Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 97.0 | 74.86 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 94.01 | 72.54 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 75.66 | 59.59 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 76.78 | 58.57 |
| EES14679 | Sorghum | nucleus | 75.28 | 58.43 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 52.06 | 44.69 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 38.58 | 44.21 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 68.91 | 42.59 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 48.31 | 41.88 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 16.1 | 40.57 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 29.96 | 39.41 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 14.61 | 39.39 |
| Bra000817.1-P | Field mustard | plastid | 25.47 | 37.78 |
| Bra030342.1-P | Field mustard | cytosol | 32.21 | 36.91 |
| CDY15937 | Canola | cytosol | 32.21 | 36.91 |
| CDX99649 | Canola | cytosol | 32.21 | 36.91 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 41.57 | 35.92 |
| CDY21989 | Canola | cytosol | 10.86 | 35.8 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 43.82 | 35.67 |
| CDY48578 | Canola | cytosol | 33.33 | 35.46 |
| AT4G05460.1 | Thale cress | cytosol | 40.07 | 35.43 |
| CDY21988 | Canola | cytosol | 19.85 | 35.1 |
| CDY21333 | Canola | nucleus, plastid | 38.58 | 35.03 |
| Bra034227.1-P | Field mustard | plastid | 41.57 | 34.91 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 39.7 | 34.64 |
| Bra034229.1-P | Field mustard | cytosol | 35.58 | 34.42 |
| CDY48575 | Canola | plastid | 40.82 | 34.38 |
| Bra034230.1-P | Field mustard | cytosol | 33.71 | 34.22 |
| CDX73787 | Canola | cytosol | 32.58 | 33.98 |
| CDY48580 | Canola | cytosol | 38.95 | 33.88 |
| AT4G05497.1 | Thale cress | plastid | 30.71 | 33.33 |
| AT4G03630.1 | Thale cress | cytosol | 27.34 | 33.18 |
| CDY48576 | Canola | cytosol | 36.7 | 33.0 |
| Bra034226.1-P | Field mustard | cytosol | 35.58 | 32.99 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 39.33 | 32.71 |
| CDY21986 | Canola | cytosol, plastid | 36.7 | 32.67 |
| Bra034228.1-P | Field mustard | cytosol | 36.33 | 32.66 |
| CDX90789 | Canola | cytosol | 36.7 | 32.56 |
| CDX86473 | Canola | cytosol | 31.09 | 32.42 |
| CDY48574 | Canola | cytosol | 35.96 | 32.21 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 31.09 | 32.05 |
| CDX77948 | Canola | cytosol | 20.22 | 31.95 |
| CDY48577 | Canola | cytosol | 33.71 | 31.91 |
| CDY62000 | Canola | plastid | 38.95 | 31.61 |
| CDY59275 | Canola | plastid | 37.83 | 31.46 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 41.57 | 31.44 |
| Bra030690.1-P | Field mustard | cytosol | 32.96 | 31.32 |
| CDY15618 | Canola | cytosol | 32.96 | 31.32 |
| KRH21099 | Soybean | cytosol | 36.33 | 31.19 |
| AT4G05490.1 | Thale cress | plastid | 35.58 | 30.94 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 39.33 | 30.79 |
| Bra000816.1-P | Field mustard | plastid | 37.45 | 30.77 |
| CDY09910 | Canola | nucleus | 36.33 | 30.31 |
| Solyc08g013800.2.1 | Tomato | cytosol | 33.33 | 30.27 |
| Solyc08g006940.2.1 | Tomato | cytosol | 35.21 | 30.23 |
| PGSC0003DMT400052833 | Potato | cytosol | 31.09 | 30.18 |
| CDY10283 | Canola | cytosol | 35.21 | 29.94 |
| PGSC0003DMT400016134 | Potato | cytosol | 32.21 | 29.66 |
| TraesCS6A01G051000.1 | Wheat | plastid | 41.2 | 29.57 |
| KRH11147 | Soybean | cytosol | 35.21 | 29.56 |
| PGSC0003DMT400015035 | Potato | cytosol | 33.71 | 29.41 |
| AT4G05475.1 | Thale cress | cytosol | 33.33 | 28.8 |
| PGSC0003DMT400090939 | Potato | cytosol | 32.58 | 28.71 |
| CDY06267 | Canola | nucleus | 36.7 | 28.16 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 32.21 | 28.1 |
| PGSC0003DMT400058969 | Potato | cytosol | 9.36 | 28.09 |
| Bra031582.1-P | Field mustard | nucleus | 36.33 | 27.71 |
| Solyc08g013780.1.1 | Tomato | cytosol | 12.36 | 26.83 |
| CDY21990 | Canola | cytosol | 18.73 | 26.04 |
| AT5G52480.1 | Thale cress | cytosol | 23.22 | 25.73 |
| PGSC0003DMT400015030 | Potato | cytosol | 28.46 | 25.68 |
| Bra000723.1-P | Field mustard | cytosol | 14.61 | 25.66 |
| PGSC0003DMT400054358 | Potato | cytosol | 31.84 | 25.07 |
| Solyc08g013820.2.1 | Tomato | cytosol | 32.96 | 23.66 |
| CDY21983 | Canola | cytosol | 23.6 | 22.26 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 29.59 | 20.2 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 36.33 | 19.56 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 21.72 | 19.14 |
| CDY22112 | Canola | cytosol | 32.21 | 17.84 |
| Bra020205.1-P | Field mustard | plastid | 37.83 | 17.81 |
| CDY09154 | Canola | plastid | 37.83 | 17.81 |
| Bra034194.1-P | Field mustard | cytosol | 35.58 | 17.76 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G304900.1 | EnsemblPlantsGene:TraesCS7A01G304900 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF2 | PFAM:PF12937 | PFAM:PF13516 |
| PFscan:PS50181 | SEG:seg | SUPFAM:SSF52047 | SUPFAM:SSF81383 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr7A:-:429047172..429050566
Molecular Weight (calculated)
30405.3 Da
IEP (calculated)
8.226
GRAVY (calculated)
-0.442
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSSSGRRRR GRRGTRRRHR NSTRTWAELP LVAISTILHK LDHIEILMGA GQVCRSWRRA ARDEPELWRR IDMRFHADLF YQLNLHGMAQ AAVRRSKGQC
101: EAFWGEYAGD DDFLLYLGDQ APSPKSLRLI SCYDVSNEGF TVAIEKFPLL EELELSLCSN VGEGGVFGVV GKACPQLKRF RQSKHSFFDF EASGYNKDDE
201: ALGVATMREL RSLQLFGNNL TNEGLTAILD NCQHLESLDI RHCFNVNMDD TLRAKCGRIN TVMLPHD
101: EAFWGEYAGD DDFLLYLGDQ APSPKSLRLI SCYDVSNEGF TVAIEKFPLL EELELSLCSN VGEGGVFGVV GKACPQLKRF RQSKHSFFDF EASGYNKDDE
201: ALGVATMREL RSLQLFGNNL TNEGLTAILD NCQHLESLDI RHCFNVNMDD TLRAKCGRIN TVMLPHD
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.