Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0935300-02 | |
| Os05t0193900-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | Os01t0935300-02 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | Os05t0193900-00 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU80174 | Sorghum | cytosol | 17.55 | 39.55 |
| Os11t0637300-00 | Rice | cytosol | 15.56 | 39.17 |
| Os08t0193200-00 | Rice | cytosol | 14.9 | 39.13 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 17.22 | 36.62 |
| CDY21988 | Canola | cytosol | 15.23 | 30.46 |
| CDX77948 | Canola | cytosol | 16.23 | 28.99 |
| CDY21990 | Canola | cytosol | 16.56 | 26.04 |
| Os08t0193500-00 | Rice | cytosol | 18.21 | 25.11 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 20.53 | 24.8 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 28.15 | 24.57 |
| Os08t0193900-01 | Rice | nucleus | 32.12 | 24.49 |
| Os08t0194350-00 | Rice | cytosol | 20.86 | 23.68 |
| Os02t0317300-01 | Rice | cytosol | 25.5 | 23.48 |
| Bra034230.1-P | Field mustard | cytosol | 19.87 | 22.81 |
| Os02t0317500-01 | Rice | cytosol | 24.83 | 22.73 |
| CDY48578 | Canola | cytosol | 18.87 | 22.71 |
| Bra030342.1-P | Field mustard | cytosol | 16.89 | 21.89 |
| Bra034226.1-P | Field mustard | cytosol | 20.86 | 21.88 |
| CDX73787 | Canola | cytosol | 18.21 | 21.48 |
| CDY15937 | Canola | cytosol | 16.56 | 21.46 |
| CDX99649 | Canola | cytosol | 16.56 | 21.46 |
| CDY48580 | Canola | cytosol | 21.19 | 20.85 |
| CDY48575 | Canola | plastid | 21.85 | 20.82 |
| Bra034227.1-P | Field mustard | plastid | 21.85 | 20.75 |
| Bra034229.1-P | Field mustard | cytosol | 18.87 | 20.65 |
| CDY48574 | Canola | cytosol | 19.87 | 20.13 |
| CDY48577 | Canola | cytosol | 18.54 | 19.86 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 16.89 | 19.69 |
| CDX90789 | Canola | cytosol | 19.54 | 19.6 |
| CDY21333 | Canola | nucleus, plastid | 18.87 | 19.39 |
| CDY21986 | Canola | cytosol, plastid | 19.21 | 19.33 |
| CDY59275 | Canola | plastid | 20.53 | 19.31 |
| AT4G05460.1 | Thale cress | cytosol | 19.21 | 19.21 |
| AT4G05497.1 | Thale cress | plastid | 15.56 | 19.11 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 20.2 | 19.0 |
| CDY62000 | Canola | plastid | 20.53 | 18.84 |
| KRH21099 | Soybean | cytosol | 19.21 | 18.65 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 18.87 | 18.63 |
| PGSC0003DMT400054358 | Potato | cytosol | 20.53 | 18.29 |
| AT4G05490.1 | Thale cress | plastid | 18.54 | 18.24 |
| CDY48576 | Canola | cytosol | 17.88 | 18.18 |
| CDY15618 | Canola | cytosol | 16.89 | 18.15 |
| Bra030690.1-P | Field mustard | cytosol | 16.89 | 18.15 |
| KRH11147 | Soybean | cytosol | 18.87 | 17.92 |
| CDY09910 | Canola | nucleus | 18.87 | 17.81 |
| PGSC0003DMT400015035 | Potato | cytosol | 17.88 | 17.65 |
| PGSC0003DMT400016134 | Potato | cytosol | 16.89 | 17.59 |
| CDX86473 | Canola | cytosol | 14.9 | 17.58 |
| Bra034228.1-P | Field mustard | cytosol | 17.22 | 17.51 |
| AT4G03630.1 | Thale cress | cytosol | 12.58 | 17.27 |
| CDY10283 | Canola | cytosol | 17.88 | 17.2 |
| Solyc08g013800.2.1 | Tomato | cytosol | 16.56 | 17.01 |
| Bra000816.1-P | Field mustard | plastid | 18.21 | 16.92 |
| PGSC0003DMT400090939 | Potato | cytosol | 16.89 | 16.83 |
| Os08t0196200-01 | Rice | cytosol | 15.23 | 16.79 |
| Solyc08g006940.2.1 | Tomato | cytosol | 17.22 | 16.72 |
| Bra000817.1-P | Field mustard | plastid | 9.93 | 16.67 |
| AT4G05475.1 | Thale cress | cytosol | 16.56 | 16.18 |
| CDY06267 | Canola | nucleus | 18.54 | 16.09 |
| PGSC0003DMT400052833 | Potato | cytosol | 14.57 | 16.0 |
| Bra031582.1-P | Field mustard | nucleus | 18.21 | 15.71 |
| PGSC0003DMT400015030 | Potato | cytosol | 13.58 | 13.85 |
| Os08t0193300-00 | Rice | cytosol | 15.23 | 13.81 |
| CDY21989 | Canola | cytosol | 3.64 | 13.58 |
| Solyc08g013820.2.1 | Tomato | cytosol | 16.56 | 13.44 |
| AT5G52480.1 | Thale cress | cytosol | 10.26 | 12.86 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 11.92 | 11.88 |
| Bra000723.1-P | Field mustard | cytosol | 5.96 | 11.84 |
| Os08t0191300-00 | Rice | cytosol, golgi | 9.6 | 11.28 |
| CDY09154 | Canola | plastid | 20.53 | 10.93 |
| Bra020205.1-P | Field mustard | plastid | 20.53 | 10.93 |
| Bra034194.1-P | Field mustard | cytosol | 19.21 | 10.84 |
| CDY22112 | Canola | cytosol | 16.89 | 10.58 |
| PGSC0003DMT400058969 | Potato | cytosol | 2.65 | 8.99 |
| CDY21983 | Canola | cytosol | 7.95 | 8.48 |
| Solyc08g013780.1.1 | Tomato | cytosol | 3.31 | 8.13 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 1.66 | 1.32 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:107275742 | Gene3D:3.80.10.10 | MapMan:35.2 | ProteinID:BAD03410.1 | ProteinID:BAD03685.1 |
| ProteinID:BAT04214.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | EnsemblPlantsGene:Os08g0195900 | EnsemblPlants:Os08t0195900-00 | PFAM:PF12937 |
| PFscan:PS50181 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF6 | UniProt:Q6Z071 | SUPFAM:SSF81383 | TMHMM:TMhelix |
| UniParc:UPI00002260E4 | RefSeq:XP_015649210.1 | SEG:seg | : | : | : |
Description
F-box protein 418F-box domain, cyclin-like domain containing protein. (Os08t0195900-00)
Coordinates
chr8:-:5576467..5578655
Molecular Weight (calculated)
35549.7 Da
IEP (calculated)
5.878
GRAVY (calculated)
-0.780
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPSRRRRR RRRRQRRRTR TVPLGVFLYH TTLPAARDWA ELPVDAILQV FRWLDHVDIL MGAGLACQSW RAAARDEPAL WRRIDMRGFA CLPYWQRHRR
101: DTVRAMAREA VRRSDGRCEE FWSKVGGDDE VLQFLADHAP YLRSIRLVKC DHVSKEGISA IIQSCPLLEA LYIDSDCILR RDIDALRDTN KLRETNRALS
201: IQIRSHGEEE EADRAQNGKD EEADTDYGDD EFTGDLSPWS SICFEQDRDD GLDEFLKSEY FLEPHRYLHD VHVNEFDEEQ DCRMLDKGDR RYLKAEGWTY
301: VE
101: DTVRAMAREA VRRSDGRCEE FWSKVGGDDE VLQFLADHAP YLRSIRLVKC DHVSKEGISA IIQSCPLLEA LYIDSDCILR RDIDALRDTN KLRETNRALS
201: IQIRSHGEEE EADRAQNGKD EEADTDYGDD EFTGDLSPWS SICFEQDRDD GLDEFLKSEY FLEPHRYLHD VHVNEFDEEQ DCRMLDKGDR RYLKAEGWTY
301: VE
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.