Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G033100.1 | Wheat | cytosol | 93.64 | 94.21 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 93.03 | 93.6 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 87.58 | 89.2 |
| Zm00001d010914_P001 | Maize | cytosol | 67.27 | 67.89 |
| EES17669 | Sorghum | cytosol | 66.06 | 65.66 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 61.21 | 62.35 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 60.3 | 62.19 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 24.55 | 48.8 |
| Zm00001d024764_P001 | Maize | cytosol | 51.82 | 47.9 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 23.03 | 44.19 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 33.03 | 42.25 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 13.33 | 41.9 |
| PGSC0003DMT400058969 | Potato | cytosol | 10.91 | 40.45 |
| CDY21989 | Canola | cytosol | 9.7 | 39.51 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 37.88 | 38.7 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 34.55 | 38.64 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 40.0 | 37.71 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 34.85 | 37.58 |
| CDX73787 | Canola | cytosol | 29.09 | 37.5 |
| CDY48578 | Canola | cytosol | 28.48 | 37.45 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 39.09 | 37.39 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 39.09 | 37.28 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 23.03 | 37.07 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 35.15 | 37.06 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 34.55 | 37.01 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 22.73 | 36.95 |
| Bra034230.1-P | Field mustard | cytosol | 29.39 | 36.88 |
| Bra000723.1-P | Field mustard | cytosol | 16.67 | 36.18 |
| CDX99649 | Canola | cytosol | 25.45 | 36.05 |
| CDY21988 | Canola | cytosol | 16.36 | 35.76 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 24.24 | 35.71 |
| CDY15937 | Canola | cytosol | 25.15 | 35.62 |
| Bra030342.1-P | Field mustard | cytosol | 25.15 | 35.62 |
| TraesCS2B01G178700.1 | Wheat | plastid | 33.03 | 35.28 |
| CDX90789 | Canola | cytosol | 32.12 | 35.22 |
| Bra034229.1-P | Field mustard | cytosol | 29.39 | 35.14 |
| Solyc08g013780.1.1 | Tomato | cytosol | 13.03 | 34.96 |
| Bra034226.1-P | Field mustard | cytosol | 30.0 | 34.38 |
| CDY48574 | Canola | cytosol | 30.91 | 34.23 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 21.52 | 34.13 |
| KRH21099 | Soybean | cytosol | 32.12 | 34.08 |
| CDY48580 | Canola | cytosol | 31.52 | 33.88 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 32.73 | 33.64 |
| PGSC0003DMT400052833 | Potato | cytosol | 27.88 | 33.45 |
| Bra034227.1-P | Field mustard | plastid | 32.12 | 33.33 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 26.06 | 33.2 |
| AT4G03630.1 | Thale cress | cytosol | 22.12 | 33.18 |
| Solyc08g006940.2.1 | Tomato | cytosol | 31.21 | 33.12 |
| Bra030690.1-P | Field mustard | cytosol | 28.18 | 33.1 |
| CDY15618 | Canola | cytosol | 28.18 | 33.1 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 22.42 | 33.04 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 32.12 | 33.02 |
| KRH11147 | Soybean | cytosol | 31.82 | 33.02 |
| CDX86473 | Canola | cytosol | 25.45 | 32.81 |
| CDY48575 | Canola | plastid | 31.21 | 32.49 |
| AT4G05460.1 | Thale cress | cytosol | 29.7 | 32.45 |
| PGSC0003DMT400016134 | Potato | cytosol | 28.48 | 32.41 |
| AT5G52480.1 | Thale cress | cytosol | 23.64 | 32.37 |
| CDY48577 | Canola | cytosol | 27.58 | 32.27 |
| Bra000817.1-P | Field mustard | plastid | 17.58 | 32.22 |
| CDY21333 | Canola | nucleus, plastid | 28.48 | 31.97 |
| CDX77948 | Canola | cytosol | 16.36 | 31.95 |
| CDY59275 | Canola | plastid | 30.91 | 31.78 |
| PGSC0003DMT400015035 | Potato | cytosol | 29.39 | 31.7 |
| Solyc08g013800.2.1 | Tomato | cytosol | 27.88 | 31.29 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 18.18 | 31.09 |
| AT4G05475.1 | Thale cress | cytosol | 29.09 | 31.07 |
| PGSC0003DMT400090939 | Potato | cytosol | 28.48 | 31.02 |
| CDY62000 | Canola | plastid | 30.91 | 31.0 |
| CDY48576 | Canola | cytosol | 27.88 | 30.98 |
| AT4G05490.1 | Thale cress | plastid | 28.48 | 30.62 |
| PGSC0003DMT400015030 | Potato | cytosol | 27.27 | 30.41 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 31.52 | 30.23 |
| TraesCS6B01G067700.1 | Wheat | plastid | 24.55 | 30.22 |
| AT4G05497.1 | Thale cress | plastid | 22.42 | 30.08 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 27.88 | 30.07 |
| Bra034228.1-P | Field mustard | cytosol | 26.97 | 29.97 |
| Bra000816.1-P | Field mustard | plastid | 29.39 | 29.85 |
| CDY21986 | Canola | cytosol, plastid | 26.97 | 29.67 |
| CDY09910 | Canola | nucleus | 28.48 | 29.38 |
| CDY10283 | Canola | cytosol | 27.88 | 29.3 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 30.3 | 28.99 |
| CDY21990 | Canola | cytosol | 16.06 | 27.6 |
| PGSC0003DMT400054358 | Potato | cytosol | 28.18 | 27.43 |
| CDY06267 | Canola | nucleus | 28.79 | 27.3 |
| TraesCS6B01G310200.1 | Wheat | plastid | 29.39 | 26.87 |
| Bra031582.1-P | Field mustard | nucleus | 28.18 | 26.57 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 19.39 | 26.34 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 26.06 | 26.06 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 27.27 | 25.71 |
| Solyc08g013820.2.1 | Tomato | cytosol | 28.79 | 25.54 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 31.82 | 23.6 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 21.21 | 23.1 |
| CDY21983 | Canola | cytosol | 19.39 | 22.61 |
| TraesCS3B01G452300.1 | Wheat | plastid | 30.61 | 21.72 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 30.91 | 21.56 |
| Bra034194.1-P | Field mustard | cytosol | 29.09 | 17.94 |
| Bra020205.1-P | Field mustard | plastid | 30.3 | 17.64 |
| CDY09154 | Canola | plastid | 30.3 | 17.64 |
| CDY22112 | Canola | cytosol | 24.85 | 17.01 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G041200.1 | EnsemblPlantsGene:TraesCS1B01G041200 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | ncoils:Coil | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF4 | PFAM:PF12937 | PFscan:PS50181 |
| SEG:seg | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr1B:+:20585363..20588102
Molecular Weight (calculated)
36354.2 Da
IEP (calculated)
3.891
GRAVY (calculated)
-0.263
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDAGEGEG EGEVEIRDWA GMPSDALFAV FGRLDVADIL TGAGRACRAW RRLADGDPAL WRRLDMTHHG DILETEEAEA MARAAVDRAA GTLQSFCADT
101: FVTDALLSYI SGRAPSLKSL QLSLCDEVSN EALADAVKGF PQLEELEITF CSLNSNVCES VGRACPHLKS FRLNERWTVL QRGFAVFEGM DDDTGVLGIA
201: SSMPELRDLQ LIGNNLTNAG LAAILDHCPR LESLDVRRCC NLQMDDALRS KCARIGNLRL PGDPISDFKY RAYLAGSDDY PGGSDIEVDM YDDLLDVVTD
301: DDEDAEFDDM EDYIDDADWD ADMYDDVFDV
101: FVTDALLSYI SGRAPSLKSL QLSLCDEVSN EALADAVKGF PQLEELEITF CSLNSNVCES VGRACPHLKS FRLNERWTVL QRGFAVFEGM DDDTGVLGIA
201: SSMPELRDLQ LIGNNLTNAG LAAILDHCPR LESLDVRRCC NLQMDDALRS KCARIGNLRL PGDPISDFKY RAYLAGSDDY PGGSDIEVDM YDDLLDVVTD
301: DDEDAEFDDM EDYIDDADWD ADMYDDVFDV
001: MATSTTLQSL LMKEDEEQRN KRRTTSTMFL KKDDEERINW VDLPPELTTS ILLRLSVTDI LDNARKLCRA WRRICKDPSM WRKINLRDCL MYEFDFESMC
101: RHIVDLSQGG LLEINIEHFV SDSLLSYIVD RSCNLKSLGI SIYEPMTNKG VMNGIEKLPL LETLVIFHSS IKLDLKAIGH ACPQLKTLKL NSLGSELAHD
201: ISQVGYIPLL ECDDDALAIA ESMPKLRHLQ LMGNGLTNTG LNAILDGCPH LEEHLDVRKC FNINLVGNLE KRCMKRIKEL RRPHDSTADY PYSISVSMVV
301: QMMITSRYH
101: RHIVDLSQGG LLEINIEHFV SDSLLSYIVD RSCNLKSLGI SIYEPMTNKG VMNGIEKLPL LETLVIFHSS IKLDLKAIGH ACPQLKTLKL NSLGSELAHD
201: ISQVGYIPLL ECDDDALAIA ESMPKLRHLQ LMGNGLTNTG LNAILDGCPH LEEHLDVRKC FNINLVGNLE KRCMKRIKEL RRPHDSTADY PYSISVSMVV
301: QMMITSRYH
Arabidopsis Description
Putative F-box protein At4g05475 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.