Factsheet for PGSC0003DMT400016134

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	PGSC0003DMT400063662	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052833	Potato	cytosol	71.72	75.64
PGSC0003DMT400058969	Potato	cytosol	14.48	47.19
Bra030342.1-P	Field mustard	cytosol	37.59	46.78
CDY21988	Canola	cytosol	24.14	46.36
CDY15937	Canola	cytosol	36.9	45.92
CDX99649	Canola	cytosol	36.55	45.49
Bra034230.1-P	Field mustard	cytosol	39.66	43.73
CDY48578	Canola	cytosol	37.59	43.43
CDX90789	Canola	cytosol	43.45	41.86
PGSC0003DMT400090939	Potato	cytosol	43.45	41.58
AT4G05460.1	Thale cress	cytosol	43.1	41.39
CDY21333	Canola	nucleus, plastid	41.72	41.16
CDX73787	Canola	cytosol	36.21	41.02
Bra034226.1-P	Field mustard	cytosol	40.69	40.97
Bra034229.1-P	Field mustard	cytosol	38.97	40.94
Bra000723.1-P	Field mustard	cytosol	21.03	40.13
CDX77948	Canola	cytosol	23.1	39.65
CDY21989	Canola	cytosol	11.03	39.51
CDY48575	Canola	plastid	43.1	39.43
Bra034227.1-P	Field mustard	plastid	43.1	39.31
PGSC0003DMT400015035	Potato	cytosol	41.38	39.22
PGSC0003DMT400015030	Potato	cytosol	40.0	39.19
AT4G05497.1	Thale cress	plastid	33.1	39.02
CDY48574	Canola	cytosol	40.0	38.93
Bra030690.1-P	Field mustard	cytosol	37.59	38.79
CDY15618	Canola	cytosol	37.59	38.79
CDX86473	Canola	cytosol	34.14	38.67
AT4G03630.1	Thale cress	cytosol	29.31	38.64
CDY09910	Canola	nucleus	42.41	38.44
CDY48580	Canola	cytosol	40.34	38.11
CDY48577	Canola	cytosol	36.9	37.94
VIT_10s0003g04300.t01	Wine grape	cytosol	41.72	37.69
Bra034231.1-P	Field mustard	cytosol, plastid	33.45	37.45
CDY48576	Canola	cytosol	38.28	37.37
CDY59275	Canola	plastid	41.03	37.07
CDY06267	Canola	nucleus	44.48	37.07
Bra031582.1-P	Field mustard	nucleus	44.48	36.86
CDY21986	Canola	cytosol, plastid	37.93	36.67
AT4G05490.1	Thale cress	plastid	38.62	36.48
Bra034228.1-P	Field mustard	cytosol	37.24	36.36
CDY10283	Canola	cytosol	39.31	36.31
Bra000817.1-P	Field mustard	plastid	22.41	36.11
KRH21099	Soybean	cytosol	38.62	36.01
PGSC0003DMT400054358	Potato	cytosol	41.72	35.69
CDY62000	Canola	plastid	40.34	35.56
Bra000816.1-P	Field mustard	plastid	39.31	35.08
KRH11147	Soybean	cytosol	38.28	34.91
CDY21990	Canola	cytosol	22.76	34.38
TraesCS5B01G081700.1	Wheat	cytosol	19.66	34.34
TraesCS5B01G466500.1	Wheat	extracellular	12.41	34.29
AT4G05470.1	Thale cress	cytosol, plastid	35.86	33.99
AT4G05475.1	Thale cress	cytosol	35.86	33.66
TraesCS3B01G443100.1	Wheat	cytosol	29.66	33.33
AT5G52480.1	Thale cress	cytosol	26.9	32.37
TraesCS7A01G304900.1	Wheat	mitochondrion, nucleus	29.66	32.21
TraesCS5B01G484500.1	Wheat	cytosol	22.41	31.71
TraesCS5D01G468200.1	Wheat	cytosol, plasma membrane, plastid	22.07	31.68
TraesCS5D01G484300.1	Wheat	cytosol	22.07	31.53
Zm00001d024252_P001	Maize	cytosol	28.62	31.44
TraesCS7A01G484100.1	Wheat	cytosol	10.69	31.31
KXG24675	Sorghum	cytosol	31.03	31.25
TraesCS5D01G088900.1	Wheat	cytosol	32.41	30.72
Zm00001d010914_P001	Maize	cytosol	34.48	30.58
Os02t0317300-01	Rice	cytosol	34.48	30.49
TraesCS5A01G075400.1	Wheat	cytosol	32.07	30.39
TraesCS5A01G471800.1	Wheat	cytosol	21.03	30.05
EES17669	Sorghum	cytosol	34.14	29.82
Os08t0193200-00	Rice	cytosol	11.72	29.57
TraesCS5B01G484300.1	Wheat	cytosol	20.69	29.56
HORVU2Hr1G027710.1	Barley	cytosol	29.66	29.55
TraesCS5B01G484600.1	Wheat	cytosol	21.03	29.33
HORVU1Hr1G004970.3	Barley	cytosol	32.76	29.32
TraesCS1D01G034100.1	Wheat	cytosol	33.1	29.27
TraesCS4B01G183700.1	Wheat	cytosol	29.66	29.15
TraesCS1A01G033100.1	Wheat	cytosol	32.76	28.96
TraesCS4B01G183800.1	Wheat	cytosol	30.34	28.76
Os02t0317500-01	Rice	cytosol	32.41	28.48
TraesCS1B01G041200.1	Wheat	cytosol	32.41	28.48
HORVU2Hr1G027770.2	Barley	mitochondrion	29.66	28.48
HORVU0Hr1G019800.1	Barley	cytosol	30.0	28.06
TraesCS5D01G100900.1	Wheat	endoplasmic reticulum	16.55	27.91
TraesCS2A01G153600.1	Wheat	cytosol, plastid	29.66	27.83
Os08t0194350-00	Rice	cytosol	25.52	27.82
TraesCS7B01G098400.1	Wheat	cytosol	29.31	27.6
TraesCS3B01G443800.1	Wheat	nucleus	32.76	27.54
Os11t0637300-00	Rice	cytosol	11.38	27.5
TraesCS2D01G070200.1	Wheat	cytosol	30.69	27.47
KXG24670	Sorghum	cytosol	30.0	27.44
HORVU5Hr1G020150.1	Barley	mitochondrion	32.07	27.43
TraesCS3A01G410700.1	Wheat	mitochondrion	33.1	27.43
TraesCS3B01G444000.1	Wheat	nucleus	33.1	27.43
TraesCS2A01G071400.1	Wheat	cytosol	10.0	27.36
TraesCS5B01G094800.1	Wheat	endoplasmic reticulum	16.21	27.33
TraesCS7A01G193100.1	Wheat	cytosol	28.97	27.27
TraesCS2B01G178700.1	Wheat	plastid	28.97	27.18
HORVU2Hr1G020470.1	Barley	mitochondrion	11.03	27.12
TraesCS7D01G194400.1	Wheat	extracellular	29.31	26.9
TraesCS2D01G159000.1	Wheat	plastid	28.62	26.86
TraesCS1D01G126200.1	Wheat	nucleus	26.9	26.8
TraesCS7B01G205200.1	Wheat	mitochondrion	31.72	26.59
TraesCS3D01G405300.1	Wheat	nucleus	32.07	26.57
TraesCS3A01G411000.1	Wheat	nucleus	31.03	26.55
EES14679	Sorghum	nucleus	31.38	26.45
TraesCS7D01G300400.1	Wheat	mitochondrion, nucleus	31.38	26.3
TraesCS1A01G128000.1	Wheat	cytosol	21.03	26.18
Zm00001d024764_P001	Maize	cytosol	32.07	26.05
TraesCS7B01G287400.1	Wheat	cytosol	28.97	26.01
TraesCS2B01G085400.1	Wheat	cytosol	28.62	25.94
TraesCS2B01G085200.1	Wheat	cytosol	28.97	25.93
TraesCS7D01G194300.1	Wheat	cytosol	26.9	25.91
TraesCS5B01G484200.1	Wheat	cytosol, peroxisome, plastid	17.24	25.91
TraesCS2B01G385500.1	Wheat	cytosol, plasma membrane, plastid	20.0	25.89
TraesCS5B01G484100.1	Wheat	cytosol	20.0	25.89
Os08t0195800-00	Rice	cytosol, mitochondrion, nucleus	30.69	25.72
TraesCS2A01G313400.1	Wheat	cytosol	27.24	25.4
TraesCS7D01G381100.1	Wheat	mitochondrion	29.66	25.22
TraesCS7B01G480000.1	Wheat	cytosol	27.59	24.92
TraesCS2B01G332200.1	Wheat	cytosol	26.9	24.92
Os08t0193500-00	Rice	cytosol	18.62	24.66
TraesCS2D01G311900.1	Wheat	cytosol	26.55	24.6
TraesCS4D01G274100.1	Wheat	cytosol	11.72	23.94
OQU80174	Sorghum	cytosol	11.03	23.88
TraesCS7D01G555100.1	Wheat	cytosol	27.59	23.88
TraesCS3D01G413100.1	Wheat	cytosol, endoplasmic reticulum, vacuole	28.62	23.85
TraesCS7D01G203600.1	Wheat	plastid	27.93	23.75
Os08t0193900-01	Rice	nucleus	32.41	23.74
Zm00001d024265_P001	Maize	cytosol	24.48	23.67
Zm00001d046526_P001	Maize	plastid	22.76	23.32
OQU80176	Sorghum	mitochondrion	17.93	23.32
TraesCS7D01G203500.1	Wheat	plastid	27.24	23.24
TraesCS6B01G067700.1	Wheat	plastid	21.38	23.13
TraesCS3B01G452600.1	Wheat	extracellular	26.21	23.03
HORVU2Hr1G020540.2	Barley	cytosol	22.07	22.78
TraesCS2D01G011000.1	Wheat	cytosol	24.83	22.64
Bra034194.1-P	Field mustard	cytosol	41.03	22.24
CDY22112	Canola	cytosol	36.21	21.78
OQU80048	Sorghum	cytosol	21.38	21.75
TraesCS5B01G284300.1	Wheat	cytosol	25.52	21.51
TraesCS2A01G119000.1	Wheat	nucleus	31.72	21.3
TraesCS6A01G090000.1	Wheat	mitochondrion	25.86	21.25
HORVU2Hr1G077990.2	Barley	plastid	27.24	21.12
TraesCS5D01G292400.1	Wheat	cytosol	24.83	20.93
TraesCSU01G016500.1	Wheat	mitochondrion	25.52	20.9
TraesCS6B01G112100.1	Wheat	mitochondrion	25.17	20.86
CDY21983	Canola	cytosol	20.34	20.85
Bra020205.1-P	Field mustard	plastid	40.34	20.63
CDY09154	Canola	plastid	40.34	20.63
Zm00001d046527_P001	Maize	extracellular, mitochondrion, nucleus	15.52	20.27
Os08t0193300-00	Rice	cytosol	23.1	20.12
Os08t0195000-00	Rice	cytosol, peroxisome, plastid	17.24	20.0
HORVU6Hr1G014660.1	Barley	cytosol	14.48	19.72
TraesCS6B01G310200.1	Wheat	plastid	24.14	19.39
EES14677	Sorghum	cytosol, mitochondrion, nucleus, plastid	31.38	19.36
TraesCS3B01G452300.1	Wheat	plastid	30.34	18.92
TraesCS6A01G089600.1	Wheat	cytosol, mitochondrion	22.07	18.77
TraesCS3B01G452500.1	Wheat	cytosol	30.34	18.6
TraesCS3D01G413000.1	Wheat	cytosol	27.93	18.49
TraesCS3D01G412900.1	Wheat	cytosol, plastid	29.66	18.38
HORVU3Hr1G092720.1	Barley	cytosol, mitochondrion, nucleus	30.0	18.35
Os08t0191300-00	Rice	cytosol, golgi	16.21	18.29
TraesCS6B01G112000.1	Wheat	mitochondrion	21.72	18.26
TraesCS3B01G452400.1	Wheat	cytosol	27.93	18.2
TraesCS3A01G417500.1	Wheat	cytosol	24.48	18.16
HORVU6Hr1G070690.2	Barley	extracellular, mitochondrion, plasma membrane	18.62	18.06
TraesCS6B01G067500.1	Wheat	cytosol, extracellular	14.83	17.7
TraesCS3A01G417400.1	Wheat	cytosol	30.0	17.54
HORVU6Hr1G070700.2	Barley	mitochondrion	23.79	17.42
TraesCS6A01G051000.1	Wheat	plastid	21.72	16.94
Os08t0195900-00	Rice	cytosol, mitochondrion, nucleus, plastid	17.59	16.89
TraesCS5D01G484100.1	Wheat	cytosol	20.34	15.9
TraesCSU01G016600.1	Wheat	mitochondrion	14.48	15.56
Os08t0196200-01	Rice	cytosol	9.31	9.85
Os08t0194000-00	Rice	cytosol, vacuole	1.03	0.79

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102583242	Gene3D:3.80.10.10	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M1A760	PFAM:PF12937	PFAM:PF13516
EnsemblPlantsGene:PGSC0003DMG402006305	PGSC:PGSC0003DMG402006305	EnsemblPlants:PGSC0003DMT400016134	PFscan:PS50181	PANTHER:PTHR44078	PANTHER:PTHR44078:SF5
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002959831	RefSeq:XP_006339378.1	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG402006305]

Coordinates

chr11:+:15298340..15300902

Molecular Weight (calculated)

33067.0 Da

IEP (calculated)

5.445

GRAVY (calculated)

-0.259

Length

290 amino acids

Sequence
(BLAST)

001: MNRKGKVKGK SNSQPMVKRP PWMELPEGIW ANILHRLGAV EILETAEKVC SKWRRVCKDP SMWRVIDMWN LGDLSDMDYD LEVMCRYAVD RSQGEVVDIN
101: LQYFATGQLL EYIAERSGKL KRLSIACCYG MVCESLVEVV QKFPLLEELS LTHTTITIEG IEALGRSCPR LKLFELNNSL YMGSGDYFDN EDVRNEEALA
201: IAKNLPTLHH LQLIGNRMTI KGVEAILDNC PHLVSLDLRL CKYVSLNKVL SNRISGRIKD LKHPHDSLAG LEFSFEACGE YDEDQMSDDY

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.