Factsheet for TraesCS2A01G153600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	TraesCS3A01G457400.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3B01G497300.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3D01G450200.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G159000.1	Wheat	plastid	93.2	93.2
TraesCS2B01G178700.1	Wheat	plastid	91.59	91.59
HORVU2Hr1G027710.1	Barley	cytosol	81.88	86.94
HORVU2Hr1G027770.2	Barley	mitochondrion	83.82	85.76
TraesCS7A01G484100.1	Wheat	cytosol	18.12	56.57
Os11t0637300-00	Rice	cytosol	21.04	54.17
TraesCS5A01G471800.1	Wheat	cytosol	31.07	47.29
TraesCS2A01G071400.1	Wheat	cytosol	14.56	42.45
TraesCS7A01G304900.1	Wheat	mitochondrion, nucleus	35.92	41.57
CDY21988	Canola	cytosol	18.45	37.75
TraesCS1A01G033100.1	Wheat	cytosol	38.19	35.98
CDY48578	Canola	cytosol	28.16	34.66
TraesCS5A01G075400.1	Wheat	cytosol	34.3	34.64
CDX77948	Canola	cytosol	18.77	34.32
AT4G03630.1	Thale cress	cytosol	24.27	34.09
Bra034230.1-P	Field mustard	cytosol	28.8	33.84
Bra034229.1-P	Field mustard	cytosol	30.1	33.7
CDX99649	Canola	cytosol	25.24	33.48
CDX73787	Canola	cytosol	27.51	33.2
Os08t0195000-00	Rice	cytosol, peroxisome, plastid	26.86	33.2
CDY15937	Canola	cytosol	24.92	33.05
TraesCS7A01G193100.1	Wheat	cytosol	32.69	32.79
TraesCS3A01G411000.1	Wheat	nucleus	35.92	32.74
Bra030342.1-P	Field mustard	cytosol	24.27	32.19
TraesCS2A01G313400.1	Wheat	cytosol	32.36	32.15
Bra034226.1-P	Field mustard	cytosol	29.77	31.94
TraesCS3A01G410700.1	Wheat	mitochondrion	35.92	31.71
CDY48577	Canola	cytosol	28.8	31.56
CDY48576	Canola	cytosol	29.77	30.98
Bra034227.1-P	Field mustard	plastid	31.72	30.82
CDY21986	Canola	cytosol, plastid	29.77	30.67
CDY21333	Canola	nucleus, plastid	29.13	30.61
CDY48575	Canola	plastid	31.39	30.6
KRH21099	Soybean	cytosol	30.74	30.55
Bra034228.1-P	Field mustard	cytosol	29.13	30.3
CDY48580	Canola	cytosol	30.1	30.29
CDY48574	Canola	cytosol	29.13	30.2
Bra034231.1-P	Field mustard	cytosol, plastid	25.24	30.12
TraesCS1A01G128000.1	Wheat	cytosol	22.65	30.04
AT4G05497.1	Thale cress	plastid	23.62	29.67
PGSC0003DMT400016134	Potato	cytosol	27.83	29.66
Os08t0191300-00	Rice	cytosol, golgi	24.6	29.57
CDX90789	Canola	cytosol	28.8	29.57
KRH11147	Soybean	cytosol	30.42	29.56
Bra030690.1-P	Field mustard	cytosol	26.86	29.54
CDY15618	Canola	cytosol	26.86	29.54
Solyc08g006940.2.1	Tomato	cytosol	29.45	29.26
AT4G05460.1	Thale cress	cytosol	28.48	29.14
CDY59275	Canola	plastid	29.77	28.66
VIT_10s0003g04300.t01	Wine grape	cytosol	29.77	28.66
CDX86473	Canola	cytosol	23.62	28.52
CDY21989	Canola	cytosol	7.44	28.4
AT4G05490.1	Thale cress	plastid	28.16	28.34
Bra000817.1-P	Field mustard	plastid	16.5	28.33
CDY62000	Canola	plastid	30.1	28.27
PGSC0003DMT400052833	Potato	cytosol	24.92	28.0
AT5G52480.1	Thale cress	cytosol	21.68	27.8
AT4G05475.1	Thale cress	cytosol	27.51	27.51
Solyc08g013800.2.1	Tomato	cytosol	25.89	27.21
PGSC0003DMT400015035	Potato	cytosol	26.86	27.12
Bra000816.1-P	Field mustard	plastid	28.48	27.08
PGSC0003DMT400058969	Potato	cytosol	7.77	26.97
CDY09910	Canola	nucleus	27.83	26.88
AT4G05470.1	Thale cress	cytosol, plastid	26.54	26.8
CDY10283	Canola	cytosol	27.18	26.75
PGSC0003DMT400090939	Potato	cytosol	26.21	26.73
CDY21990	Canola	cytosol	16.18	26.04
PGSC0003DMT400054358	Potato	cytosol	28.48	25.96
TraesCS2A01G119000.1	Wheat	nucleus	35.92	25.69
CDY06267	Canola	nucleus	28.8	25.57
PGSC0003DMT400015030	Potato	cytosol	24.27	25.34
Solyc08g013780.1.1	Tomato	cytosol	10.03	25.2
Bra031582.1-P	Field mustard	nucleus	28.48	25.14
TraesCS3A01G417500.1	Wheat	cytosol	30.74	24.3
TraesCS6A01G089600.1	Wheat	cytosol, mitochondrion	26.54	24.05
Bra000723.1-P	Field mustard	cytosol	11.33	23.03
TraesCS6A01G090000.1	Wheat	mitochondrion	25.89	22.66
TraesCS3A01G417400.1	Wheat	cytosol	36.25	22.58
TraesCS6A01G051000.1	Wheat	plastid	26.86	22.31
Solyc08g013820.2.1	Tomato	cytosol	26.21	21.77
CDY21983	Canola	cytosol	16.5	18.02
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	16.83	17.16
Bra034194.1-P	Field mustard	cytosol	28.16	16.26
Bra020205.1-P	Field mustard	plastid	29.45	16.05
CDY09154	Canola	plastid	29.45	16.05
CDY22112	Canola	cytosol	23.95	15.35

Protein Annotations

EnsemblPlants:TraesCS2A01G153600.1	EnsemblPlantsGene:TraesCS2A01G153600	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_2	PANTHER:PTHR44078	PANTHER:PTHR44078:SF5	PFAM:PF07723	PFAM:PF12937	PFscan:PS50181
SEG:seg	SUPFAM:SSF52047	SUPFAM:SSF81383	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr2A:+:101535323..101537046

Molecular Weight (calculated)

34671.1 Da

IEP (calculated)

6.174

GRAVY (calculated)

-0.001

Length

309 amino acids

Sequence
(BLAST)

001: MLQASPQSPI MMSGVSFVVS RDVCRRRLSH SHEMEVQPEA VRDWSELPLD VLASVFTKLG AVDILMGAGL VCHSWLEAAK VPSLWRYVDM EHHDVLRGKK
101: KKSHDVLCAM AKAAVDRSNG ELEVFAGSGF VTDQLLNYIA ERSPSLKSLS LDYCNVSNEA FTELIIKLPL LEELLISLCP FVDGDAYEVT SRACAQLKRL
201: MLRQGSYGGT RDGALGIEMM HELRYLTLVG CNITTEELVA IIDGCPHMER LCVRDCCNII VDGTLRAKCS RIKTLILPPL QHLQQLYSRY CFHPDDSLFT
301: DKFDDWRSS

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.