Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09910 | Canola | nucleus | 64.24 | 60.62 |
| AT4G05497.1 | Thale cress | plastid | 46.36 | 56.91 |
| Bra031582.1-P | Field mustard | nucleus | 64.24 | 55.43 |
| CDY06267 | Canola | nucleus | 63.58 | 55.17 |
| Bra030690.1-P | Field mustard | cytosol | 50.0 | 53.74 |
| CDY15618 | Canola | cytosol | 50.0 | 53.74 |
| AT4G03630.1 | Thale cress | cytosol | 39.07 | 53.64 |
| CDX86473 | Canola | cytosol | 45.36 | 53.52 |
| CDY10283 | Canola | cytosol | 54.64 | 52.55 |
| AT4G05490.1 | Thale cress | plastid | 52.32 | 51.47 |
| AT5G52480.1 | Thale cress | cytosol | 40.07 | 50.21 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 50.99 | 47.98 |
| KRH21099 | Soybean | cytosol | 47.35 | 45.98 |
| KRH11147 | Soybean | cytosol | 47.02 | 44.65 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 44.7 | 44.12 |
| PGSC0003DMT400058969 | Potato | cytosol | 12.91 | 43.82 |
| Solyc08g006940.2.1 | Tomato | cytosol | 44.7 | 43.41 |
| AT4G05475.1 | Thale cress | cytosol | 44.37 | 43.37 |
| PGSC0003DMT400016134 | Potato | cytosol | 41.39 | 43.1 |
| PGSC0003DMT400090939 | Potato | cytosol | 41.72 | 41.58 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 35.43 | 40.07 |
| PGSC0003DMT400052833 | Potato | cytosol | 36.42 | 40.0 |
| Solyc08g013800.2.1 | Tomato | cytosol | 38.74 | 39.8 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 32.45 | 37.98 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 20.86 | 37.95 |
| PGSC0003DMT400015030 | Potato | cytosol | 37.09 | 37.84 |
| PGSC0003DMT400015035 | Potato | cytosol | 37.42 | 36.93 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 12.58 | 36.19 |
| PGSC0003DMT400054358 | Potato | cytosol | 40.07 | 35.69 |
| Solyc08g013780.1.1 | Tomato | cytosol | 14.24 | 34.96 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 39.4 | 34.49 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 34.11 | 33.66 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 34.11 | 33.66 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 38.41 | 33.53 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 38.41 | 33.53 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 10.93 | 33.33 |
| Zm00001d024252_P001 | Maize | cytosol | 29.14 | 33.33 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 18.87 | 33.14 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 22.19 | 33.0 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 33.11 | 32.68 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 18.54 | 32.56 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 21.85 | 32.51 |
| Zm00001d010914_P001 | Maize | cytosol | 35.1 | 32.42 |
| Os08t0193200-00 | Rice | cytosol | 12.25 | 32.17 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 32.78 | 32.14 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 37.09 | 32.0 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 31.13 | 31.86 |
| Os02t0317500-01 | Rice | cytosol | 34.77 | 31.82 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 21.19 | 31.68 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 32.12 | 31.49 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 36.42 | 31.43 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 36.42 | 31.43 |
| EES14679 | Sorghum | nucleus | 35.76 | 31.4 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 20.86 | 31.03 |
| EES17669 | Sorghum | cytosol | 34.11 | 31.02 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 31.79 | 30.97 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 23.84 | 30.9 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 33.44 | 30.79 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 20.86 | 30.73 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 32.12 | 30.7 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 34.44 | 30.68 |
| Zm00001d024265_P001 | Maize | cytosol | 30.46 | 30.67 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 32.78 | 30.65 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 29.47 | 30.58 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 32.78 | 30.56 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 34.44 | 30.5 |
| Os02t0317300-01 | Rice | cytosol | 33.11 | 30.49 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 33.11 | 30.49 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 34.11 | 30.38 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 30.13 | 30.23 |
| Os08t0194350-00 | Rice | cytosol | 26.49 | 30.08 |
| KXG24675 | Sorghum | cytosol | 28.48 | 29.86 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 34.11 | 29.77 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 32.45 | 29.7 |
| Solyc08g013820.2.1 | Tomato | cytosol | 36.42 | 29.57 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 28.48 | 29.55 |
| KXG24670 | Sorghum | cytosol | 30.79 | 29.34 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 10.26 | 29.25 |
| Os11t0637300-00 | Rice | cytosol | 11.59 | 29.17 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 21.52 | 29.02 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 19.87 | 28.85 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 11.26 | 28.81 |
| Os08t0193500-00 | Rice | cytosol | 20.86 | 28.77 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 29.47 | 28.62 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 29.14 | 28.48 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 28.48 | 28.48 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 29.47 | 28.43 |
| TraesCS2B01G178700.1 | Wheat | plastid | 28.81 | 28.16 |
| TraesCS2D01G159000.1 | Wheat | plastid | 28.48 | 27.83 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 28.81 | 27.8 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 29.47 | 27.47 |
| Os08t0193900-01 | Rice | nucleus | 35.76 | 27.27 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 29.14 | 27.16 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 28.81 | 27.1 |
| OQU80176 | Sorghum | mitochondrion | 19.87 | 26.91 |
| TraesCS6B01G067700.1 | Wheat | plastid | 23.84 | 26.87 |
| Zm00001d046526_P001 | Maize | plastid | 25.17 | 26.86 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 19.87 | 26.79 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 12.58 | 26.76 |
| Zm00001d024764_P001 | Maize | cytosol | 31.13 | 26.33 |
| OQU80048 | Sorghum | cytosol | 24.83 | 26.32 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 27.81 | 26.25 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 29.47 | 25.87 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 29.8 | 25.86 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 26.82 | 25.47 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 27.81 | 25.45 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 16.23 | 25.39 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 28.15 | 25.37 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 18.54 | 25.23 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 28.48 | 25.0 |
| TraesCS7D01G203500.1 | Wheat | plastid | 27.48 | 24.41 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 27.48 | 24.34 |
| TraesCS7D01G203600.1 | Wheat | plastid | 27.48 | 24.34 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 34.77 | 24.31 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 22.52 | 24.2 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 26.82 | 23.48 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 27.15 | 23.43 |
| TraesCS6B01G310200.1 | Wheat | plastid | 27.81 | 23.27 |
| HORVU2Hr1G077990.2 | Barley | plastid | 28.81 | 23.26 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 27.15 | 23.23 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 27.15 | 23.16 |
| OQU80174 | Sorghum | cytosol | 10.26 | 23.13 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 15.89 | 22.54 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 34.44 | 22.13 |
| Os08t0191300-00 | Rice | cytosol, golgi | 18.54 | 21.79 |
| Os08t0193300-00 | Rice | cytosol | 23.84 | 21.62 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 17.55 | 21.2 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 31.13 | 21.12 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 21.19 | 21.12 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 16.89 | 20.99 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 30.13 | 20.78 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 32.12 | 20.73 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 32.45 | 20.68 |
| TraesCS3B01G452300.1 | Wheat | plastid | 31.79 | 20.65 |
| TraesCS6A01G051000.1 | Wheat | plastid | 25.17 | 20.43 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 31.79 | 20.3 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 17.88 | 20.0 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 26.16 | 19.95 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 25.83 | 19.95 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 31.79 | 19.35 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 19.21 | 19.21 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 17.22 | 17.39 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 19.87 | 16.17 |
| Os08t0196200-01 | Rice | cytosol | 10.93 | 12.04 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 1.32 | 1.06 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825896 | ProteinID:AEE82523.1 | EMBL:AK227360 |
| ArrayExpress:AT4G05460 | EnsemblPlantsGene:AT4G05460 | RefSeq:AT4G05460 | TAIR:AT4G05460 | RefSeq:AT4G05460-TAIR-G | EnsemblPlants:AT4G05460.1 |
| TAIR:AT4G05460.1 | EMBL:AY087774 | EMBL:BT003081 | ProteinID:CAB81088.1 | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 |
| InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp |
| RefSeq:NP_567294.1 | PFAM:PF00560 | PFAM:PF12937 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50181 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF5 | UniProt:Q9M0U9 | SMART:SM00256 |
| SMART:SM00367 | SUPFAM:SSF52047 | UniParc:UPI000000BED1 | SEG:seg | : | : |
Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
Coordinates
chr4:-:2760502..2762445
Molecular Weight (calculated)
34160.2 Da
IEP (calculated)
4.343
GRAVY (calculated)
-0.349
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.