CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04173

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	EES04173	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G304900.1	Wheat	mitochondrion, nucleus	58.43	75.28
TraesCS7D01G300400.1	Wheat	mitochondrion, nucleus	71.51	71.1
TraesCS7B01G205200.1	Wheat	mitochondrion	71.22	70.81
TraesCS3B01G443100.1	Wheat	cytosol	50.0	66.67
TraesCS3B01G443800.1	Wheat	nucleus	63.95	63.77
TraesCS3B01G444000.1	Wheat	nucleus	64.83	63.71
TraesCS3D01G405300.1	Wheat	nucleus	64.24	63.14
TraesCS3A01G410700.1	Wheat	mitochondrion	63.95	62.86
TraesCS3A01G411000.1	Wheat	nucleus	61.92	62.83
OQU80048	Sorghum	cytosol	40.12	48.42
EES14677	Sorghum	cytosol, mitochondrion, nucleus, plastid	60.17	44.04
Bra000817.1-P	Field mustard	plastid	20.93	40.0
OQU80176	Sorghum	mitochondrion	25.87	39.91
CDY21989	Canola	cytosol	9.3	39.51
EES17669	Sorghum	cytosol	37.5	38.86
OQU80174	Sorghum	cytosol	14.83	38.06
CDY48580	Canola	cytosol	33.14	37.13
KXG24675	Sorghum	cytosol	30.81	36.81
Bra034227.1-P	Field mustard	plastid	34.01	36.79
CDY48575	Canola	plastid	33.72	36.59
CDX99649	Canola	cytosol	24.71	36.48
CDY48578	Canola	cytosol	26.45	36.26
VIT_10s0003g04300.t01	Wine grape	cytosol	33.72	36.14
Bra034230.1-P	Field mustard	cytosol	27.62	36.12
CDY48576	Canola	cytosol	31.1	36.03
AT4G05460.1	Thale cress	cytosol	31.4	35.76
CDY21988	Canola	cytosol	15.7	35.76
CDX90789	Canola	cytosol	31.1	35.55
CDX73787	Canola	cytosol	26.45	35.55
AT4G03630.1	Thale cress	cytosol	22.67	35.45
Bra034228.1-P	Field mustard	cytosol	30.52	35.35
Bra030342.1-P	Field mustard	cytosol	23.84	35.19
CDY15937	Canola	cytosol	23.84	35.19
CDX86473	Canola	cytosol	26.16	35.16
CDY21333	Canola	nucleus, plastid	29.94	35.03
CDY59275	Canola	plastid	32.56	34.89
KRH21099	Soybean	cytosol	31.4	34.73
Bra034226.1-P	Field mustard	cytosol	29.07	34.72
Bra034229.1-P	Field mustard	cytosol	27.62	34.42
CDY62000	Canola	plastid	32.85	34.35
CDY21986	Canola	cytosol, plastid	29.94	34.33
CDY48574	Canola	cytosol	29.65	34.23
AT4G05490.1	Thale cress	plastid	30.52	34.2
Bra030690.1-P	Field mustard	cytosol	27.62	33.81
CDY15618	Canola	cytosol	27.62	33.81
Bra034231.1-P	Field mustard	cytosol, plastid	25.29	33.59
KRH11147	Soybean	cytosol	30.81	33.33
Bra000816.1-P	Field mustard	plastid	31.1	32.92
PGSC0003DMT400058969	Potato	cytosol	8.43	32.58
CDY09910	Canola	nucleus	29.94	32.19
AT4G05497.1	Thale cress	plastid	22.97	32.11
CDX77948	Canola	cytosol	15.7	31.95
CDY10283	Canola	cytosol	29.07	31.85
Solyc08g013780.1.1	Tomato	cytosol	11.34	31.71
PGSC0003DMT400052833	Potato	cytosol	25.29	31.64
CDY48577	Canola	cytosol	25.87	31.56
Solyc08g006940.2.1	Tomato	cytosol	28.49	31.51
PGSC0003DMT400016134	Potato	cytosol	26.45	31.38
Bra000723.1-P	Field mustard	cytosol	13.66	30.92
PGSC0003DMT400090939	Potato	cytosol	27.03	30.69
CDY06267	Canola	nucleus	30.81	30.46
AT4G05475.1	Thale cress	cytosol	27.33	30.42
PGSC0003DMT400015035	Potato	cytosol	27.03	30.39
KXG24670	Sorghum	cytosol	27.91	30.28
Bra031582.1-P	Field mustard	nucleus	30.52	30.0
Solyc08g013800.2.1	Tomato	cytosol	25.58	29.93
AT5G52480.1	Thale cress	cytosol	20.93	29.88
AT4G05470.1	Thale cress	cytosol, plastid	26.16	29.41
PGSC0003DMT400015030	Potato	cytosol	25.0	29.05
PGSC0003DMT400054358	Potato	cytosol	25.87	26.25
CDY21983	Canola	cytosol	21.51	26.15
CDY21990	Canola	cytosol	14.53	26.04
Solyc08g013820.2.1	Tomato	cytosol	26.45	24.46
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	18.9	21.45
Bra020205.1-P	Field mustard	plastid	32.56	19.75
CDY09154	Canola	plastid	32.56	19.75
Bra034194.1-P	Field mustard	cytosol	29.94	19.25
CDY22112	Canola	cytosol	24.71	17.63

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:8085022	UniProt:C5YIE2	EnsemblPlants:EES14679
ProteinID:EES14679	ProteinID:EES14679.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PFAM:PF13516	PFscan:PS50181	PANTHER:PTHR44078	PANTHER:PTHR44078:SF2
SMART:SM00367	EnsemblPlantsGene:SORBI_3007G070500	SUPFAM:SSF52047	SUPFAM:SSF81383	unigene:Sbi.5606	UniParc:UPI0001A87DBE
RefSeq:XP_002445184.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:7811443..7814281

Molecular Weight (calculated)

38948.6 Da

IEP (calculated)

4.684

GRAVY (calculated)

-0.546

Length

344 amino acids

Sequence
(BLAST)

001: MPSSSRRRHG RGRGRGRRSG SKKRNWADLP LDAISAVLRK LDHVEILMGA GQACRSWRRA ARDDPSLWRR IDMCGHADLF NQVDLHGMAQ AAVRRAKGQC
101: EAFWGEYAGD DAFLLFLGEQ APSLKSLRLI SCYDVSNEGF AEAIKKLPLL EELELSLSKN VFGQEVFETV GKSCPHLKRF RLSEHRFYSF EDVDYNKNGE
201: ALGIATMTEL RSLQIFGNNL TNEGLTAILD NCCHLESLDI RHCFNVEMDN TLRAKCAGIK TLRLPNDSTD DYEFIVSNPA WANDSQTQSE DDFDGDMGYD
301: DYYDLDTELG SDDDIYDPSN YIDGIDEDDE EARMILKGLW ALMK

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.