Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G413000.1 | Wheat | cytosol | 82.1 | 73.29 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 82.1 | 72.13 |
| Os08t0193200-00 | Rice | cytosol | 20.72 | 70.43 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 65.47 | 54.01 |
| Os08t0193500-00 | Rice | cytosol | 29.92 | 53.42 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 13.3 | 52.53 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 60.87 | 47.98 |
| KXG24670 | Sorghum | cytosol | 38.11 | 47.0 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 11.0 | 40.57 |
| Os08t0193300-00 | Rice | cytosol | 29.16 | 34.23 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 17.65 | 33.99 |
| CDY21988 | Canola | cytosol | 13.04 | 33.77 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 24.3 | 30.74 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 20.2 | 29.59 |
| CDX77948 | Canola | cytosol | 12.53 | 28.99 |
| Bra034230.1-P | Field mustard | cytosol | 18.67 | 27.76 |
| CDY48578 | Canola | cytosol | 17.65 | 27.49 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 21.48 | 27.45 |
| CDX99649 | Canola | cytosol | 15.6 | 26.18 |
| AT4G05497.1 | Thale cress | plastid | 16.37 | 26.02 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 20.46 | 25.97 |
| AT4G05460.1 | Thale cress | cytosol | 19.95 | 25.83 |
| Bra030342.1-P | Field mustard | cytosol | 15.35 | 25.75 |
| CDY48580 | Canola | cytosol | 20.2 | 25.73 |
| CDY15937 | Canola | cytosol | 15.09 | 25.32 |
| CDY48574 | Canola | cytosol | 19.18 | 25.17 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 22.51 | 25.14 |
| CDX73787 | Canola | cytosol | 16.37 | 25.0 |
| CDX90789 | Canola | cytosol | 19.18 | 24.92 |
| Bra034227.1-P | Field mustard | plastid | 20.2 | 24.84 |
| KRH21099 | Soybean | cytosol | 19.69 | 24.76 |
| CDY48575 | Canola | plastid | 19.95 | 24.61 |
| PGSC0003DMT400016134 | Potato | cytosol | 18.16 | 24.48 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 20.46 | 24.39 |
| Bra034226.1-P | Field mustard | cytosol | 17.9 | 24.31 |
| Bra034229.1-P | Field mustard | cytosol | 17.14 | 24.28 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 20.97 | 24.19 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 19.18 | 24.12 |
| CDY21333 | Canola | nucleus, plastid | 17.9 | 23.81 |
| Bra000816.1-P | Field mustard | plastid | 19.69 | 23.69 |
| KRH11147 | Soybean | cytosol | 19.18 | 23.58 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 15.6 | 23.55 |
| CDY15618 | Canola | cytosol | 16.88 | 23.49 |
| Bra030690.1-P | Field mustard | cytosol | 16.88 | 23.49 |
| CDY62000 | Canola | plastid | 19.69 | 23.4 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 19.18 | 23.36 |
| CDY48576 | Canola | cytosol | 17.65 | 23.23 |
| AT4G05490.1 | Thale cress | plastid | 18.16 | 23.13 |
| CDY48577 | Canola | cytosol | 16.62 | 23.05 |
| CDY21986 | Canola | cytosol, plastid | 17.65 | 23.0 |
| Bra034228.1-P | Field mustard | cytosol | 17.39 | 22.9 |
| CDX86473 | Canola | cytosol | 14.83 | 22.66 |
| PGSC0003DMT400058969 | Potato | cytosol | 5.12 | 22.47 |
| CDY21990 | Canola | cytosol | 11.0 | 22.4 |
| CDY59275 | Canola | plastid | 18.16 | 22.12 |
| PGSC0003DMT400052833 | Potato | cytosol | 15.35 | 21.82 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 16.88 | 21.57 |
| CDY09910 | Canola | nucleus | 17.65 | 21.56 |
| PGSC0003DMT400090939 | Potato | cytosol | 16.62 | 21.45 |
| AT4G03630.1 | Thale cress | cytosol | 12.02 | 21.36 |
| CDY06267 | Canola | nucleus | 18.93 | 21.26 |
| Solyc08g006940.2.1 | Tomato | cytosol | 16.88 | 21.22 |
| AT5G52480.1 | Thale cress | cytosol | 13.04 | 21.16 |
| AT4G05475.1 | Thale cress | cytosol | 16.62 | 21.04 |
| PGSC0003DMT400015035 | Potato | cytosol | 16.37 | 20.91 |
| Bra031582.1-P | Field mustard | nucleus | 18.67 | 20.86 |
| CDY10283 | Canola | cytosol | 16.62 | 20.7 |
| Bra000817.1-P | Field mustard | plastid | 9.46 | 20.56 |
| Solyc08g013800.2.1 | Tomato | cytosol | 15.09 | 20.07 |
| PGSC0003DMT400015030 | Potato | cytosol | 14.58 | 19.26 |
| TraesCS6A01G051000.1 | Wheat | plastid | 18.16 | 19.09 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 11.25 | 18.88 |
| PGSC0003DMT400054358 | Potato | cytosol | 16.37 | 18.88 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 16.88 | 18.7 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 15.35 | 17.6 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 19.18 | 17.36 |
| Solyc08g013820.2.1 | Tomato | cytosol | 16.37 | 17.2 |
| Bra000723.1-P | Field mustard | cytosol | 6.14 | 15.79 |
| CDY22112 | Canola | cytosol | 17.14 | 13.9 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 10.49 | 13.53 |
| Solyc08g013780.1.1 | Tomato | cytosol | 4.09 | 13.01 |
| Bra034194.1-P | Field mustard | cytosol | 17.39 | 12.71 |
| CDY21983 | Canola | cytosol | 8.95 | 12.37 |
| CDY09154 | Canola | plastid | 17.9 | 12.35 |
| CDY21989 | Canola | cytosol | 2.56 | 12.35 |
| Bra020205.1-P | Field mustard | plastid | 17.9 | 12.35 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G417500.1 | EnsemblPlantsGene:TraesCS3A01G417500 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR44078 | PFAM:PF00646 | PFscan:PS50181 | SEG:seg | SUPFAM:SSF81383 | MapMan:35.1 |
Description
No Description!
Coordinates
chr3A:-:659800835..659803677
Molecular Weight (calculated)
43722.4 Da
IEP (calculated)
5.133
GRAVY (calculated)
-0.245
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPSASPSG DGGSRVSGSP TAGGIGEERD VFLPVADISR SWISAWLERP LFLAGDASVL CMESGESDRC KRARREATAG NDLLPEMAKQ GFQAHPHKNR
101: SELPCTMEVV EPNPLPVSDV RDWSELPLDA LSAIFMKLGT IEILMHAELV CCSWRITAKS PELWRFVDMT RHKVVFSKAE NVLCEMAKVA IDRSEGRMES
201: FWAQKFVTSE LLNYIASRCN SLKSIRLIAS QYFWDDGVTK LAARCPILEE IEYSGQKLSW PFFKRIGAAR PELKRLRVRL PWVDEEEEEE LYEAWEARQN
301: EEAFAIAESL QELQLLQMAG YGLTEKGVYA ILKAAPTSNS STLENATTLK LTMNSELAVP ISGMPGCQEW WGLRLTLSAQ ISIPSRRTKV K
101: SELPCTMEVV EPNPLPVSDV RDWSELPLDA LSAIFMKLGT IEILMHAELV CCSWRITAKS PELWRFVDMT RHKVVFSKAE NVLCEMAKVA IDRSEGRMES
201: FWAQKFVTSE LLNYIASRCN SLKSIRLIAS QYFWDDGVTK LAARCPILEE IEYSGQKLSW PFFKRIGAAR PELKRLRVRL PWVDEEEEEE LYEAWEARQN
301: EEAFAIAESL QELQLLQMAG YGLTEKGVYA ILKAAPTSNS STLENATTLK LTMNSELAVP ISGMPGCQEW WGLRLTLSAQ ISIPSRRTKV K
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.