Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031582.1-P | Field mustard | nucleus | 98.85 | 98.29 |
| CDY09910 | Canola | nucleus | 84.48 | 91.88 |
| CDY21988 | Canola | cytosol | 29.02 | 66.89 |
| CDY10283 | Canola | cytosol | 57.76 | 64.01 |
| AT4G05460.1 | Thale cress | cytosol | 55.17 | 63.58 |
| CDY21333 | Canola | nucleus, plastid | 53.45 | 63.27 |
| CDY48578 | Canola | cytosol | 44.25 | 61.35 |
| CDX86473 | Canola | cytosol | 44.83 | 60.94 |
| CDY15618 | Canola | cytosol | 49.14 | 60.85 |
| CDY48580 | Canola | cytosol | 52.59 | 59.61 |
| CDY48576 | Canola | cytosol | 50.86 | 59.6 |
| CDY48574 | Canola | cytosol | 50.86 | 59.4 |
| CDY59275 | Canola | plastid | 54.6 | 59.19 |
| CDX90789 | Canola | cytosol | 50.29 | 58.14 |
| CDX99649 | Canola | cytosol | 38.51 | 57.51 |
| CDY21986 | Canola | cytosol, plastid | 49.14 | 57.0 |
| CDY15937 | Canola | cytosol | 37.93 | 56.65 |
| CDY62000 | Canola | plastid | 53.16 | 56.23 |
| CDX77948 | Canola | cytosol | 26.44 | 54.44 |
| CDX73787 | Canola | cytosol | 39.94 | 54.3 |
| CDY48575 | Canola | plastid | 49.14 | 53.94 |
| CDY21989 | Canola | cytosol | 12.36 | 53.09 |
| CDY48577 | Canola | cytosol | 42.24 | 52.13 |
| KRH21099 | Soybean | cytosol | 43.68 | 48.87 |
| CDY21990 | Canola | cytosol | 26.72 | 48.44 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 43.1 | 46.73 |
| KRH11147 | Soybean | cytosol | 41.95 | 45.91 |
| PGSC0003DMT400016134 | Potato | cytosol | 37.07 | 44.48 |
| PGSC0003DMT400058969 | Potato | cytosol | 11.21 | 43.82 |
| PGSC0003DMT400052833 | Potato | cytosol | 33.62 | 42.55 |
| Solyc08g006940.2.1 | Tomato | cytosol | 37.93 | 42.44 |
| PGSC0003DMT400090939 | Potato | cytosol | 35.63 | 40.92 |
| Solyc08g013800.2.1 | Tomato | cytosol | 33.33 | 39.46 |
| PGSC0003DMT400015030 | Potato | cytosol | 32.76 | 38.51 |
| PGSC0003DMT400015035 | Potato | cytosol | 33.62 | 38.24 |
| Solyc08g013780.1.1 | Tomato | cytosol | 13.51 | 38.21 |
| CDY21983 | Canola | cytosol | 31.03 | 38.16 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 28.16 | 36.7 |
| PGSC0003DMT400054358 | Potato | cytosol | 34.48 | 35.4 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 16.67 | 34.94 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 25.57 | 34.5 |
| CDY09154 | Canola | plastid | 54.02 | 33.16 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 22.13 | 33.05 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 28.45 | 32.35 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 28.45 | 32.35 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 27.01 | 32.3 |
| CDY22112 | Canola | cytosol | 44.54 | 32.16 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 18.68 | 32.02 |
| Os02t0317500-01 | Rice | cytosol | 29.89 | 31.52 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 9.48 | 31.43 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 31.03 | 31.3 |
| Solyc08g013820.2.1 | Tomato | cytosol | 33.33 | 31.18 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 18.1 | 31.03 |
| EES14679 | Sorghum | nucleus | 30.46 | 30.81 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 15.23 | 30.81 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 30.46 | 30.64 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 30.46 | 30.64 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 17.82 | 30.54 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 14.94 | 30.23 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 30.17 | 30.0 |
| Zm00001d010914_P001 | Maize | cytosol | 28.16 | 29.97 |
| Zm00001d024252_P001 | Maize | cytosol | 22.7 | 29.92 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 28.16 | 29.88 |
| KXG24675 | Sorghum | cytosol | 24.71 | 29.86 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 17.53 | 29.76 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 26.15 | 29.74 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 17.24 | 29.7 |
| Os02t0317300-01 | Rice | cytosol | 27.87 | 29.57 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 24.71 | 29.55 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 28.74 | 29.5 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 28.74 | 29.5 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 29.6 | 29.43 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 29.6 | 29.43 |
| KXG24670 | Sorghum | cytosol | 26.72 | 29.34 |
| Zm00001d024265_P001 | Maize | cytosol | 25.29 | 29.33 |
| Zm00001d046526_P001 | Maize | plastid | 23.85 | 29.33 |
| Os08t0194350-00 | Rice | cytosol | 22.41 | 29.32 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 27.3 | 29.32 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 8.33 | 29.29 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 27.59 | 29.27 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 26.15 | 29.26 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 25.86 | 29.22 |
| EES17669 | Sorghum | cytosol | 27.87 | 29.22 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 29.02 | 29.19 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 24.71 | 29.15 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 27.01 | 29.1 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 25.57 | 28.9 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 17.24 | 28.85 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 25.57 | 28.8 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 27.3 | 28.79 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 25.86 | 28.75 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 25.57 | 28.71 |
| TraesCS2B01G178700.1 | Wheat | plastid | 25.29 | 28.48 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 24.71 | 28.48 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 27.87 | 28.45 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 25.57 | 28.43 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 24.43 | 28.24 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 25.57 | 28.16 |
| TraesCS2D01G159000.1 | Wheat | plastid | 25.0 | 28.16 |
| Os11t0637300-00 | Rice | cytosol | 9.48 | 27.5 |
| OQU80176 | Sorghum | mitochondrion | 17.53 | 27.35 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 25.0 | 26.85 |
| Os08t0193500-00 | Rice | cytosol | 16.67 | 26.48 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 24.14 | 26.17 |
| Os08t0193200-00 | Rice | cytosol | 8.62 | 26.09 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 23.85 | 25.94 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 24.14 | 25.93 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 16.67 | 25.89 |
| TraesCS7D01G203500.1 | Wheat | plastid | 25.0 | 25.59 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 7.76 | 25.47 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 23.28 | 25.47 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 16.38 | 25.45 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 16.09 | 25.23 |
| TraesCS7D01G203600.1 | Wheat | plastid | 24.71 | 25.22 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 24.14 | 25.07 |
| Os08t0193900-01 | Rice | nucleus | 28.45 | 25.0 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 25.0 | 25.0 |
| TraesCS6B01G067700.1 | Wheat | plastid | 19.25 | 25.0 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 23.56 | 24.85 |
| Zm00001d024764_P001 | Maize | cytosol | 25.29 | 24.65 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 10.06 | 24.65 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 8.33 | 24.58 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 24.14 | 24.42 |
| OQU80048 | Sorghum | cytosol | 19.83 | 24.21 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 23.85 | 24.13 |
| Os08t0191300-00 | Rice | cytosol, golgi | 17.53 | 23.74 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 18.97 | 23.49 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 28.74 | 23.15 |
| HORVU2Hr1G077990.2 | Barley | plastid | 24.71 | 22.99 |
| TraesCS6B01G310200.1 | Wheat | plastid | 23.85 | 22.99 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 23.28 | 22.95 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 23.28 | 22.88 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 22.7 | 22.57 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 13.79 | 22.54 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 12.36 | 22.28 |
| Os08t0193300-00 | Rice | cytosol | 21.26 | 22.22 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 21.55 | 21.99 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 15.23 | 21.81 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 18.97 | 21.78 |
| OQU80174 | Sorghum | cytosol | 8.33 | 21.64 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 29.02 | 21.49 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 21.26 | 21.45 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 14.94 | 20.8 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 16.09 | 20.74 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 23.28 | 20.45 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 25.57 | 20.32 |
| TraesCS6A01G051000.1 | Wheat | plastid | 21.55 | 20.16 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 27.3 | 20.04 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 25.57 | 20.0 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 26.72 | 19.87 |
| TraesCS3B01G452300.1 | Wheat | plastid | 26.44 | 19.78 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 26.72 | 19.66 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 21.26 | 18.93 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 26.72 | 18.75 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 16.09 | 18.73 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 16.09 | 18.54 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 16.38 | 15.36 |
| Os08t0196200-01 | Rice | cytosol | 8.05 | 10.22 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.86 | 0.79 |
Protein Annotations
| EnsemblPlants:CDY06267 | EnsemblPlantsGene:GSBRNA2T00122185001 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR44078 |
| PANTHER:PTHR44078:SF5 | PFAM:PF12937 | PFscan:PS50181 | ProteinID:CDY06267 | ProteinID:CDY06267.1 | SEG:seg |
| SMART:SM00256 | SMART:SM00367 | SUPFAM:SSF52047 | UniParc:UPI0004EDB097 | MapMan:35.1 | : |
Description
BnaA09g49360D
Coordinates
chrLK031968:+:543878..545912
Molecular Weight (calculated)
39392.7 Da
IEP (calculated)
4.572
GRAVY (calculated)
-0.321
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSSPSP TAMKEGDYYP NWTELPPELT SSILHRLGAI EIVETARRVC RSWRRVCKDP SMWRKIDMRN LGDHGDMYYE ELCRHAVDLS QGGLVEINLC
101: HFATDSLLSY IADRFQNLMV VLKKNIHLMV GSNIVMLLRA KCVSFSSSNL RSLKVAQCYE ITSEGLIEAA AKLPLLEELE VSYCSLSEES LKVIGKSCPN
201: LKTLKKNCVG YRRPRDESDD VALAIAETMP GLRHLQLFGD RLTDVGLNAI LDGCPNLEHL DLRQCFNVEL VGYLEKRCLE RVKVVRRPND SVHDYPFDAT
301: VNDVSSSDDG DPYGLSDVDI MSEDEFYYDD LSEDASDNSD FDPYEYYY
101: HFATDSLLSY IADRFQNLMV VLKKNIHLMV GSNIVMLLRA KCVSFSSSNL RSLKVAQCYE ITSEGLIEAA AKLPLLEELE VSYCSLSEES LKVIGKSCPN
201: LKTLKKNCVG YRRPRDESDD VALAIAETMP GLRHLQLFGD RLTDVGLNAI LDGCPNLEHL DLRQCFNVEL VGYLEKRCLE RVKVVRRPND SVHDYPFDAT
301: VNDVSSSDDG DPYGLSDVDI MSEDEFYYDD LSEDASDNSD FDPYEYYY
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.