CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04173

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	EES04173	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010914_P001	Maize	cytosol	90.06	91.44
Os02t0317300-01	Rice	cytosol	72.59	73.48
TraesCS1A01G033100.1	Wheat	cytosol	67.77	68.6
HORVU1Hr1G004970.3	Barley	cytosol	66.27	67.9
TraesCS1D01G034100.1	Wheat	cytosol	65.36	66.16
TraesCS1B01G041200.1	Wheat	cytosol	65.66	66.06
TraesCS2A01G071400.1	Wheat	cytosol	20.48	64.15
TraesCS2B01G085400.1	Wheat	cytosol	59.64	61.88
TraesCS2D01G070200.1	Wheat	cytosol	60.24	61.73
TraesCS2B01G085200.1	Wheat	cytosol	59.64	61.11
Zm00001d024764_P001	Maize	cytosol	65.06	60.5
PGSC0003DMT400058969	Potato	cytosol	10.84	40.45
KXG24675	Sorghum	cytosol	32.83	37.85
EES14679	Sorghum	nucleus	38.86	37.5
Solyc08g013780.1.1	Tomato	cytosol	13.86	37.4
Bra000817.1-P	Field mustard	plastid	19.88	36.67
CDX99649	Canola	cytosol	25.6	36.48
OQU80174	Sorghum	cytosol	14.46	35.82
CDY21989	Canola	cytosol	8.73	35.8
CDY15937	Canola	cytosol	25.0	35.62
Bra030342.1-P	Field mustard	cytosol	25.0	35.62
Bra034229.1-P	Field mustard	cytosol	29.52	35.51
KRH21099	Soybean	cytosol	33.13	35.37
CDY48580	Canola	cytosol	32.53	35.18
Bra034226.1-P	Field mustard	cytosol	30.12	34.72
Bra034227.1-P	Field mustard	plastid	32.83	34.28
CDY48578	Canola	cytosol	25.9	34.26
Bra034230.1-P	Field mustard	cytosol	27.11	34.22
PGSC0003DMT400016134	Potato	cytosol	29.82	34.14
AT4G05460.1	Thale cress	cytosol	31.02	34.11
CDX73787	Canola	cytosol	26.2	33.98
Bra034231.1-P	Field mustard	cytosol, plastid	26.51	33.98
VIT_10s0003g04300.t01	Wine grape	cytosol	32.83	33.96
CDX90789	Canola	cytosol	30.72	33.89
PGSC0003DMT400052833	Potato	cytosol	28.01	33.82
CDY21333	Canola	nucleus, plastid	29.82	33.67
KRH11147	Soybean	cytosol	32.23	33.65
CDY59275	Canola	plastid	32.53	33.64
AT4G03630.1	Thale cress	cytosol	22.29	33.64
CDX86473	Canola	cytosol	25.9	33.59
CDY48574	Canola	cytosol	30.12	33.56
Solyc08g006940.2.1	Tomato	cytosol	31.33	33.44
CDY48575	Canola	plastid	31.93	33.44
AT4G05497.1	Thale cress	plastid	24.7	33.33
AT4G05490.1	Thale cress	plastid	30.72	33.22
OQU80176	Sorghum	mitochondrion	22.29	33.18
CDY15618	Canola	cytosol	28.01	33.1
Bra030690.1-P	Field mustard	cytosol	28.01	33.1
CDY21988	Canola	cytosol	14.76	32.45
AT5G52480.1	Thale cress	cytosol	23.49	32.37
PGSC0003DMT400015035	Potato	cytosol	29.82	32.35
CDY48576	Canola	cytosol	28.92	32.32
CDY48577	Canola	cytosol	27.41	32.27
Bra000723.1-P	Field mustard	cytosol	14.76	32.24
CDY62000	Canola	plastid	31.93	32.22
Bra000816.1-P	Field mustard	plastid	31.02	31.69
KXG24670	Sorghum	cytosol	30.12	31.55
CDY21986	Canola	cytosol, plastid	28.31	31.33
Bra034228.1-P	Field mustard	cytosol	28.01	31.31
PGSC0003DMT400090939	Potato	cytosol	28.31	31.02
Solyc08g013800.2.1	Tomato	cytosol	27.41	30.95
CDY09910	Canola	nucleus	29.52	30.62
AT4G05475.1	Thale cress	cytosol	28.31	30.42
AT4G05470.1	Thale cress	cytosol, plastid	28.01	30.39
PGSC0003DMT400015030	Potato	cytosol	26.81	30.07
OQU80048	Sorghum	cytosol	25.6	29.82
PGSC0003DMT400054358	Potato	cytosol	30.42	29.79
CDY10283	Canola	cytosol	27.11	28.66
CDX77948	Canola	cytosol	14.46	28.4
EES14677	Sorghum	cytosol, mitochondrion, nucleus, plastid	39.76	28.09
CDY06267	Canola	nucleus	29.22	27.87
Bra031582.1-P	Field mustard	nucleus	29.22	27.71
CDY21990	Canola	cytosol	15.36	26.56
Solyc08g013820.2.1	Tomato	cytosol	29.52	26.34
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	21.39	23.43
CDY21983	Canola	cytosol	19.88	23.32
CDY09154	Canola	plastid	32.23	18.87
Bra020205.1-P	Field mustard	plastid	32.23	18.87
Bra034194.1-P	Field mustard	cytosol	29.22	18.13
CDY22112	Canola	cytosol	25.0	17.22

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:8068197	UniProt:C5YZK2	EnsemblPlants:EES17669
ProteinID:EES17669	ProteinID:EES17669.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937
PFscan:PS50181	PANTHER:PTHR44078	PANTHER:PTHR44078:SF4	SMART:SM00367	EnsemblPlantsGene:SORBI_3009G034400	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0001A886CD	RefSeq:XP_002439239.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:3144620..3148319

Molecular Weight (calculated)

36877.3 Da

IEP (calculated)

3.951

GRAVY (calculated)

-0.237

Length

332 amino acids

Sequence
(BLAST)

001: MSSSSLPPPP ASPPTAAEDE ARDWAEMPSD ALAAVFAKLD VAEILLGAGL VCRAWRRLAA SDPTLWRRVD MTYQGDQLQT EEVEAMARAA VDRAAGTMEA
101: FGAETFVNDE LLRYISQRVP SLKSLHLCLC HHVTNQGFAE AINGFPQLEE LDVTFCSLNG SMCETAGRAC PQLKCFRLNE RWCILQSEFA PYEGMDDDTE
201: ALGIASTMPG LQELQLIGNQ LTNDGLMAIL DRCPRLESLD IRQCYNIQMD DALKLKCARI RDLKLPHDSI SDFRYRAYIV SSIANTGSDF ELDMYDDLLD
301: VVTEDDDADF DDMDDFDDTV SDGGMYGDDF DI

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.