Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G183800.1 | Wheat | cytosol | 72.54 | 69.93 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 71.53 | 68.51 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 69.15 | 67.77 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 70.85 | 67.42 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 43.39 | 49.61 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 50.51 | 47.6 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 23.39 | 41.57 |
| Zm00001d024265_P001 | Maize | cytosol | 41.69 | 41.0 |
| CDY21989 | Canola | cytosol | 11.19 | 40.74 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 47.12 | 40.29 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 47.46 | 40.0 |
| PGSC0003DMT400058969 | Potato | cytosol | 11.53 | 38.2 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 41.36 | 37.77 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 44.07 | 37.57 |
| OQU80176 | Sorghum | mitochondrion | 28.14 | 37.22 |
| Bra000817.1-P | Field mustard | plastid | 22.37 | 36.67 |
| Solyc08g013780.1.1 | Tomato | cytosol | 14.92 | 35.77 |
| Bra030342.1-P | Field mustard | cytosol | 27.8 | 35.19 |
| CDX99649 | Canola | cytosol | 27.8 | 35.19 |
| CDY15937 | Canola | cytosol | 27.8 | 35.19 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 20.34 | 34.88 |
| AT4G03630.1 | Thale cress | cytosol | 25.76 | 34.55 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 38.64 | 34.55 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 12.2 | 34.29 |
| TraesCS2B01G178700.1 | Wheat | plastid | 35.25 | 33.66 |
| CDY48580 | Canola | cytosol | 34.92 | 33.55 |
| CDY48578 | Canola | cytosol | 28.47 | 33.47 |
| Bra034230.1-P | Field mustard | cytosol | 29.83 | 33.46 |
| CDX73787 | Canola | cytosol | 28.81 | 33.2 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 22.71 | 33.0 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 22.71 | 32.68 |
| TraesCS6B01G067700.1 | Wheat | plastid | 29.49 | 32.46 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 34.92 | 32.09 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 28.14 | 32.05 |
| Bra034227.1-P | Field mustard | plastid | 34.24 | 31.76 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 33.9 | 31.25 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 23.73 | 31.25 |
| CDY48575 | Canola | plastid | 33.56 | 31.23 |
| KRH21099 | Soybean | cytosol | 32.88 | 31.19 |
| Bra034229.1-P | Field mustard | cytosol | 29.15 | 31.16 |
| AT4G05460.1 | Thale cress | cytosol | 31.86 | 31.13 |
| PGSC0003DMT400015035 | Potato | cytosol | 32.2 | 31.05 |
| Bra034226.1-P | Field mustard | cytosol | 30.17 | 30.9 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 33.9 | 30.86 |
| Solyc08g013800.2.1 | Tomato | cytosol | 30.51 | 30.61 |
| CDY48574 | Canola | cytosol | 30.85 | 30.54 |
| CDX86473 | Canola | cytosol | 26.44 | 30.47 |
| Bra000723.1-P | Field mustard | cytosol | 15.59 | 30.26 |
| CDY15618 | Canola | cytosol | 28.81 | 30.25 |
| Bra030690.1-P | Field mustard | cytosol | 28.81 | 30.25 |
| CDX90789 | Canola | cytosol | 30.85 | 30.23 |
| TraesCS6B01G310200.1 | Wheat | plastid | 36.95 | 30.19 |
| KRH11147 | Soybean | cytosol | 32.54 | 30.19 |
| CDX77948 | Canola | cytosol | 17.29 | 30.18 |
| AT4G05490.1 | Thale cress | plastid | 31.19 | 29.97 |
| CDY21988 | Canola | cytosol | 15.25 | 29.8 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 30.85 | 29.74 |
| CDY21986 | Canola | cytosol, plastid | 30.17 | 29.67 |
| PGSC0003DMT400016134 | Potato | cytosol | 29.15 | 29.66 |
| CDY48576 | Canola | cytosol | 29.83 | 29.63 |
| CDY59275 | Canola | plastid | 32.2 | 29.59 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 31.86 | 29.28 |
| CDY21333 | Canola | nucleus, plastid | 29.15 | 29.25 |
| Bra034228.1-P | Field mustard | cytosol | 29.15 | 28.96 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 20.34 | 28.85 |
| AT4G05475.1 | Thale cress | cytosol | 30.17 | 28.8 |
| Solyc08g006940.2.1 | Tomato | cytosol | 30.17 | 28.62 |
| Bra000816.1-P | Field mustard | plastid | 31.53 | 28.62 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 21.69 | 28.57 |
| CDY62000 | Canola | plastid | 31.86 | 28.57 |
| AT4G05497.1 | Thale cress | plastid | 23.73 | 28.46 |
| CDY48577 | Canola | cytosol | 27.12 | 28.37 |
| AT5G52480.1 | Thale cress | cytosol | 23.05 | 28.22 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 32.88 | 28.12 |
| CDY21990 | Canola | cytosol | 17.97 | 27.6 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 32.54 | 27.43 |
| PGSC0003DMT400090939 | Potato | cytosol | 28.14 | 27.39 |
| CDY10283 | Canola | cytosol | 28.81 | 27.07 |
| PGSC0003DMT400015030 | Potato | cytosol | 26.78 | 26.69 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 29.83 | 26.67 |
| PGSC0003DMT400052833 | Potato | cytosol | 24.75 | 26.55 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 30.85 | 26.45 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 17.29 | 26.42 |
| CDY09910 | Canola | nucleus | 28.47 | 26.25 |
| PGSC0003DMT400054358 | Potato | cytosol | 29.83 | 25.96 |
| Solyc08g013820.2.1 | Tomato | cytosol | 31.53 | 25.0 |
| CDY06267 | Canola | nucleus | 29.15 | 24.71 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 20.34 | 24.69 |
| Bra031582.1-P | Field mustard | nucleus | 29.15 | 24.57 |
| TraesCS3B01G452300.1 | Wheat | plastid | 33.9 | 21.51 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 32.2 | 21.35 |
| CDY21983 | Canola | cytosol | 20.0 | 20.85 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 33.22 | 20.72 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 20.0 | 19.47 |
| Bra034194.1-P | Field mustard | cytosol | 30.85 | 17.01 |
| CDY09154 | Canola | plastid | 32.2 | 16.75 |
| Bra020205.1-P | Field mustard | plastid | 32.2 | 16.75 |
| CDY22112 | Canola | cytosol | 25.76 | 15.77 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt | PFAM:PF12937 | PFAM:PF13516 | PFscan:PS50181 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF3 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | EnsemblPlantsGene:TraesCS4B01G183700 | EnsemblPlants:TraesCS4B01G183700.1 | : | : |
Description
No Description!
Coordinates
chr4B:-:403035188..403036223
Molecular Weight (calculated)
33643.6 Da
IEP (calculated)
6.427
GRAVY (calculated)
-0.174
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAPSASCL LEEPVRLLHN GKDKEVVVRE ARDWAALPRD VLLDVFSRLD HVDILTGPDI VCSPWRRASV DEPDLWRCVD MRFHCYAFNH SEYLEMVRAA
101: MRRSVGRCEA FWAEGYVTER ILSLLADGRA PSLKSLRLIY CRDIVDMALK PLITKFSMLE ELELSNCLHK FPDTLEAVGA ACPLLKRFRL SQIFFYSEYQ
201: DDSAAMAIAK MPELRSLQLT ANSLTNNGLK AILDGCPHLE SLDIRHCYHV CMNGDMQAKC SRIKTLRHPE DSMDDYNLSF NYYTTPNHAG LHQLN
101: MRRSVGRCEA FWAEGYVTER ILSLLADGRA PSLKSLRLIY CRDIVDMALK PLITKFSMLE ELELSNCLHK FPDTLEAVGA ACPLLKRFRL SQIFFYSEYQ
201: DDSAAMAIAK MPELRSLQLT ANSLTNNGLK AILDGCPHLE SLDIRHCYHV CMNGDMQAKC SRIKTLRHPE DSMDDYNLSF NYYTTPNHAG LHQLN
001: MNNEDFNADE LLTFVAYRSS ILKRLGRMMC HAVALSQGGC VEINIEHFGT DSLLTYIADR SSNLRHLGLA KCDQITGMGL FTEAMKLPLL EDLELSYCLI
101: KGKNLEAIGF ACLHLKTLKL NCQGFKFPGF TYDHDALGIA KRMPELRCLQ LFGNRVSDVG LNAIFDGCPH LEHLDLRQCF NINLVGDLEK RCMERIKDLR
201: RPNDSTADYP YDTSLLDLGI
101: KGKNLEAIGF ACLHLKTLKL NCQGFKFPGF TYDHDALGIA KRMPELRCLQ LFGNRVSDVG LNAIFDGCPH LEHLDLRQCF NINLVGDLEK RCMERIKDLR
201: RPNDSTADYP YDTSLLDLGI
Arabidopsis Description
Putative nodulin [Source:UniProtKB/TrEMBL;Acc:Q9SY41]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.