | Field mustard | nucleus | 37.84 | 32.0 |
| CDY21990 | Canola | cytosol | 20.61 | 31.77 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 16.89 | 30.12 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 10.47 | 29.52 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 30.41 | 29.41 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 19.93 | 29.21 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 30.07 | 29.09 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 19.93 | 29.06 |
| KXG24675 | Sorghum | cytosol | 27.7 | 28.47 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 25.68 | 28.46 |
| Zm00001d024252_P001 | Maize | cytosol | 25.34 | 28.41 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 31.08 | 28.4 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 19.26 | 28.08 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 19.26 | 28.08 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 30.74 | 27.74 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 30.74 | 27.74 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 23.99 | 27.52 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 28.38 | 27.45 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 19.26 | 27.4 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 15.88 | 27.33 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 18.92 | 27.32 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 30.41 | 27.27 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 28.38 | 27.27 |
| Zm00001d010914_P001 | Maize | cytosol | 30.07 | 27.22 |
| EES17669 | Sorghum | cytosol | 30.07 | 26.81 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 26.69 | 26.78 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 15.54 | 26.74 |
| Os02t0317500-01 | Rice | cytosol | 29.73 | 26.67 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 27.7 | 26.62 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 30.41 | 26.55 |
| Os02t0317300-01 | Rice | cytosol | 29.39 | 26.52 |
| Zm00001d046526_P001 | Maize | plastid | 25.0 | 26.15 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 27.03 | 25.81 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 25.34 | 25.77 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 27.03 | 25.32 |
| TraesCS2D01G159000.1 | Wheat | plastid | 26.35 | 25.24 |
| Os08t0193200-00 | Rice | cytosol | 9.8 | 25.22 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 26.35 | 25.08 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 27.36 | 25.08 |
| EES14679 | Sorghum | nucleus | 29.05 | 25.0 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 26.35 | 24.92 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 24.32 | 24.74 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 25.0 | 24.58 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 18.58 | 24.55 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 26.69 | 24.38 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 28.04 | 24.34 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 25.68 | 24.28 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 28.38 | 24.28 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 28.38 | 24.28 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 25.34 | 24.27 |
| Os11t0637300-00 | Rice | cytosol | 9.8 | 24.17 |
| Os08t0194350-00 | Rice | cytosol | 21.62 | 24.06 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 18.92 | 24.03 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 28.04 | 23.99 |
| TraesCS2B01G178700.1 | Wheat | plastid | 25.0 | 23.95 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 24.32 | 23.84 |
| Zm00001d024764_P001 | Maize | cytosol | 28.72 | 23.81 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 17.91 | 23.66 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 25.34 | 23.44 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 17.57 | 23.42 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 7.77 | 23.23 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 27.03 | 23.19 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 25.34 | 23.15 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 25.0 | 23.05 |
| KXG24670 | Sorghum | cytosol | 24.66 | 23.03 |
| Zm00001d024265_P001 | Maize | cytosol | 23.31 | 23.0 |
| OQU80176 | Sorghum | mitochondrion | 17.23 | 22.87 |
| Os08t0193500-00 | Rice | cytosol | 16.55 | 22.37 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 26.35 | 22.29 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 26.35 | 22.29 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 14.53 | 22.28 |
| CDY21983 | Canola | cytosol | 21.28 | 22.26 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 23.65 | 22.01 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 26.01 | 22.0 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 25.0 | 21.83 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 24.66 | 21.79 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 25.68 | 21.53 |
| OQU80048 | Sorghum | cytosol | 20.61 | 21.4 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 24.66 | 21.16 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 10.14 | 21.13 |
| TraesCS7D01G203600.1 | Wheat | plastid | 24.32 | 21.11 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 25.0 | 20.9 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 24.66 | 20.86 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 24.32 | 20.69 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 14.86 | 20.66 |
| TraesCS6B01G067700.1 | Wheat | plastid | 18.58 | 20.52 |
| Os08t0193900-01 | Rice | nucleus | 27.36 | 20.45 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 8.11 | 20.34 |
| HORVU2Hr1G077990.2 | Barley | plastid | 25.68 | 20.32 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 23.31 | 20.23 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 22.3 | 20.0 |
| Bra034194.1-P | Field mustard | cytosol | 35.81 | 19.81 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 7.09 | 19.81 |
| Bra020205.1-P | Field mustard | plastid | 37.84 | 19.75 |
| CDY09154 | Canola | plastid | 37.84 | 19.75 |
| TraesCS7D01G203500.1 | Wheat | plastid | 22.64 | 19.71 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 22.64 | 19.48 |
| CDY22112 | Canola | cytosol | 30.74 | 18.88 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 21.62 | 18.6 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 15.2 | 18.52 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 17.57 | 18.51 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 26.35 | 18.06 |
| OQU80174 | Sorghum | cytosol | 8.11 | 17.91 |
| TraesCS6B01G310200.1 | Wheat | plastid | 21.62 | 17.73 |
| Os08t0193300-00 | Rice | cytosol | 19.93 | 17.72 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 15.88 | 17.41 |
| TraesCS6A01G051000.1 | Wheat | plastid | 21.62 | 17.2 |
| Os08t0191300-00 | Rice | cytosol, golgi | 14.86 | 17.12 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 27.03 | 17.02 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 26.69 | 16.67 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 21.96 | 16.41 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 24.32 | 16.18 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 16.22 | 16.05 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 23.65 | 15.98 |
| TraesCS3B01G452300.1 | Wheat | plastid | 24.66 | 15.7 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 25.0 | 15.64 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 24.66 | 15.6 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 25.34 | 15.12 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 18.58 | 14.82 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 19.26 | 14.58 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 12.16 | 14.4 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 13.85 | 13.58 |
| Os08t0196200-01 | Rice | cytosol | 6.08 | 6.57 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 1.01 | 0.79 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt |
| UniProt:M1A5A8 | PFAM:PF12937 | PFAM:PF13516 | EnsemblPlantsGene:PGSC0003DMG400005867 | PGSC:PGSC0003DMG400005867 | EnsemblPlants:PGSC0003DMT400015030 |
| PFscan:PS50181 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF5 | SUPFAM:SSF52047 | UniParc:UPI0002969F14 | SEG:seg |
Description
Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400005867]
Coordinates
chr8:-:5732649..5733942
Molecular Weight (calculated)
34041.8 Da
IEP (calculated)
5.817
GRAVY (calculated)
-0.283
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNVHKKLKA SSIAPPPPPS PPWVDLPAEI TIDILQRLGT IEILESVQRV CSTWWKVCHD PAMWRVIDLK YDPNLNRMPL VLERICRIGV DRSQGQLLKI
101: SIQNFGSRNL LKYIAERSTQ LRHLRVVMGF YDFAGGLAVY AKNLPYLEEL HMHFTLITQE DIESVGRSCS LLKTFLLNAD ACDRPKNSYP DDGQALTIAR
201: SMPELRHLGL LLNNLTNVGL QAILDGCPHL VSLDLRYCNI DLEGNIGRRC RQQIVDLRQP HASTHDYEFD YEVWLYFNYW SSDNYDSADD SEDENW
101: SIQNFGSRNL LKYIAERSTQ LRHLRVVMGF YDFAGGLAVY AKNLPYLEEL HMHFTLITQE DIESVGRSCS LLKTFLLNAD ACDRPKNSYP DDGQALTIAR
201: SMPELRHLGL LLNNLTNVGL QAILDGCPHL VSLDLRYCNI DLEGNIGRRC RQQIVDLRQP HASTHDYEFD YEVWLYFNYW SSDNYDSADD SEDENW
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.