Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G098530.4 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | HORVU3Hr1G098530.4 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G027710.1 | Barley | cytosol | 96.03 | 99.66 |
| TraesCS2D01G159000.1 | Wheat | plastid | 87.75 | 85.76 |
| TraesCS2B01G178700.1 | Wheat | plastid | 87.09 | 85.11 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 85.76 | 83.82 |
| Os11t0637300-00 | Rice | cytosol | 20.86 | 52.5 |
| Zm00001d024252_P001 | Maize | cytosol | 41.39 | 47.35 |
| KXG24675 | Sorghum | cytosol | 40.73 | 42.71 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 37.42 | 34.88 |
| CDY21988 | Canola | cytosol | 16.89 | 33.77 |
| CDX73787 | Canola | cytosol | 28.15 | 33.2 |
| AT4G03630.1 | Thale cress | cytosol | 24.17 | 33.18 |
| CDX77948 | Canola | cytosol | 18.54 | 33.14 |
| CDX99649 | Canola | cytosol | 25.17 | 32.62 |
| CDY48578 | Canola | cytosol | 26.82 | 32.27 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 36.09 | 32.15 |
| Bra034230.1-P | Field mustard | cytosol | 27.81 | 31.94 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 26.16 | 31.6 |
| Bra034229.1-P | Field mustard | cytosol | 28.81 | 31.52 |
| CDY15937 | Canola | cytosol | 24.17 | 31.33 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 31.79 | 30.97 |
| Bra030342.1-P | Field mustard | cytosol | 23.84 | 30.9 |
| Bra034226.1-P | Field mustard | cytosol | 29.14 | 30.56 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 11.92 | 30.51 |
| CDY48576 | Canola | cytosol | 29.8 | 30.3 |
| CDY21986 | Canola | cytosol, plastid | 29.8 | 30.0 |
| Bra034227.1-P | Field mustard | plastid | 31.46 | 29.87 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 25.5 | 29.73 |
| PGSC0003DMT400016134 | Potato | cytosol | 28.48 | 29.66 |
| CDY48575 | Canola | plastid | 31.13 | 29.65 |
| CDY48580 | Canola | cytosol | 30.13 | 29.64 |
| CDY21989 | Canola | cytosol | 7.95 | 29.63 |
| Bra034228.1-P | Field mustard | cytosol | 29.14 | 29.63 |
| CDY21333 | Canola | nucleus, plastid | 28.81 | 29.59 |
| KRH21099 | Soybean | cytosol | 30.46 | 29.58 |
| CDY48577 | Canola | cytosol | 27.48 | 29.43 |
| Solyc08g006940.2.1 | Tomato | cytosol | 30.13 | 29.26 |
| KRH11147 | Soybean | cytosol | 30.79 | 29.25 |
| Os08t0191300-00 | Rice | cytosol, golgi | 24.83 | 29.18 |
| CDX90789 | Canola | cytosol | 28.81 | 28.9 |
| CDY48574 | Canola | cytosol | 28.15 | 28.52 |
| AT4G05460.1 | Thale cress | cytosol | 28.48 | 28.48 |
| CDY15618 | Canola | cytosol | 26.49 | 28.47 |
| Bra030690.1-P | Field mustard | cytosol | 26.49 | 28.47 |
| AT4G05497.1 | Thale cress | plastid | 23.18 | 28.46 |
| Bra000817.1-P | Field mustard | plastid | 16.89 | 28.33 |
| CDX86473 | Canola | cytosol | 23.84 | 28.12 |
| PGSC0003DMT400058969 | Potato | cytosol | 8.28 | 28.09 |
| AT5G52480.1 | Thale cress | cytosol | 22.19 | 27.8 |
| CDY59275 | Canola | plastid | 29.47 | 27.73 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 29.47 | 27.73 |
| AT4G05490.1 | Thale cress | plastid | 28.15 | 27.69 |
| CDY62000 | Canola | plastid | 30.13 | 27.66 |
| AT4G05475.1 | Thale cress | cytosol | 28.15 | 27.51 |
| CDY10283 | Canola | cytosol | 28.15 | 27.07 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 25.17 | 27.05 |
| PGSC0003DMT400052833 | Potato | cytosol | 24.5 | 26.91 |
| Solyc08g013800.2.1 | Tomato | cytosol | 26.16 | 26.87 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 27.15 | 26.8 |
| Bra000816.1-P | Field mustard | plastid | 28.81 | 26.77 |
| PGSC0003DMT400090939 | Potato | cytosol | 26.82 | 26.73 |
| PGSC0003DMT400015035 | Potato | cytosol | 26.82 | 26.47 |
| CDY09910 | Canola | nucleus | 27.81 | 26.25 |
| Solyc08g013780.1.1 | Tomato | cytosol | 10.6 | 26.02 |
| PGSC0003DMT400054358 | Potato | cytosol | 28.81 | 25.66 |
| CDY21990 | Canola | cytosol | 15.89 | 25.0 |
| HORVU2Hr1G077990.2 | Barley | plastid | 30.79 | 24.87 |
| CDY06267 | Canola | nucleus | 28.48 | 24.71 |
| PGSC0003DMT400015030 | Potato | cytosol | 23.84 | 24.32 |
| Bra031582.1-P | Field mustard | nucleus | 28.15 | 24.29 |
| Bra000723.1-P | Field mustard | cytosol | 11.92 | 23.68 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 36.76 | 23.42 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 29.8 | 22.73 |
| Solyc08g013820.2.1 | Tomato | cytosol | 26.16 | 21.24 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 14.57 | 20.66 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 18.87 | 19.06 |
| CDY21983 | Canola | cytosol | 16.89 | 18.02 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 17.22 | 17.16 |
| Bra034194.1-P | Field mustard | cytosol | 28.48 | 16.07 |
| CDY09154 | Canola | plastid | 29.14 | 15.52 |
| Bra020205.1-P | Field mustard | plastid | 29.14 | 15.52 |
| CDY22112 | Canola | cytosol | 23.84 | 14.94 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G027770.2 | EnsemblPlantsGene:HORVU2Hr1G027770 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR44078 | PANTHER:PTHR44078:SF5 | PFAM:PF12937 | PFscan:PS50181 | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| UniParc:UPI000B46D0B5 | UniProt:A0A287HHP3 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:92830541..92833656
Molecular Weight (calculated)
34139.5 Da
IEP (calculated)
7.225
GRAVY (calculated)
-0.116
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQVFHPSPK RMNGVSRGVY RRRLSHSREM EVQADAVRDW SKLPPDMLVL VFAKLGAVDV LMGAGLVCHS WLEAAKEPSI WRNVDMEHHD VLRGKKKKSR
101: DVLCAMAKAA VDRSKGELEV FAGSEFVTDQ LLEYIAERSP SLKSLSLDYC HVSNEAFTEL IIKFPLLEEL LISLCPFVNG DAYEVTSRAC AQLKRLMLRQ
201: GSYGGESDGA LGIEMMHELR YLTLVGSDIT TEELVAIIDG CPHLERLCVR NCCNIVVDGA LRAKCSRIKT LILPPLQHVR CRYRFHPDDT IFTDKFDDWR
301: SS
101: DVLCAMAKAA VDRSKGELEV FAGSEFVTDQ LLEYIAERSP SLKSLSLDYC HVSNEAFTEL IIKFPLLEEL LISLCPFVNG DAYEVTSRAC AQLKRLMLRQ
201: GSYGGESDGA LGIEMMHELR YLTLVGSDIT TEELVAIIDG CPHLERLCVR NCCNIVVDGA LRAKCSRIKT LILPPLQHVR CRYRFHPDDT IFTDKFDDWR
301: SS
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.