Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G085200.1 | Wheat | cytosol | 95.06 | 95.06 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 93.52 | 94.69 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 30.25 | 92.45 |
| Os02t0317300-01 | Rice | cytosol | 63.58 | 62.8 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 62.35 | 61.59 |
| Zm00001d010914_P001 | Maize | cytosol | 62.04 | 61.47 |
| EES17669 | Sorghum | cytosol | 61.73 | 60.24 |
| Zm00001d024764_P001 | Maize | cytosol | 50.93 | 46.22 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 21.91 | 41.28 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 37.96 | 40.2 |
| PGSC0003DMT400058969 | Potato | cytosol | 10.19 | 37.08 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 22.53 | 35.96 |
| CDX73787 | Canola | cytosol | 28.4 | 35.94 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 38.58 | 35.71 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 22.22 | 35.64 |
| CDX99649 | Canola | cytosol | 25.31 | 35.19 |
| CDY15937 | Canola | cytosol | 25.0 | 34.76 |
| Bra034226.1-P | Field mustard | cytosol | 30.86 | 34.72 |
| Bra030342.1-P | Field mustard | cytosol | 24.38 | 33.91 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 32.72 | 33.87 |
| CDY21988 | Canola | cytosol | 15.74 | 33.77 |
| KRH21099 | Soybean | cytosol | 32.41 | 33.76 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 31.17 | 33.55 |
| CDY48580 | Canola | cytosol | 31.79 | 33.55 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 35.8 | 33.53 |
| Bra000817.1-P | Field mustard | plastid | 18.52 | 33.33 |
| CDX90789 | Canola | cytosol | 30.86 | 33.22 |
| AT4G03630.1 | Thale cress | cytosol | 22.53 | 33.18 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 32.72 | 33.02 |
| TraesCS2D01G159000.1 | Wheat | plastid | 31.48 | 33.01 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 29.63 | 32.99 |
| Bra000723.1-P | Field mustard | cytosol | 15.43 | 32.89 |
| CDY48574 | Canola | cytosol | 30.25 | 32.89 |
| KRH11147 | Soybean | cytosol | 32.1 | 32.7 |
| CDY48578 | Canola | cytosol | 25.31 | 32.67 |
| Solyc08g013780.1.1 | Tomato | cytosol | 12.35 | 32.52 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 25.93 | 32.43 |
| PGSC0003DMT400052833 | Potato | cytosol | 27.47 | 32.36 |
| CDY21989 | Canola | cytosol | 8.02 | 32.1 |
| Bra034230.1-P | Field mustard | cytosol | 25.93 | 31.94 |
| Bra034229.1-P | Field mustard | cytosol | 27.16 | 31.88 |
| Bra030690.1-P | Field mustard | cytosol | 27.47 | 31.67 |
| CDY15618 | Canola | cytosol | 27.47 | 31.67 |
| AT5G52480.1 | Thale cress | cytosol | 23.46 | 31.54 |
| CDX86473 | Canola | cytosol | 24.69 | 31.25 |
| Bra034227.1-P | Field mustard | plastid | 30.56 | 31.13 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 32.41 | 30.79 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 29.94 | 30.7 |
| PGSC0003DMT400016134 | Potato | cytosol | 27.47 | 30.69 |
| CDY59275 | Canola | plastid | 30.25 | 30.53 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 31.48 | 30.45 |
| CDY48575 | Canola | plastid | 29.63 | 30.28 |
| CDY21333 | Canola | nucleus, plastid | 27.47 | 30.27 |
| Solyc08g006940.2.1 | Tomato | cytosol | 29.01 | 30.23 |
| CDX77948 | Canola | cytosol | 15.74 | 30.18 |
| AT4G05497.1 | Thale cress | plastid | 22.84 | 30.08 |
| PGSC0003DMT400090939 | Potato | cytosol | 27.78 | 29.7 |
| AT4G05460.1 | Thale cress | cytosol | 27.47 | 29.47 |
| CDY62000 | Canola | plastid | 29.63 | 29.18 |
| CDY48577 | Canola | cytosol | 25.31 | 29.08 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 28.09 | 28.62 |
| Bra000816.1-P | Field mustard | plastid | 28.4 | 28.31 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 29.94 | 28.2 |
| AT4G05475.1 | Thale cress | cytosol | 26.85 | 28.16 |
| AT4G05490.1 | Thale cress | plastid | 26.54 | 28.01 |
| CDY48576 | Canola | cytosol | 25.62 | 27.95 |
| PGSC0003DMT400015035 | Potato | cytosol | 26.23 | 27.78 |
| CDY21986 | Canola | cytosol, plastid | 25.62 | 27.67 |
| Bra034228.1-P | Field mustard | cytosol | 24.69 | 26.94 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 28.7 | 26.72 |
| PGSC0003DMT400015030 | Potato | cytosol | 24.38 | 26.69 |
| CDY21990 | Canola | cytosol | 15.74 | 26.56 |
| CDY09910 | Canola | nucleus | 26.23 | 26.56 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 25.0 | 26.47 |
| CDY10283 | Canola | cytosol | 25.62 | 26.43 |
| PGSC0003DMT400054358 | Potato | cytosol | 27.47 | 26.25 |
| Solyc08g013800.2.1 | Tomato | cytosol | 23.46 | 25.85 |
| TraesCS7D01G203600.1 | Wheat | plastid | 26.54 | 25.22 |
| CDY06267 | Canola | nucleus | 26.85 | 25.0 |
| TraesCS7D01G203500.1 | Wheat | plastid | 26.23 | 25.0 |
| Bra031582.1-P | Field mustard | nucleus | 26.85 | 24.86 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 10.49 | 23.94 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 31.48 | 23.29 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 21.6 | 23.1 |
| Solyc08g013820.2.1 | Tomato | cytosol | 25.62 | 22.31 |
| CDY21983 | Canola | cytosol | 18.52 | 21.2 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 30.56 | 21.15 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 21.3 | 18.6 |
| CDY09154 | Canola | plastid | 29.94 | 17.11 |
| Bra020205.1-P | Field mustard | plastid | 29.94 | 17.11 |
| Bra034194.1-P | Field mustard | cytosol | 27.16 | 16.45 |
| CDY22112 | Canola | cytosol | 21.91 | 14.73 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G070200.1 | EnsemblPlantsGene:TraesCS2D01G070200 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF4 | PFAM:PF12937 | PFAM:PF13516 |
| PFscan:PS50181 | SEG:seg | SUPFAM:SSF52047 | SUPFAM:SSF81383 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2D:+:29526704..29529998
Molecular Weight (calculated)
36791.6 Da
IEP (calculated)
3.946
GRAVY (calculated)
-0.380
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEEGESRD WAGMQSDALS TIFGKLDAAD LLTGAGQVCH AWRRLADSDT TLWRRVEMTH DGDVLEAGAM ACAAVDRAAG TMEAFWADTF VTDLLLRYIA
101: DRSFSLKSLQ ISFCDKVSDK GLAEAINLLP QLEELDISFC SLYGNFCELV DKSRSQLKCF RLNERWADFH KRFDAAYERM EIDPEASWIA NSMPRLQVLQ
201: LIGSEITNDG LMAILDHCPH LESLDIRMCY NLQIDDAMKS KCARIRNLKL PHDSISDFKY WAYVDSEDYS EDYSGSDFEV DMHDDLLDVV MDDDDDDADG
301: EFNYVDDYDD VGSESAMYDD VDDT
101: DRSFSLKSLQ ISFCDKVSDK GLAEAINLLP QLEELDISFC SLYGNFCELV DKSRSQLKCF RLNERWADFH KRFDAAYERM EIDPEASWIA NSMPRLQVLQ
201: LIGSEITNDG LMAILDHCPH LESLDIRMCY NLQIDDAMKS KCARIRNLKL PHDSISDFKY WAYVDSEDYS EDYSGSDFEV DMHDDLLDVV MDDDDDDADG
301: EFNYVDDYDD VGSESAMYDD VDDT
001: MATSTTLQSL LMKEDEEQRN KRRTTSTMFL KKDDEERINW VDLPPELTTS ILLRLSVTDI LDNARKLCRA WRRICKDPSM WRKINLRDCL MYEFDFESMC
101: RHIVDLSQGG LLEINIEHFV SDSLLSYIVD RSCNLKSLGI SIYEPMTNKG VMNGIEKLPL LETLVIFHSS IKLDLKAIGH ACPQLKTLKL NSLGSELAHD
201: ISQVGYIPLL ECDDDALAIA ESMPKLRHLQ LMGNGLTNTG LNAILDGCPH LEEHLDVRKC FNINLVGNLE KRCMKRIKEL RRPHDSTADY PYSISVSMVV
301: QMMITSRYH
101: RHIVDLSQGG LLEINIEHFV SDSLLSYIVD RSCNLKSLGI SIYEPMTNKG VMNGIEKLPL LETLVIFHSS IKLDLKAIGH ACPQLKTLKL NSLGSELAHD
201: ISQVGYIPLL ECDDDALAIA ESMPKLRHLQ LMGNGLTNTG LNAILDGCPH LEEHLDVRKC FNINLVGNLE KRCMKRIKEL RRPHDSTADY PYSISVSMVV
301: QMMITSRYH
Arabidopsis Description
Putative F-box protein At4g05475 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.