Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | KRG96405 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | KRH68142 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH21099 | Soybean | cytosol | 85.22 | 87.14 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 55.03 | 54.52 |
| CDY21989 | Canola | cytosol | 12.58 | 49.38 |
| AT4G03630.1 | Thale cress | cytosol | 33.02 | 47.73 |
| AT4G05460.1 | Thale cress | cytosol | 44.65 | 47.02 |
| Solyc08g006940.2.1 | Tomato | cytosol | 45.91 | 46.95 |
| PGSC0003DMT400090939 | Potato | cytosol | 44.65 | 46.86 |
| Bra000817.1-P | Field mustard | plastid | 26.42 | 46.67 |
| Bra034226.1-P | Field mustard | cytosol | 42.14 | 46.53 |
| Bra034230.1-P | Field mustard | cytosol | 38.36 | 46.39 |
| Bra030690.1-P | Field mustard | cytosol | 40.88 | 46.26 |
| CDY15618 | Canola | cytosol | 40.88 | 46.26 |
| CDY48578 | Canola | cytosol | 36.16 | 45.82 |
| CDX86473 | Canola | cytosol | 36.79 | 45.7 |
| CDX73787 | Canola | cytosol | 36.48 | 45.31 |
| CDX99649 | Canola | cytosol | 33.02 | 45.06 |
| CDY21333 | Canola | nucleus, plastid | 41.51 | 44.9 |
| CDY48580 | Canola | cytosol | 43.08 | 44.63 |
| CDY48574 | Canola | cytosol | 41.51 | 44.3 |
| Bra030342.1-P | Field mustard | cytosol | 32.39 | 44.21 |
| CDY15937 | Canola | cytosol | 32.39 | 44.21 |
| Bra000723.1-P | Field mustard | cytosol | 21.07 | 44.08 |
| CDY09910 | Canola | nucleus | 44.34 | 44.06 |
| CDX90789 | Canola | cytosol | 41.51 | 43.85 |
| PGSC0003DMT400058969 | Potato | cytosol | 12.26 | 43.82 |
| CDY59275 | Canola | plastid | 43.71 | 43.3 |
| Solyc08g013780.1.1 | Tomato | cytosol | 16.67 | 43.09 |
| CDY21988 | Canola | cytosol | 20.13 | 42.38 |
| AT4G05497.1 | Thale cress | plastid | 32.7 | 42.28 |
| Bra000816.1-P | Field mustard | plastid | 43.08 | 42.15 |
| Bra034229.1-P | Field mustard | cytosol | 36.48 | 42.03 |
| CDY06267 | Canola | nucleus | 45.91 | 41.95 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 33.96 | 41.7 |
| AT5G52480.1 | Thale cress | cytosol | 31.45 | 41.49 |
| Bra031582.1-P | Field mustard | nucleus | 45.28 | 41.14 |
| CDY48576 | Canola | cytosol | 38.05 | 40.74 |
| Bra034227.1-P | Field mustard | plastid | 40.57 | 40.57 |
| CDY62000 | Canola | plastid | 41.82 | 40.43 |
| CDY10283 | Canola | cytosol | 39.62 | 40.13 |
| CDY48575 | Canola | plastid | 39.94 | 40.06 |
| Bra034228.1-P | Field mustard | cytosol | 37.11 | 39.73 |
| CDY48577 | Canola | cytosol | 35.22 | 39.72 |
| CDX77948 | Canola | cytosol | 21.07 | 39.65 |
| PGSC0003DMT400052833 | Potato | cytosol | 34.28 | 39.64 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 37.74 | 39.22 |
| CDY21986 | Canola | cytosol, plastid | 36.79 | 39.0 |
| AT4G05475.1 | Thale cress | cytosol | 37.74 | 38.84 |
| AT4G05490.1 | Thale cress | plastid | 37.42 | 38.76 |
| PGSC0003DMT400015035 | Potato | cytosol | 37.11 | 38.56 |
| Solyc08g013800.2.1 | Tomato | cytosol | 35.53 | 38.44 |
| PGSC0003DMT400016134 | Potato | cytosol | 34.91 | 38.28 |
| PGSC0003DMT400015030 | Potato | cytosol | 34.59 | 37.16 |
| PGSC0003DMT400054358 | Potato | cytosol | 38.99 | 36.58 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 29.56 | 35.21 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 18.87 | 34.88 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 18.87 | 34.88 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 27.99 | 34.5 |
| Os08t0193200-00 | Rice | cytosol | 12.26 | 33.91 |
| CDY21990 | Canola | cytosol | 20.13 | 33.33 |
| Zm00001d010914_P001 | Maize | cytosol | 34.28 | 33.33 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 34.28 | 33.23 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 17.3 | 33.13 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 31.76 | 33.01 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 33.33 | 32.72 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 33.33 | 32.72 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 31.45 | 32.68 |
| Os02t0317300-01 | Rice | cytosol | 33.65 | 32.62 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 30.19 | 32.54 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 20.75 | 32.51 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 20.75 | 32.51 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 33.33 | 32.32 |
| EES17669 | Sorghum | cytosol | 33.65 | 32.23 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 32.7 | 32.1 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 10.69 | 32.08 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 29.25 | 31.96 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 29.25 | 31.96 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 33.02 | 31.82 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 31.76 | 31.56 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 20.13 | 31.53 |
| Os02t0317500-01 | Rice | cytosol | 32.39 | 31.21 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 19.81 | 31.19 |
| Zm00001d024252_P001 | Maize | cytosol | 25.79 | 31.06 |
| Zm00001d024265_P001 | Maize | cytosol | 29.25 | 31.0 |
| EES14679 | Sorghum | nucleus | 33.33 | 30.81 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 29.25 | 30.79 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 19.81 | 30.73 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 29.56 | 30.72 |
| Solyc08g013820.2.1 | Tomato | cytosol | 35.85 | 30.65 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 10.06 | 30.48 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 29.56 | 30.42 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 9.43 | 30.3 |
| KXG24675 | Sorghum | cytosol | 27.36 | 30.21 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 32.7 | 30.14 |
| TraesCS2D01G159000.1 | Wheat | plastid | 29.25 | 30.1 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 32.08 | 30.09 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 32.7 | 30.06 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 32.39 | 29.77 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 32.7 | 29.71 |
| Os08t0193500-00 | Rice | cytosol | 20.44 | 29.68 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 21.7 | 29.61 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 27.99 | 29.57 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 28.62 | 29.55 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 28.62 | 29.55 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 32.08 | 29.48 |
| TraesCS2B01G178700.1 | Wheat | plastid | 28.62 | 29.45 |
| Os11t0637300-00 | Rice | cytosol | 11.01 | 29.17 |
| OQU80176 | Sorghum | mitochondrion | 20.44 | 29.15 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 32.08 | 29.14 |
| Zm00001d024764_P001 | Maize | cytosol | 32.7 | 29.13 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 28.3 | 29.03 |
| KXG24670 | Sorghum | cytosol | 28.93 | 29.02 |
| Os08t0194350-00 | Rice | cytosol | 24.21 | 28.95 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 28.3 | 28.94 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 28.62 | 28.8 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 28.93 | 28.66 |
| CDY21983 | Canola | cytosol | 25.47 | 28.62 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 30.5 | 28.61 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 31.45 | 28.57 |
| Zm00001d046526_P001 | Maize | plastid | 25.16 | 28.27 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 28.62 | 28.17 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 30.19 | 28.15 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 27.67 | 28.11 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 19.5 | 27.93 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 30.19 | 27.59 |
| Os08t0193900-01 | Rice | nucleus | 34.28 | 27.53 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 27.04 | 27.48 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 28.93 | 27.46 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 17.92 | 27.4 |
| OQU80048 | Sorghum | cytosol | 24.53 | 27.37 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 10.06 | 27.12 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 27.99 | 26.97 |
| TraesCS6B01G067700.1 | Wheat | plastid | 22.64 | 26.87 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 18.87 | 26.79 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 18.55 | 26.34 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 17.61 | 26.29 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 26.1 | 26.1 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 24.84 | 26.07 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 22.96 | 25.98 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 15.72 | 25.91 |
| TraesCS7D01G203500.1 | Wheat | plastid | 27.04 | 25.29 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 27.04 | 25.0 |
| TraesCS7D01G203600.1 | Wheat | plastid | 26.73 | 24.93 |
| Os08t0193300-00 | Rice | cytosol | 25.47 | 24.32 |
| Bra034194.1-P | Field mustard | cytosol | 40.88 | 24.3 |
| Bra020205.1-P | Field mustard | plastid | 43.08 | 24.16 |
| CDY09154 | Canola | plastid | 43.08 | 24.16 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 26.1 | 24.13 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 26.73 | 24.01 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 26.42 | 24.0 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 10.69 | 23.94 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 26.42 | 23.8 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 31.45 | 23.15 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 24.53 | 22.87 |
| TraesCS6B01G310200.1 | Wheat | plastid | 25.79 | 22.71 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 17.3 | 22.63 |
| HORVU2Hr1G077990.2 | Barley | plastid | 26.42 | 22.46 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 33.02 | 22.34 |
| CDY22112 | Canola | cytosol | 33.33 | 21.99 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 32.7 | 21.94 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 30.5 | 21.8 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 32.08 | 21.79 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 23.58 | 21.74 |
| TraesCS3B01G452300.1 | Wheat | plastid | 31.45 | 21.51 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 29.56 | 21.46 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 31.76 | 21.35 |
| TraesCS6A01G051000.1 | Wheat | plastid | 24.53 | 20.97 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 17.3 | 20.37 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 24.84 | 19.95 |
| Os08t0191300-00 | Rice | cytosol, golgi | 16.04 | 19.84 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 30.82 | 19.76 |
| OQU80174 | Sorghum | cytosol | 8.18 | 19.4 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 23.58 | 19.18 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 17.92 | 18.87 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 14.15 | 18.0 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 15.72 | 16.72 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 19.18 | 16.44 |
| Os08t0196200-01 | Rice | cytosol | 7.55 | 8.76 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.94 | 0.79 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:100801218 | Gene3D:3.80.10.10 | MapMan:35.1 | EMBL:ACUP02009184 | InterPro:F-box_dom |
| EnsemblPlantsGene:GLYMA_15G092200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | UniProt:I1MF12 | InterPro:IPR001611 |
| InterPro:IPR001810 | InterPro:IPR032675 | EnsemblPlants:KRH11147 | ProteinID:KRH11147 | ProteinID:KRH11147.1 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF12937 | PFAM:PF13516 | PFscan:PS50181 | PANTHER:PTHR44078 |
| PANTHER:PTHR44078:SF5 | SMART:SM00367 | SUPFAM:SSF52047 | UniParc:UPI000233B008 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr15:+:7099027..7102226
Molecular Weight (calculated)
36213.4 Da
IEP (calculated)
4.272
GRAVY (calculated)
-0.318
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MSWSSTQEAV VADCEEERNW LDLPRDVVCT IFQKLGAIEI LTRAQRVCSV WRGISKEPLL WRTIDMRNSG DIETNFVFLA MCHRAIDYSS GHLLHINIEY
101: FATDDLLRHI THSTSNLRSL RLACCYQISD EGLCEIAKEL PQLEELDISI SSFNPTRDPL EAVGRCCRHL KTLKFNMKGY RRPHIECDEE AFAIAETMPT
201: LHHLQLFGNK LTNEGLLAIL DGCPHLESLD LRQCFNVNLA GSLGKRCAEQ IKELRLPCDP TDDCPFEADV DYGSLDEDSS AISDIDFLSD DDYDYYEFSG
301: GSDFSDYDFD SDPDYYGL
101: FATDDLLRHI THSTSNLRSL RLACCYQISD EGLCEIAKEL PQLEELDISI SSFNPTRDPL EAVGRCCRHL KTLKFNMKGY RRPHIECDEE AFAIAETMPT
201: LHHLQLFGNK LTNEGLLAIL DGCPHLESLD LRQCFNVNLA GSLGKRCAEQ IKELRLPCDP TDDCPFEADV DYGSLDEDSS AISDIDFLSD DDYDYYEFSG
301: GSDFSDYDFD SDPDYYGL
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.