Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030690.1-P | Field mustard | cytosol | 99.64 | 99.64 |
| CDX86473 | Canola | cytosol | 87.19 | 95.7 |
| CDY21988 | Canola | cytosol | 32.38 | 60.26 |
| CDY09910 | Canola | nucleus | 60.85 | 53.44 |
| CDY48578 | Canola | cytosol | 47.33 | 52.99 |
| CDY48580 | Canola | cytosol | 57.3 | 52.44 |
| CDY48574 | Canola | cytosol | 54.45 | 51.34 |
| CDX73787 | Canola | cytosol | 46.62 | 51.17 |
| CDX90789 | Canola | cytosol | 54.09 | 50.5 |
| CDY59275 | Canola | plastid | 57.65 | 50.47 |
| CDX77948 | Canola | cytosol | 30.25 | 50.3 |
| AT4G05460.1 | Thale cress | cytosol | 53.74 | 50.0 |
| CDY06267 | Canola | nucleus | 60.85 | 49.14 |
| CDY62000 | Canola | plastid | 56.58 | 48.33 |
| CDY48575 | Canola | plastid | 54.45 | 48.27 |
| CDY21989 | Canola | cytosol | 13.88 | 48.15 |
| CDY21333 | Canola | nucleus, plastid | 50.18 | 47.96 |
| CDX99649 | Canola | cytosol | 39.5 | 47.64 |
| CDY48576 | Canola | cytosol | 50.18 | 47.47 |
| CDY15937 | Canola | cytosol | 38.79 | 46.78 |
| CDY10283 | Canola | cytosol | 51.6 | 46.18 |
| CDY21986 | Canola | cytosol, plastid | 48.75 | 45.67 |
| CDY48577 | Canola | cytosol | 44.84 | 44.68 |
| PGSC0003DMT400058969 | Potato | cytosol | 13.17 | 41.57 |
| KRH21099 | Soybean | cytosol | 45.91 | 41.48 |
| CDY21990 | Canola | cytosol | 28.11 | 41.15 |
| KRH11147 | Soybean | cytosol | 46.26 | 40.88 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 46.26 | 40.5 |
| PGSC0003DMT400052833 | Potato | cytosol | 37.37 | 38.18 |
| PGSC0003DMT400016134 | Potato | cytosol | 38.79 | 37.59 |
| Solyc08g013800.2.1 | Tomato | cytosol | 39.15 | 37.41 |
| Solyc08g006940.2.1 | Tomato | cytosol | 40.57 | 36.66 |
| PGSC0003DMT400090939 | Potato | cytosol | 39.15 | 36.3 |
| PGSC0003DMT400015035 | Potato | cytosol | 39.5 | 36.27 |
| PGSC0003DMT400015030 | Potato | cytosol | 37.72 | 35.81 |
| Solyc08g013780.1.1 | Tomato | cytosol | 15.3 | 34.96 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 31.32 | 32.96 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 30.25 | 32.95 |
| CDY21983 | Canola | cytosol | 33.1 | 32.86 |
| Zm00001d024252_P001 | Maize | cytosol | 29.54 | 31.44 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 11.74 | 31.43 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 19.22 | 31.4 |
| PGSC0003DMT400054358 | Potato | cytosol | 37.37 | 30.97 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 18.86 | 30.81 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 22.06 | 30.54 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 22.06 | 30.54 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 32.38 | 29.74 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 21.35 | 29.7 |
| Solyc08g013820.2.1 | Tomato | cytosol | 39.15 | 29.57 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 34.16 | 29.27 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 21.35 | 29.27 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 24.2 | 29.18 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 21.0 | 29.06 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 35.59 | 28.99 |
| KXG24675 | Sorghum | cytosol | 29.54 | 28.82 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 30.25 | 28.81 |
| Os02t0317500-01 | Rice | cytosol | 33.81 | 28.79 |
| Zm00001d010914_P001 | Maize | cytosol | 33.45 | 28.75 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 33.1 | 28.7 |
| Os08t0194350-00 | Rice | cytosol | 27.05 | 28.57 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 31.32 | 28.57 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 31.32 | 28.57 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 29.54 | 28.52 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 33.1 | 28.35 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 16.73 | 28.31 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 33.1 | 28.18 |
| CDY09154 | Canola | plastid | 56.58 | 28.04 |
| EES17669 | Sorghum | cytosol | 33.1 | 28.01 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 30.25 | 27.78 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 34.52 | 27.71 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 34.52 | 27.71 |
| EES14679 | Sorghum | nucleus | 33.81 | 27.62 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 30.96 | 27.53 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 28.47 | 27.49 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 31.67 | 27.47 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 33.81 | 27.46 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 29.89 | 27.45 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 30.25 | 27.42 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 30.96 | 27.19 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 33.45 | 27.17 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 29.54 | 26.86 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 33.45 | 26.86 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 30.96 | 26.85 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 32.38 | 26.84 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 28.47 | 26.58 |
| Os02t0317300-01 | Rice | cytosol | 30.96 | 26.52 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 28.47 | 26.49 |
| Zm00001d024265_P001 | Maize | cytosol | 28.11 | 26.33 |
| KXG24670 | Sorghum | cytosol | 29.54 | 26.18 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 29.89 | 26.01 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 19.22 | 25.96 |
| TraesCS2B01G178700.1 | Wheat | plastid | 28.47 | 25.89 |
| Os11t0637300-00 | Rice | cytosol | 11.03 | 25.83 |
| TraesCS6B01G067700.1 | Wheat | plastid | 24.56 | 25.75 |
| CDY22112 | Canola | cytosol | 44.13 | 25.73 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 28.47 | 25.72 |
| TraesCS2D01G159000.1 | Wheat | plastid | 28.11 | 25.57 |
| OQU80176 | Sorghum | mitochondrion | 20.28 | 25.56 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 30.96 | 25.51 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 20.28 | 25.45 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 31.32 | 25.43 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 28.11 | 25.24 |
| Os08t0193200-00 | Rice | cytosol | 10.32 | 25.22 |
| Zm00001d046526_P001 | Maize | plastid | 25.27 | 25.09 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 30.25 | 25.07 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 27.76 | 24.92 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 10.32 | 24.58 |
| OQU80048 | Sorghum | cytosol | 24.91 | 24.56 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 19.57 | 24.55 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 9.25 | 24.53 |
| Zm00001d024764_P001 | Maize | cytosol | 30.96 | 24.37 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 8.54 | 24.24 |
| Os08t0193500-00 | Rice | cytosol | 18.86 | 24.2 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 18.86 | 23.87 |
| Os08t0193900-01 | Rice | nucleus | 33.45 | 23.74 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 23.49 | 23.49 |
| TraesCS7D01G203600.1 | Wheat | plastid | 28.47 | 23.46 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 16.01 | 23.32 |
| TraesCS7D01G203500.1 | Wheat | plastid | 28.11 | 23.24 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 25.98 | 22.74 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 27.4 | 22.58 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 26.33 | 22.42 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 27.76 | 22.41 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 16.73 | 22.07 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 24.91 | 22.01 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 25.98 | 21.79 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 18.51 | 21.4 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 26.69 | 21.25 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 26.69 | 21.19 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 25.98 | 21.16 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 26.33 | 21.14 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 22.78 | 21.12 |
| TraesCS6B01G310200.1 | Wheat | plastid | 27.05 | 21.05 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 25.27 | 20.64 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 25.27 | 20.64 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 31.67 | 20.6 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 19.57 | 20.37 |
| HORVU2Hr1G077990.2 | Barley | plastid | 27.05 | 20.32 |
| OQU80174 | Sorghum | cytosol | 9.61 | 20.15 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 17.79 | 20.0 |
| TraesCS6A01G051000.1 | Wheat | plastid | 26.33 | 19.89 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 9.96 | 19.72 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 32.74 | 19.57 |
| Os08t0191300-00 | Rice | cytosol, golgi | 17.79 | 19.46 |
| Os08t0193300-00 | Rice | cytosol | 22.78 | 19.22 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 27.05 | 19.19 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 29.54 | 18.65 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 28.83 | 18.49 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 30.61 | 18.14 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 30.25 | 17.97 |
| TraesCS3B01G452300.1 | Wheat | plastid | 29.54 | 17.85 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 29.54 | 17.73 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 18.15 | 17.06 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 18.15 | 16.89 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 23.49 | 16.88 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 29.54 | 16.73 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 20.64 | 15.63 |
| Os08t0196200-01 | Rice | cytosol | 9.61 | 9.85 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.71 | 0.53 |
Protein Annotations
| EnsemblPlants:CDY15618 | EnsemblPlantsGene:GSBRNA2T00089805001 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44078 |
| PANTHER:PTHR44078:SF5 | PFAM:PF12937 | PFscan:PS50181 | ProteinID:CDY15618 | ProteinID:CDY15618.1 | SMART:SM00256 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0004EE10EE | UniProt:A0A078FTJ0 | MapMan:35.1 | : |
Description
BnaA08g29020DBnaA08g29020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTJ0]
Coordinates
chrLK032055:+:747967..749614
Molecular Weight (calculated)
31792.0 Da
IEP (calculated)
4.442
GRAVY (calculated)
-0.263
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQGQEYPNW LELPPELTSS ILNRLGVMEI LESAQKVCRS WRRICKEPLT WSKIDMRNVG HMGGSSHELE KICRHAVERS QGGLVEIEIW HFATHDLLNY
101: IADSSSKLRS LKLAMCYLIE NEGLIEVIAK LPLLEVLEVS YCSLSGEPLE PIVPSSCPNQ MTLGNNCDDV ALAIAESMPG LTRLQLFGNR LTNFGLNAIL
201: DRCPNLEYLD LRQCINVDIV GDMERRCYER IKVLRRPNDP VDDYPYGVSD VDEMSEEYYG NYSAASDYSD TGEDLVSRCF G
101: IADSSSKLRS LKLAMCYLIE NEGLIEVIAK LPLLEVLEVS YCSLSGEPLE PIVPSSCPNQ MTLGNNCDDV ALAIAESMPG LTRLQLFGNR LTNFGLNAIL
201: DRCPNLEYLD LRQCINVDIV GDMERRCYER IKVLRRPNDP VDDYPYGVSD VDEMSEEYYG NYSAASDYSD TGEDLVSRCF G
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.