Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G203500.1 | Wheat | plastid | 81.52 | 81.76 |
| TraesCS6B01G067700.1 | Wheat | plastid | 38.12 | 48.51 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 44.87 | 44.35 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 45.75 | 44.07 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 34.6 | 43.7 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 45.16 | 43.63 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 43.11 | 43.11 |
| TraesCS6A01G051000.1 | Wheat | plastid | 46.63 | 42.74 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 43.7 | 42.57 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 16.72 | 40.14 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 39.0 | 38.44 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 27.27 | 38.27 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 23.75 | 38.03 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 38.12 | 37.14 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 30.5 | 35.74 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 31.09 | 35.22 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 35.19 | 35.19 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 32.55 | 35.13 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 20.82 | 34.98 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 20.23 | 34.16 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 16.72 | 33.14 |
| CDY21988 | Canola | cytosol | 14.08 | 31.79 |
| CDX99649 | Canola | cytosol | 21.7 | 31.76 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 28.74 | 31.31 |
| CDY21989 | Canola | cytosol | 7.33 | 30.86 |
| Bra034230.1-P | Field mustard | cytosol | 23.75 | 30.8 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 29.62 | 30.79 |
| Zm00001d046526_P001 | Maize | plastid | 25.51 | 30.74 |
| CDY15937 | Canola | cytosol | 20.82 | 30.47 |
| Bra030342.1-P | Field mustard | cytosol | 20.82 | 30.47 |
| CDY48578 | Canola | cytosol | 22.29 | 30.28 |
| CDX86473 | Canola | cytosol | 22.29 | 29.69 |
| CDY48576 | Canola | cytosol | 25.81 | 29.63 |
| Bra034228.1-P | Field mustard | cytosol | 25.51 | 29.29 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 27.27 | 29.25 |
| CDX73787 | Canola | cytosol | 21.7 | 28.91 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 18.77 | 28.83 |
| CDY48575 | Canola | plastid | 26.69 | 28.71 |
| Bra034227.1-P | Field mustard | plastid | 26.69 | 28.62 |
| Bra030690.1-P | Field mustard | cytosol | 23.46 | 28.47 |
| CDY15618 | Canola | cytosol | 23.46 | 28.47 |
| AT4G05497.1 | Thale cress | plastid | 20.53 | 28.46 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 25.51 | 28.43 |
| CDY48580 | Canola | cytosol | 25.51 | 28.34 |
| CDY21986 | Canola | cytosol, plastid | 24.93 | 28.33 |
| Bra034229.1-P | Field mustard | cytosol | 22.87 | 28.26 |
| CDY21333 | Canola | nucleus, plastid | 24.34 | 28.23 |
| AT4G03630.1 | Thale cress | cytosol | 18.18 | 28.18 |
| TraesCS2D01G159000.1 | Wheat | plastid | 25.51 | 28.16 |
| PGSC0003DMT400016134 | Potato | cytosol | 23.75 | 27.93 |
| Bra000817.1-P | Field mustard | plastid | 14.66 | 27.78 |
| Bra034226.1-P | Field mustard | cytosol | 23.46 | 27.78 |
| KRH21099 | Soybean | cytosol | 25.22 | 27.65 |
| CDX90789 | Canola | cytosol | 24.34 | 27.57 |
| AT4G05460.1 | Thale cress | cytosol | 24.34 | 27.48 |
| Solyc08g006940.2.1 | Tomato | cytosol | 24.93 | 27.33 |
| PGSC0003DMT400052833 | Potato | cytosol | 21.99 | 27.27 |
| CDX77948 | Canola | cytosol | 13.49 | 27.22 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 25.51 | 27.1 |
| PGSC0003DMT400058969 | Potato | cytosol | 7.04 | 26.97 |
| CDY48577 | Canola | cytosol | 22.29 | 26.95 |
| CDY48574 | Canola | cytosol | 23.46 | 26.85 |
| Bra000816.1-P | Field mustard | plastid | 25.51 | 26.77 |
| KRH11147 | Soybean | cytosol | 24.93 | 26.73 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 20.23 | 26.64 |
| CDY09910 | Canola | nucleus | 24.93 | 26.56 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 25.22 | 26.54 |
| CDY62000 | Canola | plastid | 25.51 | 26.44 |
| AT4G05490.1 | Thale cress | plastid | 23.75 | 26.38 |
| Solyc08g013800.2.1 | Tomato | cytosol | 22.58 | 26.19 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 23.46 | 26.14 |
| Solyc08g013780.1.1 | Tomato | cytosol | 9.38 | 26.02 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 26.1 | 25.87 |
| CDY59275 | Canola | plastid | 24.34 | 25.86 |
| PGSC0003DMT400090939 | Potato | cytosol | 22.87 | 25.74 |
| AT5G52480.1 | Thale cress | cytosol | 18.18 | 25.73 |
| AT4G05475.1 | Thale cress | cytosol | 23.17 | 25.57 |
| PGSC0003DMT400015035 | Potato | cytosol | 22.87 | 25.49 |
| CDY10283 | Canola | cytosol | 23.46 | 25.48 |
| CDY06267 | Canola | nucleus | 25.22 | 24.71 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 24.05 | 24.48 |
| PGSC0003DMT400015030 | Potato | cytosol | 21.11 | 24.32 |
| Bra031582.1-P | Field mustard | nucleus | 24.93 | 24.29 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 24.63 | 24.14 |
| PGSC0003DMT400054358 | Potato | cytosol | 23.46 | 23.6 |
| Solyc08g013820.2.1 | Tomato | cytosol | 23.17 | 21.24 |
| Bra000723.1-P | Field mustard | cytosol | 9.38 | 21.05 |
| CDY21990 | Canola | cytosol | 11.73 | 20.83 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 24.93 | 19.41 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 26.39 | 19.23 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 19.94 | 18.33 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 15.84 | 17.82 |
| CDY21983 | Canola | cytosol | 14.66 | 17.67 |
| Bra034194.1-P | Field mustard | cytosol | 24.63 | 15.7 |
| CDY22112 | Canola | cytosol | 21.7 | 15.35 |
| Bra020205.1-P | Field mustard | plastid | 24.63 | 14.81 |
| CDY09154 | Canola | plastid | 24.63 | 14.81 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G203600.1 | EnsemblPlantsGene:TraesCS7D01G203600 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR44078 | PANTHER:PTHR44078:SF3 | PFAM:PF12937 | PFscan:PS50181 | SEG:seg | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:161527834..161529417
Molecular Weight (calculated)
39787.0 Da
IEP (calculated)
7.089
GRAVY (calculated)
-0.416
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPPSLHQPP PPATPRGRKG RASRRRDRTW HVTVFNHMPV PWERDWADLP QDAISCILRK LDQVELLLGG AAAVCRSWRR IARHEPELWR CIDARDLPAV
101: PPFGWQAVRT NLVRSALRLS AGQCEVFAAE LFDDDLFLFL GEQAPLLKRL YLIKCYYVSK KVFAKVMRKF PLLEELELSM WFGSTEMLEI VAEACPRLKH
201: FSLIKKDRFY KPADDGNAFA IAKMHELRSL YLDSNRLTHK GLTVILDGCP HLEHLNVFEC KYLKMDDDLL EKCSRVNMAG PRYSLPYLPC SCCWSPDYPN
301: HEDYEDYRED SYYYIGDHID DDDLAEHERL LDVKGMRRYL P
101: PPFGWQAVRT NLVRSALRLS AGQCEVFAAE LFDDDLFLFL GEQAPLLKRL YLIKCYYVSK KVFAKVMRKF PLLEELELSM WFGSTEMLEI VAEACPRLKH
201: FSLIKKDRFY KPADDGNAFA IAKMHELRSL YLDSNRLTHK GLTVILDGCP HLEHLNVFEC KYLKMDDDLL EKCSRVNMAG PRYSLPYLPC SCCWSPDYPN
301: HEDYEDYRED SYYYIGDHID DDDLAEHERL LDVKGMRRYL P
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.