Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G555100.1 | Wheat | cytosol | 93.15 | 89.25 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 17.13 | 52.38 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 26.17 | 48.84 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 27.73 | 43.41 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 22.43 | 43.37 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 27.41 | 43.35 |
| TraesCS2B01G178700.1 | Wheat | plastid | 41.43 | 43.04 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 26.48 | 40.87 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 43.3 | 40.41 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 27.1 | 38.84 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 26.17 | 37.5 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 29.91 | 37.21 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 21.5 | 35.75 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 33.64 | 32.73 |
| AT4G03630.1 | Thale cress | cytosol | 22.43 | 32.73 |
| CDX77948 | Canola | cytosol | 16.82 | 31.95 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 29.28 | 31.86 |
| CDY21988 | Canola | cytosol | 14.95 | 31.79 |
| CDX99649 | Canola | cytosol | 23.05 | 31.76 |
| CDY48578 | Canola | cytosol | 24.3 | 31.08 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 31.15 | 30.96 |
| CDY15937 | Canola | cytosol | 22.43 | 30.9 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 31.15 | 30.86 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 30.53 | 30.62 |
| KRH21099 | Soybean | cytosol | 29.59 | 30.55 |
| Bra034230.1-P | Field mustard | cytosol | 24.92 | 30.42 |
| CDX73787 | Canola | cytosol | 23.99 | 30.08 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 28.66 | 30.07 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 32.4 | 30.06 |
| Bra030342.1-P | Field mustard | cytosol | 21.81 | 30.04 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 32.71 | 30.0 |
| CDY21333 | Canola | nucleus, plastid | 27.41 | 29.93 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 28.97 | 29.71 |
| CDY21989 | Canola | cytosol | 7.48 | 29.63 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 31.78 | 29.57 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 28.04 | 29.22 |
| AT4G05490.1 | Thale cress | plastid | 27.73 | 28.99 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 28.97 | 28.97 |
| KRH11147 | Soybean | cytosol | 28.66 | 28.93 |
| AT4G05460.1 | Thale cress | cytosol | 27.1 | 28.81 |
| Bra034229.1-P | Field mustard | cytosol | 24.61 | 28.62 |
| Bra034226.1-P | Field mustard | cytosol | 25.55 | 28.47 |
| Solyc08g013780.1.1 | Tomato | cytosol | 10.9 | 28.46 |
| TraesCS6B01G067700.1 | Wheat | plastid | 23.68 | 28.36 |
| Bra000817.1-P | Field mustard | plastid | 15.89 | 28.33 |
| CDY62000 | Canola | plastid | 28.66 | 27.96 |
| CDX90789 | Canola | cytosol | 26.17 | 27.91 |
| AT5G52480.1 | Thale cress | cytosol | 20.87 | 27.8 |
| CDY48580 | Canola | cytosol | 26.48 | 27.69 |
| PGSC0003DMT400016134 | Potato | cytosol | 24.92 | 27.59 |
| Bra034227.1-P | Field mustard | plastid | 27.1 | 27.36 |
| CDY48577 | Canola | cytosol | 23.99 | 27.3 |
| CDY48575 | Canola | plastid | 26.79 | 27.13 |
| CDY59275 | Canola | plastid | 27.1 | 27.1 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 27.73 | 26.97 |
| AT4G05475.1 | Thale cress | cytosol | 25.86 | 26.86 |
| Bra000816.1-P | Field mustard | plastid | 27.1 | 26.77 |
| Solyc08g006940.2.1 | Tomato | cytosol | 25.86 | 26.69 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 21.5 | 26.64 |
| PGSC0003DMT400052833 | Potato | cytosol | 22.74 | 26.55 |
| CDY48574 | Canola | cytosol | 24.61 | 26.51 |
| CDY48576 | Canola | cytosol | 24.3 | 26.26 |
| PGSC0003DMT400015035 | Potato | cytosol | 24.92 | 26.14 |
| CDY10283 | Canola | cytosol | 25.55 | 26.11 |
| Bra030690.1-P | Field mustard | cytosol | 22.74 | 25.98 |
| CDY15618 | Canola | cytosol | 22.74 | 25.98 |
| CDY09910 | Canola | nucleus | 25.86 | 25.94 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 24.61 | 25.82 |
| CDY21986 | Canola | cytosol, plastid | 23.99 | 25.67 |
| Bra034228.1-P | Field mustard | cytosol | 23.68 | 25.59 |
| PGSC0003DMT400090939 | Potato | cytosol | 23.99 | 25.41 |
| AT4G05497.1 | Thale cress | plastid | 19.31 | 25.2 |
| Solyc08g013800.2.1 | Tomato | cytosol | 23.05 | 25.17 |
| CDX86473 | Canola | cytosol | 19.94 | 25.0 |
| PGSC0003DMT400015030 | Potato | cytosol | 23.05 | 25.0 |
| TraesCS6B01G310200.1 | Wheat | plastid | 27.73 | 24.65 |
| PGSC0003DMT400054358 | Potato | cytosol | 25.86 | 24.48 |
| CDY21990 | Canola | cytosol | 14.64 | 24.48 |
| Bra000723.1-P | Field mustard | cytosol | 11.53 | 24.34 |
| CDY06267 | Canola | nucleus | 26.17 | 24.14 |
| Bra031582.1-P | Field mustard | nucleus | 25.86 | 23.71 |
| PGSC0003DMT400058969 | Potato | cytosol | 6.54 | 23.6 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 24.92 | 22.86 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 24.3 | 22.61 |
| TraesCS3B01G452300.1 | Wheat | plastid | 32.71 | 22.58 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 32.71 | 22.2 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 30.22 | 21.8 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 16.2 | 21.4 |
| Solyc08g013820.2.1 | Tomato | cytosol | 24.3 | 20.97 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 17.45 | 18.48 |
| Bra034194.1-P | Field mustard | cytosol | 25.86 | 15.51 |
| CDY09154 | Canola | plastid | 27.1 | 15.34 |
| Bra020205.1-P | Field mustard | plastid | 27.1 | 15.34 |
| CDY21983 | Canola | cytosol | 13.4 | 15.19 |
| CDY22112 | Canola | cytosol | 22.74 | 15.15 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G480000.1 | EnsemblPlantsGene:TraesCS7B01G480000 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR44078 | PFAM:PF00646 | SEG:seg | SMART:SM00367 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:734138163..734140510
Molecular Weight (calculated)
35688.2 Da
IEP (calculated)
5.091
GRAVY (calculated)
0.065
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MCARGPSARD WSEMPLDALT CVFAKLGAVE LLMGAGLVCR SWLHASKAPE LWRAVVMSRP PDTPEGTEAF LRAIAKVSSE LRPSVLITGI DDPWSAMVKV
101: DDSLCAMAKV AVDRSGGRLQ KFVARDFGTD ELLEYIADRS PSLKSLGLMQ CHDISEKGFM DLIVKFPQLE ELVLIECHNI SDDQKENRDV YEAISRACSQ
201: LKLFVLAHPG YFLHPNGSYG FHDGDVLGIA TMKQLRHLSL DCVNINNAEL VSIIDSCPYL EHLCMRNCYN IVADEALRAK CARIKTLKLK PMSVETASND
301: CCFVFFDPPV DEFVILSFFD T
101: DDSLCAMAKV AVDRSGGRLQ KFVARDFGTD ELLEYIADRS PSLKSLGLMQ CHDISEKGFM DLIVKFPQLE ELVLIECHNI SDDQKENRDV YEAISRACSQ
201: LKLFVLAHPG YFLHPNGSYG FHDGDVLGIA TMKQLRHLSL DCVNINNAEL VSIIDSCPYL EHLCMRNCYN IVADEALRAK CARIKTLKLK PMSVETASND
301: CCFVFFDPPV DEFVILSFFD T
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.