Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- extracellular 1
- vacuole 2
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G452500.1 | Wheat | cytosol | 95.11 | 69.98 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 89.66 | 65.82 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 83.62 | 62.18 |
| Os08t0193200-00 | Rice | cytosol | 20.11 | 60.87 |
| KXG24670 | Sorghum | cytosol | 50.86 | 55.84 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 66.95 | 53.2 |
| Os08t0193500-00 | Rice | cytosol | 31.61 | 50.23 |
| Os08t0193300-00 | Rice | cytosol | 38.51 | 40.24 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 22.13 | 37.93 |
| PGSC0003DMT400058969 | Potato | cytosol | 9.48 | 37.08 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 17.53 | 35.47 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 20.4 | 35.15 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 29.6 | 33.66 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 26.15 | 31.27 |
| KRH21099 | Soybean | cytosol | 27.87 | 31.19 |
| TraesCS2D01G159000.1 | Wheat | plastid | 27.59 | 31.07 |
| AT4G03630.1 | Thale cress | cytosol | 19.54 | 30.91 |
| CDY21989 | Canola | cytosol | 7.18 | 30.86 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 30.46 | 30.29 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 29.89 | 30.23 |
| KRH11147 | Soybean | cytosol | 27.59 | 30.19 |
| CDX73787 | Canola | cytosol | 22.13 | 30.08 |
| Bra034230.1-P | Field mustard | cytosol | 22.7 | 30.04 |
| CDY48578 | Canola | cytosol | 21.55 | 29.88 |
| Bra034227.1-P | Field mustard | plastid | 27.3 | 29.87 |
| AT4G05460.1 | Thale cress | cytosol | 25.86 | 29.8 |
| CDY48575 | Canola | plastid | 27.01 | 29.65 |
| CDY48580 | Canola | cytosol | 26.15 | 29.64 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 25.57 | 29.57 |
| Bra000817.1-P | Field mustard | plastid | 15.23 | 29.44 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 29.02 | 29.19 |
| CDX99649 | Canola | cytosol | 19.54 | 29.18 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 26.72 | 28.7 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 27.01 | 28.66 |
| AT5G52480.1 | Thale cress | cytosol | 19.83 | 28.63 |
| PGSC0003DMT400016134 | Potato | cytosol | 23.85 | 28.62 |
| CDY21988 | Canola | cytosol | 12.36 | 28.48 |
| CDY15937 | Canola | cytosol | 18.97 | 28.33 |
| Bra030342.1-P | Field mustard | cytosol | 18.97 | 28.33 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 20.98 | 28.19 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 25.57 | 28.16 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 25.86 | 28.04 |
| CDX90789 | Canola | cytosol | 24.14 | 27.91 |
| CDY21333 | Canola | nucleus, plastid | 23.56 | 27.89 |
| Bra030690.1-P | Field mustard | cytosol | 22.41 | 27.76 |
| CDY15618 | Canola | cytosol | 22.41 | 27.76 |
| Solyc08g013780.1.1 | Tomato | cytosol | 9.77 | 27.64 |
| PGSC0003DMT400052833 | Potato | cytosol | 21.84 | 27.64 |
| Bra034229.1-P | Field mustard | cytosol | 21.84 | 27.54 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 26.44 | 27.46 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 26.72 | 27.27 |
| AT4G05497.1 | Thale cress | plastid | 19.25 | 27.24 |
| Bra000816.1-P | Field mustard | plastid | 25.29 | 27.08 |
| AT4G05490.1 | Thale cress | plastid | 23.85 | 27.04 |
| Solyc08g006940.2.1 | Tomato | cytosol | 24.14 | 27.01 |
| CDX86473 | Canola | cytosol | 19.83 | 26.95 |
| AT4G05475.1 | Thale cress | cytosol | 23.85 | 26.86 |
| CDY48574 | Canola | cytosol | 22.99 | 26.85 |
| PGSC0003DMT400015035 | Potato | cytosol | 23.28 | 26.47 |
| PGSC0003DMT400090939 | Potato | cytosol | 22.99 | 26.4 |
| Bra034226.1-P | Field mustard | cytosol | 21.84 | 26.39 |
| Bra000723.1-P | Field mustard | cytosol | 11.49 | 26.32 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 23.56 | 26.2 |
| CDX77948 | Canola | cytosol | 12.64 | 26.04 |
| CDY48576 | Canola | cytosol | 22.13 | 25.93 |
| CDY62000 | Canola | plastid | 24.43 | 25.84 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 22.7 | 25.82 |
| CDY21986 | Canola | cytosol, plastid | 22.13 | 25.67 |
| CDY09910 | Canola | nucleus | 23.56 | 25.62 |
| CDY48577 | Canola | cytosol | 20.69 | 25.53 |
| Solyc08g013800.2.1 | Tomato | cytosol | 21.55 | 25.51 |
| CDY06267 | Canola | nucleus | 25.0 | 25.0 |
| Bra034228.1-P | Field mustard | cytosol | 21.26 | 24.92 |
| TraesCS7D01G203600.1 | Wheat | plastid | 24.14 | 24.63 |
| Bra031582.1-P | Field mustard | nucleus | 24.71 | 24.57 |
| CDY10283 | Canola | cytosol | 22.13 | 24.52 |
| PGSC0003DMT400015030 | Potato | cytosol | 20.69 | 24.32 |
| CDY59275 | Canola | plastid | 22.41 | 24.3 |
| TraesCS7D01G203500.1 | Wheat | plastid | 23.56 | 24.12 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 9.77 | 23.94 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 21.26 | 23.27 |
| PGSC0003DMT400054358 | Potato | cytosol | 21.55 | 22.12 |
| Solyc08g013820.2.1 | Tomato | cytosol | 23.56 | 22.04 |
| CDY21990 | Canola | cytosol | 10.63 | 19.27 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 20.4 | 19.14 |
| CDY21983 | Canola | cytosol | 15.23 | 18.73 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 15.8 | 18.15 |
| Bra034194.1-P | Field mustard | cytosol | 22.99 | 14.95 |
| CDY22112 | Canola | cytosol | 20.11 | 14.52 |
| Bra020205.1-P | Field mustard | plastid | 22.41 | 13.76 |
| CDY09154 | Canola | plastid | 22.41 | 13.76 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G413100.1 | EnsemblPlantsGene:TraesCS3D01G413100 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44078 |
| SEG:seg | SUPFAM:SSF52047 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:525639556..525641301
Molecular Weight (calculated)
40523.8 Da
IEP (calculated)
4.237
GRAVY (calculated)
-0.480
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAQPNPLPV SEVRGWSELP LDALSAIFMK LGTIEILWLW RFVDMTRHKV VFSKAENVMC KMAKVAIDRS DGRMESFWAQ KFVTSELLNY IASRCNLLKS
101: IRLIGAYYFW DDENVVIKLA AKCPTLEEIE YSDQKQSWSF FMAIGAARPE LKRLRVRLPW FDSDSIEREM RMEQRNGDDE DEEEEEEESD EAWEARHNEE
201: AFAIAESLHE LRLLQMAGYG LTNKGVYAIL EGCPHLEFLD LRECLHIEVN AELRARCANI RHVPLPGREP YVRCPELQTI EADEGQVIEM ADLYETEARS
301: LHDEPAMEND DYGENYCDCW DDYSLPSSPD SPALPMYSMD DPRYYWEL
101: IRLIGAYYFW DDENVVIKLA AKCPTLEEIE YSDQKQSWSF FMAIGAARPE LKRLRVRLPW FDSDSIEREM RMEQRNGDDE DEEEEEEESD EAWEARHNEE
201: AFAIAESLHE LRLLQMAGYG LTNKGVYAIL EGCPHLEFLD LRECLHIEVN AELRARCANI RHVPLPGREP YVRCPELQTI EADEGQVIEM ADLYETEARS
301: LHDEPAMEND DYGENYCDCW DDYSLPSSPD SPALPMYSMD DPRYYWEL
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.